g.barbadense_cottongen_reftransV1_0094227, g.barbadense_cottongen_reftransV1_0094227 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094227
Unique Name	g.barbadense_cottongen_reftransV1_0094227
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3073

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt13	chromosome	g.barbadense_cottongen_reftransV1_0094227:1..3073 . Dt13:43993943..43998884 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy Swiss-Prot
Match: C3H13_ARATH (Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis thaliana GN=At1g48195 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.187e-14
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = -3

Query:  516 TQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDH 764
            ++  +P+RPG+ EC YY++TG C     CK+HHP +       S+    L   GLP R G   CP+Y + G C+ G TCKFDH
Sbjct:    2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNIT----PSEPQCTLNDKGLPLRPGQAICPHYSRFGICRSGPTCKFDH 80

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A0D2W652_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G146700 PE=4 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.003e-109
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = -3

Query:  501 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1010
            DEVDCPFYLKTGSCKYGSTCRYNHPDRNAF+PPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  163 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFVPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 332

HSP 2 Score: 100.523 bits (249), Expect = 2.608e-19
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPID-----RLTTN---EASQQAIKL-------------TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CK+GS C++NHP      P           + NL +  +                                   P+RP +  C +YMKTG CKFG  CKF+HP D      L  N   E S  A+K+                GLP R   V CP+Y+KTG+CKYG+TC+++HP
Sbjct:   46 EPDCPYFLKTQRCKFGSKCKFNHPKDKLDAP---------GDSENLTVSGL-----------------------------------PERPSEPPCAFYMKTGTCKFGSTCKFNHPKDIQIQLSLQNNVNCEQSDIAMKIGGISGDIKPALYHNSKGLPVRPDEVDCPFYLKTGSCKYGSTCRYNHP 187

HSP 3 Score: 98.2117 bits (243), Expect = 1.630e-18
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = -3

Query:  513 LKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 986
            + T +CK+G +C+++HP                       I V       ++ + P  +  +L                P+RPG+ +C Y++KT  CKFG +CKF+HP D+L   +A   +  LT++GLP R     C +YMKTGTCK+G+TCKF+HP
Sbjct:    1 MLTRTCKFGDSCKFDHP-----------------------IWVPEGGIPYWKEVPPVPAGESL----------------PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL---DAPGDSENLTVSGLPERPSEPPCAFYMKTGTCKFGSTCKFNHP 116

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A0D2VFH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G146700 PE=4 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 1.723e-109
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = -3

Query:  501 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1010
            DEVDCPFYLKTGSCKYGSTCRYNHPDRNAF+PPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  271 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFVPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 440

HSP 2 Score: 107.071 bits (266), Expect = 5.795e-21
Identity = 57/165 (34.55%), Postives = 85/165 (51.52%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G +C+++HP                       I V       ++ + P  +  +L                P+RPG+ +C Y++KT  CKFG +CKF+HP D+L   +A   +  LT++GLP R     C +YMKTGTCK+G+TCKF+HP
Sbjct:  105 EKDCAHYMLTRTCKFGDSCKFDHP-----------------------IWVPEGGIPYWKEVPPVPAGESL----------------PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL---DAPGDSENLTVSGLPERPSEPPCAFYMKTGTCKFGSTCKFNHP 227

HSP 3 Score: 95.5153 bits (236), Expect = 2.883e-17
Identity = 61/186 (32.80%), Postives = 82/186 (44.09%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPID-----RLTTN---EASQQAIKL-------------TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CK+GS C++NHP      P           + NL +  +                                   P+RP +  C +YMKTG CKFG  CKF+HP D      L  N   E S  A+K+                GLP     V CP+Y+KTG+CKYG+TC+++HP
Sbjct:  157 EPDCPYFLKTQRCKFGSKCKFNHPKDKLDAP---------GDSENLTVSGL-----------------------------------PERPSEPPCAFYMKTGTCKFGSTCKFNHPKDIQIQLSLQNNVNCEQSDIAMKIGGISGDIKPALYHNSKGLPDE---VDCPFYLKTGSCKYGSTCRYNHP 295

HSP 4 Score: 88.5817 bits (218), Expect = 5.268e-15
Identity = 55/139 (39.57%), Postives = 69/139 (49.64%), Query Frame = -3

Query:  513 PPVALGHSLIASASNL--NIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAG--LPRREGSVHCPYYMKTGTCKYGATCKFDHP 917
            P   L H  +  A N    I     ASSL +   PRL   + L            P+YPQRPG+ +C +YM T  CKFGD CKF HPI          + +    AG  LP R G   CPY++KT  CK+G+ CKF+HP
Sbjct:   56 PSQVLYHQNVLDAQNTLGQIEAWYSASSLVKR--PRLESASNL------------PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPYWKEVPPVPAGESLPERPGEPDCPYFLKTQRCKFGSKCKFNHP 180

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A0D2SE64_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G146700 PE=4 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 2.351e-109
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = -3

Query:  501 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1010
            DEVDCPFYLKTGSCKYGSTCRYNHPDRNAF+PPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  274 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFVPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 443

HSP 2 Score: 106.686 bits (265), Expect = 6.238e-21
Identity = 57/165 (34.55%), Postives = 85/165 (51.52%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G +C+++HP                       I V       ++ + P  +  +L                P+RPG+ +C Y++KT  CKFG +CKF+HP D+L   +A   +  LT++GLP R     C +YMKTGTCK+G+TCKF+HP
Sbjct:  105 EKDCAHYMLTRTCKFGDSCKFDHP-----------------------IWVPEGGIPYWKEVPPVPAGESL----------------PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL---DAPGDSENLTVSGLPERPSEPPCAFYMKTGTCKFGSTCKFNHP 227

HSP 3 Score: 101.679 bits (252), Expect = 3.283e-19
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPID-----RLTTN---EASQQAIKL-------------TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CK+GS C++NHP      P           + NL +  +                                   P+RP +  C +YMKTG CKFG  CKF+HP D      L  N   E S  A+K+                GLP R   V CP+Y+KTG+CKYG+TC+++HP
Sbjct:  157 EPDCPYFLKTQRCKFGSKCKFNHPKDKLDAP---------GDSENLTVSGL-----------------------------------PERPSEPPCAFYMKTGTCKFGSTCKFNHPKDIQIQLSLQNNVNCEQSDIAMKIGGISGDIKPALYHNSKGLPVRPDEVDCPFYLKTGSCKYGSTCRYNHP 298

HSP 4 Score: 88.5817 bits (218), Expect = 5.729e-15
Identity = 55/139 (39.57%), Postives = 69/139 (49.64%), Query Frame = -3

Query:  513 PPVALGHSLIASASNL--NIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAG--LPRREGSVHCPYYMKTGTCKYGATCKFDHP 917
            P   L H  +  A N    I     ASSL +   PRL   + L            P+YPQRPG+ +C +YM T  CKFGD CKF HPI          + +    AG  LP R G   CPY++KT  CK+G+ CKF+HP
Sbjct:   56 PSQVLYHQNVLDAQNTLGQIEAWYSASSLVKR--PRLESASNL------------PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPYWKEVPPVPAGESLPERPGEPDCPYFLKTQRCKFGSKCKFNHP 180

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A0B0PT79_GOSAR (Zinc finger CCCH domain-containing 37-like protein OS=Gossypium arboreum GN=F383_06884 PE=4 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 1.497e-108
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = -3

Query:  501 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1010
            DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQ VYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  274 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQTVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 443

HSP 2 Score: 106.686 bits (265), Expect = 6.352e-21
Identity = 57/165 (34.55%), Postives = 85/165 (51.52%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G +C+++HP                       I V       ++ + P  +  +L                P+RPG+ +C Y++KT  CKFG +CKF+HP D+L   +A   +  LT++GLP R     C +YMKTGTCK+G+TCKF+HP
Sbjct:  105 EKDCAHYMLTRTCKFGDSCKFDHP-----------------------IWVPEGGIPYWKEVPPVPAGESL----------------PERPGEPDCPYFLKTQRCKFGSKCKFNHPKDKL---DAPGDSENLTVSGLPERPSEPPCAFYMKTGTCKFGSTCKFNHP 227

HSP 3 Score: 101.679 bits (252), Expect = 3.253e-19
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPID-----RLTTN---EASQQAIKL-------------TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CK+GS C++NHP      P           + NL +  +                                   P+RP +  C +YMKTG CKFG  CKF+HP D      L  N   E S  A+K+                GLP R   V CP+Y+KTG+CKYG+TC+++HP
Sbjct:  157 EPDCPYFLKTQRCKFGSKCKFNHPKDKLDAP---------GDSENLTVSGL-----------------------------------PERPSEPPCAFYMKTGTCKFGSTCKFNHPKDIQIQLSLQNNVNCEQSDIAMKIGGISGDIKPALYHNSKGLPVRPDEVDCPFYLKTGSCKYGSTCRYNHP 298

HSP 4 Score: 88.5817 bits (218), Expect = 5.991e-15
Identity = 55/139 (39.57%), Postives = 69/139 (49.64%), Query Frame = -3

Query:  513 PPVALGHSLIASASNL--NIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAG--LPRREGSVHCPYYMKTGTCKYGATCKFDHP 917
            P   L H  +  A N    I     ASSL +   PRL   + L            P+YPQRPG+ +C +YM T  CKFGD CKF HPI          + +    AG  LP R G   CPY++KT  CK+G+ CKF+HP
Sbjct:   56 PSQVLYHQNVLDAQNTLGQIEAWYSASSLVKR--PRLESASNL------------PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPYWKEVPPVPAGESLPERPGEPDCPYFLKTQRCKFGSKCKFNHP 180

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A061FIL4_THECC (Floral homeotic protein isoform 5 OS=Theobroma cacao GN=TCM_033706 PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 6.602e-89
Identity = 144/173 (83.24%), Postives = 154/173 (89.02%), Query Frame = -3

Query:  501 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVA-LGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLT--TNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1010
            DEVDCPFYLKTGSCKYGS+CRYNHPDRNAF PP A LGHSL+ASASNLNIGVV PA+S+YQTIDPRL Q+TLLAQ T PTL     VYPQRPGQTEC+YYMKTG+CKFGDRCKFHHPIDR    T + S+QA+KLTLAGLPRREG VHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  192 DEVDCPFYLKTGSCKYGSSCRYNHPDRNAFNPPAAVLGHSLVASASNLNIGVVTPAASIYQTIDPRLGQSTLLAQPTFPTLGVAPTVYPQRPGQTECEYYMKTGDCKFGDRCKFHHPIDRSVSKTKQTSEQAVKLTLAGLPRREGGVHCPYYMKTGTCKYGATCKFDHPPPGE 364

HSP 2 Score: 103.219 bits (256), Expect = 5.311e-20
Identity = 61/186 (32.80%), Postives = 82/186 (44.09%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQA-----------------IKLTL----AGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CK+GS C++NHP              L  S +  NI V                                  V P+RP +  C +Y+KTG+CKFG  CKFHHP D    +     A                 +K  L     GLP R   V CP+Y+KTG+CKYG++C+++HP
Sbjct:   75 EPDCPYFLKTQRCKFGSKCKFNHPK-----------DKLAISGAFENIQVA---------------------------------VLPERPSEPSCSFYVKTGKCKFGATCKFHHPKDIQIASSGQDNARGEQPEIVTKTGGATADVKPALFHNSKGLPIRPDEVDCPFYLKTGSCKYGSSCRYNHP 216

HSP 3 Score: 88.1965 bits (217), Expect = 4.412e-15
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = -3

Query:  513 LVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 773
            L  T    P+R G+ +C Y++KT  CKFG +CKF+HP D+L  + A +    + +A LP R     C +Y+KTG CK+GATCKF HP
Sbjct:   62 LATTSESLPERAGEPDCPYFLKTQRCKFGSKCKFNHPKDKLAISGAFEN---IQVAVLPERPSEPSCSFYVKTGKCKFGATCKFHHP 145

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A061FAF2_THECC (Floral homeotic protein isoform 1 OS=Theobroma cacao GN=TCM_033706 PE=4 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 5.881e-88
Identity = 144/173 (83.24%), Postives = 154/173 (89.02%), Query Frame = -3

Query:  501 DEVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVA-LGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLT--TNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1010
            DEVDCPFYLKTGSCKYGS+CRYNHPDRNAF PP A LGHSL+ASASNLNIGVV PA+S+YQTIDPRL Q+TLLAQ T PTL     VYPQRPGQTEC+YYMKTG+CKFGDRCKFHHPIDR    T + S+QA+KLTLAGLPRREG VHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  280 DEVDCPFYLKTGSCKYGSSCRYNHPDRNAFNPPAAVLGHSLVASASNLNIGVVTPAASIYQTIDPRLGQSTLLAQPTFPTLGVAPTVYPQRPGQTECEYYMKTGDCKFGDRCKFHHPIDRSVSKTKQTSEQAVKLTLAGLPRREGGVHCPYYMKTGTCKYGATCKFDHPPPGE 452

HSP 2 Score: 103.219 bits (256), Expect = 1.272e-19
Identity = 61/186 (32.80%), Postives = 82/186 (44.09%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQA-----------------IKLTL----AGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CK+GS C++NHP              L  S +  NI V                                  V P+RP +  C +Y+KTG+CKFG  CKFHHP D    +     A                 +K  L     GLP R   V CP+Y+KTG+CKYG++C+++HP
Sbjct:  163 EPDCPYFLKTQRCKFGSKCKFNHPKDK-----------LAISGAFENIQVA---------------------------------VLPERPSEPSCSFYVKTGKCKFGATCKFHHPKDIQIASSGQDNARGEQPEIVTKTGGATADVKPALFHNSKGLPIRPDEVDCPFYLKTGSCKYGSSCRYNHP 304

HSP 3 Score: 95.9005 bits (237), Expect = 3.206e-17
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G +C+++HP    ++P                                   +  +   + +P L  T    P+R G+ +C Y++KT  CKFG +CKF+HP D+L  + A +    + +A LP R     C +Y+KTG CK+GATCKF HP
Sbjct:  111 EKDCAHYMLTRTCKFGDSCKFDHP---IWVP-----------------------------------EGGIPDWKEVP-LATTSESLPERAGEPDCPYFLKTQRCKFGSKCKFNHPKDKLAISGAFEN---IQVAVLPERPSEPSCSFYVKTGKCKFGATCKFHHP 233

HSP 4 Score: 89.7373 bits (221), Expect = 2.571e-15
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = -3

Query:  513 PVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKL--TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 758
            P+YPQRPG+ +C +YM T  CKFGD CKF HPI          + + L  T   LP R G   CPY++KT  CK+G+ CKF+HP
Sbjct:  103 PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPLATTSESLPERAGEPDCPYFLKTQRCKFGSKCKFNHP 186

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: A0A067KR25_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06908 PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 6.788e-76
Identity = 127/171 (74.27%), Postives = 143/171 (83.63%), Query Frame = -3

Query:  501 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVA-LGHSLIAS-ASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1007
            E DCPFYLKTGSCKYG+TCRYNHPDRNA  PP A + H ++A+ A+NLNIGV+NPA+SLYQTIDPRL+Q         P L     +YPQRPGQTECD+YMKTGECKFG+RCKFHHPI+R    +A QQA+KLTLAGLPRREG+VHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  281 EADCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAISHPIVANPAANLNIGVINPAASLYQTIDPRLAQ---------PMLGVGSIIYPQRPGQTECDFYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGE 442

HSP 2 Score: 101.293 bits (251), Expect = 4.129e-19
Identity = 65/194 (33.51%), Postives = 83/194 (42.78%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPID------RLTTN-----------------EASQQAIKLTLA------GLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CKYG  C++NHP             +L    S  N G                                     P+RP +  C +YMKTG+CKFG  CKFHHP D      + T N                    + +I LT A      GLP R G   CP+Y+KTG+CKYGATC+++HP
Sbjct:  154 EPDCPYFLKTKRCKYGLNCKFNHPKDKL---------ALFQGGSEDNDGFA----------------------------------LPERPSEPTCAFYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQIGSTVTMEGTTGDFNVVKASISLTPALGHNSKGLPIRLGEADCPFYLKTGSCKYGATCRYNHP 304

HSP 3 Score: 91.6633 bits (226), Expect = 5.560e-16
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G +C+++HP    ++P   +                           P   +  L+A+  M +L       P+RP + +C Y++KT  CK+G  CKF+HP D+L   +   +        LP R     C +YMKTG CK+GATCKF HP
Sbjct:  102 EKDCAHYMLTRTCKFGDSCKFDHP---VWVPEGGI---------------------------PNWKEVPLIAE--MESL-------PERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSE--DNDGFALPERPSEPTCAFYMKTGKCKFGATCKFHHP 225

HSP 4 Score: 87.4261 bits (215), Expect = 1.239e-14
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = -3

Query:  513 TTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLT--LAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 806
            T+ LA++         P+YPQRPG+ +C +YM T  CKFGD CKF HP+        + + + L   +  LP R     CPY++KT  CKYG  CKF+HP
Sbjct:   78 TSSLAKRYRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPNWKEVPLIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHP 177

HSP 5 Score: 85.5001 bits (210), Expect = 5.002e-14
Identity = 61/206 (29.61%), Postives = 86/206 (41.75%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFI------PPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDR-------------LTTNEASQ-------------QAIKLTLAG---------LPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E  C FY+KTG CK+G+TC+++HP              V +G ++    +  +  VV  + SL                   P L       P R G+ +C +Y+KTG CK+G  C+++HP DR             +  N A+              Q I   LA           P+R G   C +YMKTG CK+G  CKF HP
Sbjct:  202 EPTCAFYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQIGSTVTMEGTTGDFNVVKASISL------------------TPALGHNSKGLPIRLGEADCPFYLKTGSCKYGATCRYNHP-DRNAINPPAAAISHPIVANPAANLNIGVINPAASLYQTIDPRLAQPMLGVGSIIYPQRPGQTECDFYMKTGECKFGERCKFHHP 388

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: V4S9N1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100047901mg PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.391e-74
Identity = 124/172 (72.09%), Postives = 138/172 (80.23%), Query Frame = -3

Query:  501 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVA-LGHSLIAS-ASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQP-VYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1007
            E+DCPFYLKTGSCKYGSTCRYNHP+R A  PP A + H LI S A++L I VV+PA+SLYQTIDPRL+Q TL          G  P +YPQRPGQ ECDYYMKTG CKFG++CKFHHPIDR      SQ+ +KLTLAGLPRREG+VHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:    2 ELDCPFYLKTGSCKYGSTCRYNHPERTAINPPAAAIVHPLITSPAASLGISVVSPAASLYQTIDPRLAQATL----------GVSPSLYPQRPGQMECDYYMKTGVCKFGEKCKFHHPIDRSAAKTPSQETVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGE 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: B9SRN9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0479530 PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 7.732e-71
Identity = 124/173 (71.68%), Postives = 138/173 (79.77%), Query Frame = -3

Query:  501 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVA-LGHSLIAS-ASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRL--TTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1007
            EVDCPFYLKTGSCKYG+TCRYNHPDRNA  PP A +GH L+AS A+NLN+G +NPA+S+YQ I P  S   L    T         +YPQRPG  ECDYYMKTGECKFG+RC+FHHPIDR   T  +A QQA+KLTLAGLPRREG+VHCPYYMKTGTCKYGATCKFDHPPPGE
Sbjct:  310 EVDCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAIGHPLLASPAANLNLGDINPAASIYQAIYPSFSSPMLGVGPT---------IYPQRPGHAECDYYMKTGECKFGERCRFHHPIDRSAPTATQAQQQAVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGE 473

HSP 2 Score: 104.76 bits (260), Expect = 4.546e-20
Identity = 67/194 (34.54%), Postives = 86/194 (44.33%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPID----------RLTTNEAS-------------------QQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CKYGS C++NHP        +ALG    +S SN    +                                    P+RP +  C +Y KTG CKFG  CKFHHP D           +  NEA+                    QA+     GLP R G V CP+Y+KTG+CKYGATC+++HP
Sbjct:  185 EPDCPYFLKTQRCKYGSKCKFNHPKDE-----LALG----SSQSNDVFAL------------------------------------PERPSEPICAFYAKTGRCKFGATCKFHHPKDIQIALGQENCNIMQNEAAAMTHGTTGDVNAVKACISFNQALLHNSKGLPIRPGEVDCPFYLKTGSCKYGATCRYNHP 333

HSP 3 Score: 94.7449 bits (234), Expect = 7.774e-17
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G +C+++HP    ++P                 G+ N                     + +P    T+P+ P+RPG+ +C Y++KT  CK+G +CKF+HP D L    +    +      LP R     C +Y KTG CK+GATCKF HP
Sbjct:  133 EKDCAHYMLTRTCKFGDSCKFDHP---VWVP---------------EGGIPN--------------------WKEVPLAATTEPL-PERPGEPDCPYFLKTQRCKYGSKCKFNHPKDELALGSSQSNDV----FALPERPSEPICAFYAKTGRCKFGATCKFHHP 254

HSP 4 Score: 89.7373 bits (221), Expect = 3.451e-15
Identity = 64/202 (31.68%), Postives = 90/202 (44.55%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQ--TIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQ---------AIKLTLAGL--------------------------PRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E  C FY KTG CK+G+TC+++HP        +ALG        N NI + N A+++    T D    +  +   Q    L+      P RPG+ +C +Y+KTG CK+G  C+++HP DR   N  +           A  L L  +                          P+R G   C YYMKTG CK+G  C+F HP
Sbjct:  231 EPICAFYAKTGRCKFGATCKFHHPKDIQ----IALGQ------ENCNI-MQNEAAAMTHGTTGDVNAVKACISFNQ---ALLHNSKGLPIRPGEVDCPFYLKTGSCKYGATCRYNHP-DRNAINPPAAAIGHPLLASPAANLNLGDINPAASIYQAIYPSFSSPMLGVGPTIYPQRPGHAECDYYMKTGECKFGERCRFHHP 417

HSP 5 Score: 87.0409 bits (214), Expect = 2.261e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = -3

Query:  513 VYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKL--TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 755
            +YPQRPG+ +C +YM T  CKFGD CKF HP+        + + + L  T   LP R G   CPY++KT  CKYG+ CKF+HP
Sbjct:  126 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPNWKEVPLAATTEPLPERPGEPDCPYFLKTQRCKYGSKCKFNHP 208

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Match: B9HYE1_POPTR (Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0010s18390g PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.711e-70
Identity = 124/174 (71.26%), Postives = 139/174 (79.89%), Query Frame = -3

Query:  501 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVA-LGHSLIA-SASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPV-YPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRL--TTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHPPPGE 1007
            EVDCPFYLKTGSCKYG+TCRYNHP+R A  PP A +GH ++A S +NLN GV NPA+S+YQTIDPRLS            ++G  P  YPQRPGQTECD+YMKTGECKFG+RCKFHHPIDR   T  +  QQ +KLTLAGLPRREG+VHCPYYMKTG CKYGATCKFDHPPPGE
Sbjct:  348 EVDCPFYLKTGSCKYGATCRYNHPERTAINPPAAAIGHPIVAPSLANLNFGVFNPAASIYQTIDPRLS------------MLGVGPTFYPQRPGQTECDFYMKTGECKFGERCKFHHPIDRSAPTEKQIQQQTVKLTLAGLPRREGAVHCPYYMKTGACKYGATCKFDHPPPGE 509

HSP 2 Score: 106.301 bits (264), Expect = 1.984e-20
Identity = 64/193 (33.16%), Postives = 85/193 (44.04%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHP-----------------IDRLTTNEASQQAIKLTLA-----------GLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DCP++LKT  CKYG  C++NHP        ++LG S  +S S L                                        P+RP +  C +YMKTG+CKFG  CKFHHP                  D +  NE     + +  +           GLP R G V CP+Y+KTG+CKYGATC+++HP
Sbjct:  224 EPDCPYFLKTQRCKYGLNCKFNHPKEK-----LSLGDSENSSVSAL----------------------------------------PERPSEPPCAFYMKTGKCKFGASCKFHHPKDIQIPLSGLGNDNGVQTDSVVKNEGITGDVDVIYSPVTPALHHNSKGLPIRLGEVDCPFYLKTGSCKYGATCRYNHP 371

HSP 3 Score: 99.3673 bits (246), Expect = 2.856e-18
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNLNIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKLTLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E DC  Y+ T +CK+G TC+++HP    ++P   +                           P   +  L+A         T   +P+RPG+ +C Y++KT  CK+G  CKF+HP ++L+  ++   ++    + LP R     C +YMKTG CK+GA+CKF HP
Sbjct:  172 EKDCAHYMLTRTCKFGDTCKFDHP---VWVPEGGI---------------------------PDWKEVPLIA---------TSETFPERPGEPDCPYFLKTQRCKYGLNCKFNHPKEKLSLGDSENSSV----SALPERPSEPPCAFYMKTGKCKFGASCKFHHP 293

HSP 4 Score: 92.4337 bits (228), Expect = 5.317e-16
Identity = 59/200 (29.50%), Postives = 92/200 (46.00%), Query Frame = -3

Query:  513 EVDCPFYLKTGSCKYGSTCRYNHPDRNAFIPPVALGHSLIASASNL--NIGVVNPASSLYQTIDPRLSQTTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQ--------------------------QAI--KLTLAGL-----PRREGSVHCPYYMKTGTCKYGATCKFDHP 1007
            E  C FY+KTG CK+G++C+++HP ++  IP   LG+       ++  N G+      +Y  + P L   +                 P R G+ +C +Y+KTG CK+G  C+++HP +R   N  +                           Q I  +L++ G+     P+R G   C +YMKTG CK+G  CKF HP
Sbjct:  270 EPPCAFYMKTGKCKFGASCKFHHP-KDIQIPLSGLGNDNGVQTDSVVKNEGITGDVDVIYSPVTPALHHNS--------------KGLPIRLGEVDCPFYLKTGSCKYGATCRYNHP-ERTAINPPAAAIGHPIVAPSLANLNFGVFNPAASIYQTIDPRLSMLGVGPTFYPQRPGQTECDFYMKTGECKFGERCKFHHP 453

HSP 5 Score: 87.0409 bits (214), Expect = 2.291e-14
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = -3

Query:  513 TTLLAQQTMPTLVGTQPVYPQRPGQTECDYYMKTGECKFGDRCKFHHPIDRLTTNEASQQAIKL--TLAGLPRREGSVHCPYYMKTGTCKYGATCKFDHP 806
            T  LA++         P+YPQRPG+ +C +YM T  CKFGD CKF HP+          + + L  T    P R G   CPY++KT  CKYG  CKF+HP
Sbjct:  148 TNSLAKRVRFETTSHFPIYPQRPGEKDCAHYMLTRTCKFGDTCKFDHPVWVPEGGIPDWKEVPLIATSETFPERPGEPDCPYFLKTQRCKYGLNCKFNHP 247

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 21


Match Name	E-value	Identity	Description
C3H13_ARATH	2.187e-14	42.17	Zinc finger CCCH domain-containing protein 13 OS=A...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094227 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2W652_GOSRA	1.003e-109	99.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2VFH2_GOSRA	1.723e-109	99.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SE64_GOSRA	2.351e-109	99.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PT79_GOSAR	1.497e-108	99.41	Zinc finger CCCH domain-containing 37-like protein...	[more]
A0A061FIL4_THECC	6.602e-89	83.24	Floral homeotic protein isoform 5 OS=Theobroma cac...	[more]
A0A061FAF2_THECC	5.881e-88	83.24	Floral homeotic protein isoform 1 OS=Theobroma cac...	[more]
A0A067KR25_JATCU	6.788e-76	74.27	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
V4S9N1_9ROSI	1.391e-74	72.09	Uncharacterized protein (Fragment) OS=Citrus cleme...	[more]
B9SRN9_RICCO	7.732e-71	71.68	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9HYE1_POPTR	1.711e-70	71.26	Enhancer of AG-4 1 family protein OS=Populus trich...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 94..121 e-value: 2.2E-6 score: 37.2 coord: 44..71 e-value: 2.1E-7 score: 40.6
IPR000571	Zinc finger, CCCH-type	GENE3D	4.10.1000.10		coord: 50..71 e-value: 3.8E-7 score: 29.0 coord: 100..119 e-value: 1.6E-6 score: 27.0
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 46..70 e-value: 4.8E-12 score: 45.3 coord: 100..121 e-value: 4.6E-11 score: 42.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 94..122 score: 15.845
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 44..72 score: 15.723
IPR000571	Zinc finger, CCCH-type	SUPERFAMILY	90229	CCCH zinc finger	coord: 97..121
IPR000571	Zinc finger, CCCH-type	SUPERFAMILY	90229	CCCH zinc finger	coord: 45..74
None	No IPR available	PANTHER	PTHR12547:SF63	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37-RELATED	coord: 1..126
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 1..126

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094227 ID=g.barbadense_cottongen_reftransV1_0094227; Name=g.barbadense_cottongen_reftransV1_0094227; organism=Gossypium barbadense; type=contig; length=3073bp
AGGGACCAAACCATATCCGATCATAAGAAAATCTGAAAATTCAACTGATC
CTGAAATATATCTAAATGGAAATTCAAAATTATTCAGATGCCAGAAAACC
ATAAAAGATTTCTACCCGACGAAAATGAGCCAACATCATGTGGATGATGA
ATAACTCAATCTTCCAATCCAATACTTCAATTTCAAACGGGAACATAAAA
TTGCCAAATATCTACTAGTCCAAACACCAATACAACTGCAAGCAACAATT
CAACTACTACCATGGCATTGTGTTCTCAAAAATTAATTGACAAATACATT
AAATTCACATGGTCCACTCTAGGTACATTCATATTGCCCATCCACTCTAG
GCATCATGCTAACAGACCTTGATACAGAAAGCCCTATAAACCCAGCTAAA
TCGTCATCACAAAGTAGCTTCCCGTAGCTGAGTTTCCATATCATGTTCCT
CATCCCGACATTGTTGTGGATGTTCCTTGTACTCCAGTCACAGACATGAC
CTCCCCAGGGGGCGGGTGATCAAATTTGCATGTTGCACCATACTTGCATG
TTCCAGTTTTCATGTAGTATGGACAATGAACAGATCCCTCTCTCCTAGGT
AATCCTGCAAGAGTGAGCTTAATAGCTTGCTGAGAAGCTTCGTTGGTTGT
TAACCGATCAATGGGGTGATGGAACTTGCATCTATCTCCAAACTTACATT
CCCCTGTCTTCATATAGTAATCACATTCAGTCTGTCCAGGTCTCTGAGGA
TACACAGGTTGAGTCCCTACCAACGTTGGCATTGTTTGCTGAGCAAGTAG
AGTTGTCTGACTTAATCTGGGGTCAATTGTTTGATATAGAGAAGAAGCTG
GATTAACAACTCCAATGTTCAGATTACTGGCAGATGCTATAAGGGAATGG
CCTAGTGCTACAGGAGGAATGAATGCATTCCTATCAGGATGATTGTACCG
GCAAGTAGAACCATACTTGCAACTGCCAGTTTTAAGGTAGAATGGGCAAT
CTACTTCATCCTGTCAAAAGCAAGCATACGTTATCTATGAGCTCTTCATA
AACCATGTACTTAAGTTCATAGGAAATACAGTACCTAACTACCACGAAAA
GTGAATAAATGGACAAAGCAAACAACTGTAATGTTGATTAAGCCCTTTTT
TCCTAAATATATGTATGAATAAACATTCTAAAGCTTGAAACAACATCCTC
CAACATCTATTTTGTGTTTCTTCAATTTCATATCTCATCAAAAGAAATTT
GACATAAAATGAATCTAAGCAAACATCAAAATTGAGAATAAATTGAAATT
TATAACAGAAAAATCAACACAAACTATTCTTTTATAAACCAGTCTCATAT
CAAGGACCAGACCAGCCACACTCTCCTGGAACCATCTGGCTTATTGATCT
GACAACATATATGGAACCGTCAAAATGGATCAAGAAATAGATGAACCAAT
GAAATTGTAAGCCATTGAACCAGAATTAAGCCAAATGGATTTTGAGATTG
AGCTTTAACAACTTAAAGACTTTCTAGCCTAAATCTTAAATTTCTGCACT
CATAATTCATAAATTAAAGTTTAATCTACCACCAGCCAAAAACTTCAGGT
TACCTAGCAGGTTACTGAATCATATAAAAAAGCATAACTTTGAAGCTAGA
TCTACAGTTTTCCCATCATCCAAAAAAACCACCACAGCTTCAACCAGTTA
TGTAAATGAAGCTTTAAAGAGAAGATTAGGGCTGTACAGTTACCTACTCT
AAATTTAGTAATGAAGCTTACCATAGGGCTTTAGTTGCAGAGAAATTACT
AGGACTGTTTCCCAACATTGGACTTCATTTCAGTTTGACAGGTGTGGCCA
ATCTAGACGAGTCTTTATTCTCAAAAGTCAAAAATAATAGCAGTACAATG
AATATGGAATTTTCTTCATTTAATCCAACTGCTGGTTAAAAGGGATTACA
GTGGTTCTTCAATTTAGTGTTCTCAAGTTCATTGTCAAGACCATAGAGCT
TTGAATGTCAGGAAGACCACAACGAACATTGCAGACCAAGACTTTGAGGA
ACCTTTAGATAGAAATGTACAACTACTAGATCCTATTGAATACCTAAGAA
TAAACTTGATCTTGGAAAGGATAGTATAGCCCACCAAATTAATATGATAA
GAGGTGATTTGGATGTTAGAGGCAGCTTAGAGGGTTGTAACTGGAATGAG
ATCATCAACAAAGATGGTCTACCCACTGAGTGTACAAGTGAAGTCCCTTT
AGAGTGTTATTTATCAAAAATATATTGGTAAATTGTGATTTGAAGTTTGT
TGTGGTAGGGCTGATCCTATGTTTGAACATAAATTTCCTGATAGAGTTCA
TTTCCCTGCCTCCTTGAAATCAATACCACAAACCTCTTGATTTTAATCTT
CCGCAAGACAGTTCCAATTATTAGAATGCTTCTAACCAATTGTTTTATTT
GCTAGTATTCCTAAACAAAATTGTCCAGTGGCAGGGATTCTTGATGTGCT
TGCTGCTTCTTGCCTTGACAACTATCAACATTCCATTTGTTTTGCTCTTT
TTATGGATTTTCTAAAGCAGACAGTATTTGCATTCTAACTTTCCACAGTC
AAGTTTTTTAATTCGGGAGAGAATGACATTCACTATTTAAGACATATTTT
ATTAGTGTTATTTCTAATTTGGGATATACATGGCACTTAGCATTTTATTA
TGGTTTTTAGTTTGCTTATAATACATATGTTATTTTTGTTTCAATTAGGT
TCCAGATGAAGAATATTTGAGTCATTGTGATTTTCTTCCCTTGTTGATTG
TATTCTGTTTTCTCCATATTTCTGTTTCTGCCAAAATTTCCTCTATTACT
CTAGATTTGTTTCAGTCTATTTCTGCAATTTCTGTTCTATATTTAACTTC
TTTTCCCTACTTATTCTACATCACTGATGCACCAAATATTTACTAAAAGG
GAAAAATGAATGCATGCCAGATCTACACATTACCGGTCTTACTGGAAGTC
CTATATTTAATTCCTTTTCCCTACCTATTCTACATCACTGATGCACCTAC
TATTTACTAAAAGGGAAAAATGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

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g.barbadense_cottongen_reftransV1_0094227, g.barbadense_cottongen_reftransV1_0094227 (contig) Gossypium barbadense

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