g.barbadense_cottongen_reftransV1_0094251, g.barbadense_cottongen_reftransV1_0094251 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094251
Unique Nameg.barbadense_cottongen_reftransV1_0094251
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2004
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC6_ARATH (Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 6.640e-129
Identity = 230/354 (64.97%), Postives = 277/354 (78.25%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLM-HQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASG---NISSCPPGFHISRGVKHMQHPQQNVHH----LPHISEVPYNSREMHASDVLPVTP---GTSEAAKSRQGKRA--KEAKVIASNXXXXXXXXXXKQENEDS-DKLMSGKS-HEWKGGQDVGGAGDDLNKQ-LVTTKSDWKGKDL-GLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEG-YDLSNPVDLKHHWAKHGTNRYITIK 1573
            MDDGGHRENGR KA      QGQWLM HQPSMKQ+M+I+AERDAAIQERNLA+SEKKAA+AERDMAFLQRD AIAERNNAI ERD+A+  LQYRENS+ +    N+S+CPPG  ISRGVKH+ HP  + HH    +P ++E  Y +REM  +D LP +P    T E+AK ++GKR   K     A+NK+  K  +KVK+E+ED  +K+M  K+ H++          +D +K  L+ +KSDWK +++ GLNQVV+D++TM PPVCSCTGVLRQCYKWGNGGWQSSCCTT+LSMYPLPA+PNKRHAR+GGRKMSGSAFNKLL+RLAAEG +DLSNPVDLK HWAKHGTNRYITIK
Sbjct:    1 MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDY--------TDEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BBRD_ORYSJ (Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.073e-93
Identity = 180/349 (51.58%), Postives = 228/349 (65.33%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLMHQPSMK-------QIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLP---HISEVPYN-SREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVG--GAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            MD+ GHRENGR + DQY+    QW+M Q            ++A+M +RD AI+ER+ AL+EKKAAIAERDMAF QRDAA+AERN A+ ERDNA+A L+    +  + N  +  P   +S G K++ H  Q  H       +++ PY+ +REMH S+  P++     A K+   KR K+    AS  K      +  ++           S +WK   +VG  G GDD +      K++WK ++LGLNQV FDDSTM  P CSCTG LRQCYKWGNGGWQSSCCT ++SMYPLP +PNKRHAR+GGRKMSG AF KLL+RLAAEG+DLS PVDLK HWAKHGTNRYITI+
Sbjct:    1 MDNLGHRENGRQRPDQYKGLHTQWMMPQTQRHLKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDNALAALELARTNGLNMNNGNGFPQGSLS-GSKNIHHHDQLSHAQSSPLQLADSPYDHAREMHISEAYPISTAPGSAGKA---KRPKKNSSQASPLKRPSGVLRKTKK----------PSGDWK---NVGMSGCGDD-SAHASVMKNEWKDQNLGLNQVAFDDSTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMNISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 331          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC4_ARATH (Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.248e-78
Identity = 157/352 (44.60%), Postives = 206/352 (58.52%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLM---HQPSM--------KQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQ-GKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVT----TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            M++GG  +N R K D ++ AQ  W M   HQ           K+IM+I+AERDAA+ ERN A+S KK A+A RD A  QRD A++ER+ A+ ERDNA A LQ+ ENSL           F +S G K +              +  +   E H  +V P++    E   ++   KR KE K                                 +G   V   G+DLN+++      +++DW  +D+GLN V FD++TM  P+CSCTG  RQCYKWGNGGWQSSCCTT+LS YPLP +PNKRH+R+GGRKMSG+ F++LL+RL+AEGYDLS PVDLK +WA+HGTNRYITIK
Sbjct:    1 MENGGQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERNQAVSAKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSL----------NFALSGG-KCVD------------GDDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRKKENK---------------------------------QGLSKVKKVGEDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC5_ARATH (Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thaliana GN=BPC5 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.674e-73
Identity = 151/347 (43.52%), Postives = 203/347 (58.50%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLMHQPSM-------KQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVT----TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            M+ GG  ENGR K D Y+  Q   +M +          K+I++I+AERDAA++ERN A++  K A+A RD A  QRD A++ER+NAI E ++A+  L+YREN+L    I SC       RG       +++  HLP+ S               P++    EAA +R  KR KE+K                           GK             G+DLN+ + +    ++ DW   D+    V FD+ TM  P+C+CTG  RQCYKWGNGGWQSSCCTT+LS YPLP +PNKRH+R+GGRKMSGS F++LL+RLA EG++LS+PVDLK++WA+HGTNRYITIK
Sbjct:    1 MESGGQYENGRYKPDYYKGTQSVNVMPKKEQHNALVMNKKIISILAERDAAVKERNEAVAATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNL--NYILSC-----AKRGGSQRFITEES--HLPNPS---------------PISTIPPEAANTRPTKRKKESK--------------------------QGKK-----------MGEDLNRPVASPGKKSRKDWDSNDV---LVTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKMSGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK 283          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC7_ARATH (Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.605e-43
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  566 TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 910
            TK + K  D+ ++   FD S + PPVCSCTGV R CYKWG GGWQSSCCT S+S YPLP    +  AR+ GRKMS  A+ KLL RLA EGYDLS+P+DLK+HWA+HGTN+++TIK
Sbjct:  112 TKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 226          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC3_ARATH (Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thaliana GN=BPC3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.211e-39
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -3
Query:  566 KGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 895
            K  ++ +N V  D   +  PVCSCTG+ +QCY+WG GGWQS+CCTT++SMYPLP    +R ARI GRKMS  AF K+L +L+++G+D SNP+DLK HWAKHGTN+++TI+
Sbjct:  160 KCIEMVINGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPVNTKRRGARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 269          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BBR_HORVU (Protein Barley B recombinant OS=Hordeum vulgare GN=BBR PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.137e-39
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  566 TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 910
            ++   K  ++ +N + FD S +  PVCSCTG  +QCY+WG GGWQS+CCTTS+S YPLP    +R ARI GRKMS  AF K+L +LA EGY+L+NP+DLK  WAKHGTN+++TI+
Sbjct:  236 SRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC2_ARATH (Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.271e-38
Identity = 61/110 (55.45%), Postives = 84/110 (76.36%), Query Frame = -3
Query:  566 KGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 895
            K  DL +N V  D S +  P+C+CTG  +QCY+WG GGWQS+CCTT++SM+PLP    +R ARI GRKMS  AF K+L +LA++G++  NP+DLK HWA+HGTN+++TI+
Sbjct:  170 KSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC1_ARATH (Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.252e-38
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = -3
Query:  566 KGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 895
            K  DL +N V  D S +  PVC+CTG  +QCY+WG GGWQS+CCTT++S+YPLP    +R ARI GRKMS  AF K+L +L+ EGY   N +DLK HWA+HGTN+++TI+
Sbjct:  174 KSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNKFVTIR 283          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BBRB_ORYSJ (Barley B recombinant-like protein B OS=Oryza sativa subsp. japonica GN=Os10g0115200 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.548e-37
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -3
Query:  566 KDLGL--NQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 889
            K++G+  N +  D S +  P+CSCTG  +QCY+WG GGWQS+CCTT++S YPLP    +R ARI GRKMS  AF K+L +LA EGY+L+NP+DLK  WAKHGTN+++TI+
Sbjct:  232 KNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: A0A059CE00_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01054 PE=4 SV=1)

HSP 1 Score: 476.863 bits (1226), Expect = 1.989e-160
Identity = 250/337 (74.18%), Postives = 276/337 (81.90%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLM-HQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            MDDGGHRENGR KAD Y+ AQ QWLM HQPSMKQIM IMAERDAA+QERNLALSEKKAAIAERD+AF QRD AIAERNNA  ERDNAIA LQYRENSL SGNISSCPPG  ISRGVKHM HPQQ VHH+  +SE  Y +R+MH SD LP++P  SEA +SRQ KR KEAK ++++KKA K PKKVK+E +D +KL++G               D  NK     KSDWKG+DLGLNQV FDDSTM  PVCSCTG+ RQCYKWGNGGWQSSCCTT++SMYPLPAVPNKRHAR+GGRKMSGSAF KLL+RLAAEGYDLS+PVDLK HWAKHGTNRYITIK
Sbjct:    1 MDDGGHRENGRHKADHYKNAQSQWLMQHQPSMKQIMGIMAERDAALQERNLALSEKKAAIAERDIAFHQRDMAIAERNNAYLERDNAIATLQYRENSLTSGNISSCPPGCQISRGVKHMHHPQQQVHHVSSMSEAAYGTRDMHPSDALPISPVASEATRSRQTKRTKEAKAMSTSKKAPKTPKKVKRETDDLNKLLNGD--------------DGYNKPFGVPKSDWKGQDLGLNQVAFDDSTMPSPVCSCTGIARQCYKWGNGGWQSSCCTTTISMYPLPAVPNKRHARVGGRKMSGSAFGKLLSRLAAEGYDLSSPVDLKDHWAKHGTNRYITIK 323          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: B9GQZ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02820g PE=4 SV=2)

HSP 1 Score: 469.929 bits (1208), Expect = 1.230e-157
Identity = 262/338 (77.51%), Postives = 291/338 (86.09%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLMH-QPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPH-ISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            MDDGGHRENGR KADQY+TAQGQWLM  QPSMKQIMAIMAERDAAI ERN+ALSEKKAAIAERDMAFLQRD+AIAERNNA+ ERDNAIA LQYRENSL SGN+++CPPGFH SRGVKHM H QQ   H    ++E PY +REM  SD LPV+P  SE AK ++GKR K+AK   SNKK +K P+KVK+E++D+D  M GKSHEWK GQD+ G GDD NKQL  +KSDWKG+DLGLNQV FD++TM  PVCSCTGV RQCYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF+KLL+RLAAEG DLSNPVDLK HWAKHGTNRYITIK
Sbjct:    1 MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAIAERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPSGNMTTCPPGFHNSRGVKHMHHQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTSKSPRKVKRESDDTD--MFGKSHEWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: B9H4J8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25720g PE=4 SV=1)

HSP 1 Score: 469.159 bits (1206), Expect = 2.734e-157
Identity = 254/337 (75.37%), Postives = 286/337 (84.87%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLMH-QPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            MDDG HRENGR KADQY+TAQGQWLM  QPSMKQIMAIMAERDAAI ERN+ALSEKKAA+AERDMAFLQRD+AIAERNNA+ ERDNAIA LQYRENS AS N SS PPG+H SRGVKHM H QQ++H   H++E  Y +REM  SD +P++P  SEAAK R+GKR K+ +   SNKK +K P KVK+E+ED +  M GKS+EWK G+D+ G GD LNKQL  +KSDWKG+DLGLNQV FD++TM  PVCSCTG  RQCYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF+KLL+RLAAEG DLSNPVDLK HWAKHGTNRYITIK
Sbjct:    1 MDDGVHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAVAERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSFASANTSSSPPGYHNSRGVKHMHHQQQHIHLP-HMNEGAYGTREMQTSDAVPISPVASEAAKPRRGKRPKDTQSTPSNKKTSKSPMKVKRESEDLNN-MFGKSNEWKNGEDMNGGGDGLNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGFFRQCYKWGNGGWQSSCCTTALSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 335          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: H1ZN45_POPTR (GAGA-binding transcriptional activator OS=Populus trichocarpa GN=BBR/BPC6 PE=2 SV=1)

HSP 1 Score: 468.389 bits (1204), Expect = 5.364e-157
Identity = 261/338 (77.22%), Postives = 290/338 (85.80%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLMH-QPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPH-ISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            MDDGGHRENGR KADQY+TAQGQWLM  QPSMKQIMAIMAERDAAI ERN+ALSEKKAAI ERDMAFLQRD+AIAERNNA+ ERDNAIA LQYRENSL SGN+++CPPGFH SRGVKHM H QQ   H    ++E PY +REM  SD LPV+P  SE AK ++GKR K+AK   SNKK +K P+KVK+E++D+D  M GKSHEWK GQD+ G GDD NKQL  +KSDWKG+DLGLNQV FD++TM  PVCSCTGV RQCYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF+KLL+RLAAEG DLSNPVDLK HWAKHGTNRYITIK
Sbjct:    1 MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAITERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPSGNMTTCPPGFHNSRGVKHMHHQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTSKSPRKVKRESDDTD--MFGKSHEWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336          
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: A0A068UIH3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_26 OS=Coffea canephora GN=GSCOC_T00024693001 PE=4 SV=1)

HSP 1 Score: 464.922 bits (1195), Expect = 1.148e-155
Identity = 257/337 (76.26%), Postives = 285/337 (84.57%), Query Frame = -3
Query:  566 MDDGGHRENGRLKADQYRTAQGQWLM-HQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573
            MDD GHRENGR     ++  QGQWLM HQPSMKQIMAIMAERDAAIQERNLALSEKKAA+AERDMA LQRD+AIAERNNAI ERDNAIA LQYRENS+ SGN+S CPPG  I+RGVKHM HPQQ+VHH P ++E PY SR+M  SD +P++PG  E AKSR+ KR K+ K + S KKA+K  KKVK+E ED +K M GKSHEWK GQ+VG   DDLN+QL  +K DWK +DLGLNQV FD+STM  PVCSCTGVLR CYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHARIGGRKMSGSAFNKLL+RLAAEG+DLSNPVDLK HWAKHGTNRYITIK
Sbjct:    1 MDDSGHRENGR-----HKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENSINSGNMSPCPPGCQITRGVKHMHHPQQHVHHQPQVNEPPYGSRDMPISDAIPISPGVLEPAKSRRTKRTKDPKAVTSTKKASKSSKKVKREGEDLNKTMFGKSHEWKPGQEVGSGTDDLNRQLGVSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 332          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 12
Match NameE-valueIdentityDescription
BPC6_ARATH6.640e-12964.97Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thalia... [more]
BBRD_ORYSJ3.073e-9351.58Barley B recombinant-like protein D OS=Oryza sativ... [more]
BPC4_ARATH1.248e-7844.60Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thalia... [more]
BPC5_ARATH1.674e-7343.52Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thalia... [more]
BPC7_ARATH3.605e-4361.74Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thalia... [more]
BPC3_ARATH3.211e-3957.27Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thalia... [more]
BBR_HORVU6.137e-3956.52Protein Barley B recombinant OS=Hordeum vulgare GN... [more]
BPC2_ARATH2.271e-3855.45Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thalia... [more]
BPC1_ARATH5.252e-3856.36Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thalia... [more]
BBRB_ORYSJ1.548e-3757.27Barley B recombinant-like protein B OS=Oryza sativ... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059CE00_EUCGR1.989e-16074.18Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
B9GQZ0_POPTR1.230e-15777.51Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9H4J8_POPTR2.734e-15775.37Uncharacterized protein OS=Populus trichocarpa GN=... [more]
H1ZN45_POPTR5.364e-15777.22GAGA-binding transcriptional activator OS=Populus ... [more]
A0A068UIH3_COFCA1.148e-15576.26Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..88
NoneNo IPR availablePANTHERPTHR31421:SF2PROTEIN BASIC PENTACYSTEINE6coord: 6..194
coord: 215..340
IPR010409GAGA-binding transcriptional activatorSMARTSM01226GAGA_bind_2coord: 5..340
e-value: 4.2E-169
score: 577.8
IPR010409GAGA-binding transcriptional activatorPFAMPF06217GAGA_bindcoord: 5..340
e-value: 8.4E-102
score: 341.3
IPR010409GAGA-binding transcriptional activatorPANTHERPTHR31421FAMILY NOT NAMEDcoord: 6..194
coord: 215..340

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094251 ID=g.barbadense_cottongen_reftransV1_0094251; Name=g.barbadense_cottongen_reftransV1_0094251; organism=Gossypium barbadense; type=contig; length=2004bp
GATCCATTTAGTAATGGGACTAATTTGATACAGTCCTTACAATACAGTTT
GATACAGTCCTTACAATACAGGGACTTCCCAGGTACTTAATTCTTTATTT
ATATGGTTACCTAAAACCTCTGGTTATCAAATTGTCATCCTACCTATTAG
AGAAGCAAATTTGGTGGATTAAGCTAATAAACTGAAACTTGATTCAAGTA
CAACAAGACGTTTGAGGTACAGTACTTTTACAATTAAGTAGAGAGCTACA
GTCAACATAGTGCCAAGTTGACAACCCCATCATTTTTCCAAGCTTGGATG
TGCCAATGGTAATGGATACTTTCTCCTCTCTTCAAATACCAGGCTTGCTA
ATGGAGGATCGAGGCATATCGGAGGGGGCGTTTCCAGGGAAACCCAAAAT
TAAGTTGGCATTACCCACCTACTACTATTCCTTACTACAGTTATTTCCGG
ATCATTTATTTTTCCTACACTGCTACAATGACTAACGAAAGAAACATGAG
CCATGGCTGACTCTTCTCTACTTCTCCATACCATCCCATTTGCATTTGGT
ATCTTGAGCAACCTACTTGATGGTGATGTAGCGGTTTGTCCCATGCTTGG
CCCAGTGGTGCTTAAGATCAACAGGGTTGGACAAATCATAACCTTCTGCT
GCAAGCCGAGTAAGCAGCTTGTTGAAAGCGCTTCCACTCATCTTTCTGCC
TCCGATTCGGGCATGTCTTTTGTTGGGAACTGCTGGCAAAGGATACATTG
ACAAGGAGGTTGTGCAACATGAAGATTGCCATCCCCCGTTTCCCCATTTA
TAGCACTGTCTTAGGACTCCGGTGCAGGAACAAACAGGCGGTGCCATAGT
CGAGTCATCAAATACAACTTGATTCAACCCCAGATCCTTACCTTTCCAAT
CAGACTTCGTTGTCACTAGCTGTTTGTTGAGATCATCACCTGCACCACCC
ACATCTTGTCCACCCTTCCACTCATGTGACTTGCCAGACATAAGCTTATC
CGAGTCCTCGTTCTCTTGTTTTACCTTTTTTGGAGGCTTTGTAGCCTTCT
TGTTAGATGCAATTACCTTGGCCTCTTTTGCTCGTTTACCCTGTCTTGAC
TTTGCAGCTTCAGAGGTACCTGGCGTCACTGGTAGGACATCACTTGCATG
CATTTCCCTTGAGTTATAAGGAACTTCACTAATGTGGGGCAGATGGTGAA
CGTTCTGCTGTGGATGTTGCATGTGCTTCACTCCACGTGAGATATGGAAC
CCTGGAGGACAAGAGGATATATTGCCAGATGCCAAGGAGTTCTCTCGATA
CTGCAGATTTGCTATGGCATTATCACGTTCCGCTATAGCATTATTTCGCT
CAGCAATCGCTGCATCTCGCTGCAAGAATGCCATATCTCTCTCAGCAATA
GCTGCCTTCTTCTCAGAAAGTGCTAAATTCCTTTCTTGAATAGCTGCGTC
TCGTTCAGCCATAATGGCCATTATCTGCTTCATTGATGGCTGATGCATCA
GCCACTGGCCCTGAGCTGTTCTATACTGATCTGCTTTAAGTCTTCCATTT
TCACGATGCCCACCATCATCCATCGAAGACTCCAGGAAATTGTTGAGGTC
GACAAATACAGTCTCAGAACTCCGCTGTGAGGGTTGTATTAGTCAAGCAA
GCATCGCATCGCATCACTTTGGGGCAGACAATCCTTACTATCGAAAGGCG
TATGAGGAGCAAAACCACATCCTTTTAGCAGCTGATCTTCCCTGAATTAC
AACAGTGGAAGAATTAAAGAGGAAATAGATGGGAAATCAAGACATGAATT
TTGATAAGTTGAAGAAATATGTGGAAAGGAAGAGTGGAAAGAAAGGAAAA
ACAGAGGAATTTTTCCTTACTTTTTGTGTCCTGAGACCTTGATTTTCCAC
TGTAGTGTCGTCACGTTCCGCGGGTGGGCTATAAACCTAAGCACTCAATC
ACACAATCCATCGCCTAAGGCTAATCCATTTTTGTTTTAATAAAACTTGG
AATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR010409GAGA-bd_tscrpt_act