g.barbadense_cottongen_reftransV1_0094223, g.barbadense_cottongen_reftransV1_0094223 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094223
Unique Name	g.barbadense_cottongen_reftransV1_0094223
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	4205

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt11	chromosome	g.barbadense_cottongen_reftransV1_0094223:4..4205 . Dt11:5644265..5650082 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy Swiss-Prot
Match: S23A3_MOUSE (Solute carrier family 23 member 3 OS=Mus musculus GN=Slc23a3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.237e-9
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 1

Query: 2947 TKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQ 3381
            T  +G Y     L+   PP P   SRG++LEG  S+LAG+ GS  G+ +   N  T+++ +  SRR      LF +   +  ++  +  SIPL +   +L    A+V++ G S+       S RN+ IVG S+F+ L +P + ++
Sbjct:  332 TSSLGCYALCGQLLRLSPPPPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWLRE 476

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BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: V7CLW7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G146700g PE=4 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 2.925e-119
Identity = 215/344 (62.50%), Postives = 252/344 (73.26%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQVS 3477
            ++ +L+L GI   GRH + R   VPLS+TI WIYA FLTAGGAY+YKGC+P IPSSNIL+D CRKHAYTM+HCR D SNA  TAAWVRIPYPLQWG+PIFHFRTS+IM+IV+LVASVDS                                                   VGTY + SL V+S+PPTPGVVSRGIALEGFCS+LAG+WGSGTGSTTLTEN HTI+ITK+ASR+ +V GA FLILFS +GKVGA+LASIP +LAA++LCFMWAL  A+GLS L+Y+Q+ SFRNITIVGVSLFLG+SIP YFQQYQ ES L+LPSY VPYAAAS GP  +  +Q+ 
Sbjct:  371 LIFTLYLRGISIFGRH-LFRIYAVPLSLTIIWIYASFLTAGGAYNYKGCNPNIPSSNILLDACRKHAYTMQHCRTDVSNALATAAWVRIPYPLQWGIPIFHFRTSIIMVIVALVASVDS---------------------------------------------------VGTYRATSLQVNSRPPTPGVVSRGIALEGFCSILAGLWGSGTGSTTLTENMHTIDITKVASRKVVVVGATFLILFSFIGKVGALLASIPQALAASVLCFMWALTAALGLSNLRYSQSTSFRNITIVGVSLFLGMSIPAYFQQYQAESSLILPSYLVPYAAASSGPFRSGIKQLD 662

HSP 2 Score: 301.597 bits (771), Expect = 7.174e-84
Identity = 168/208 (80.77%), Postives = 189/208 (90.87%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVY 1691
            L+ GL+DNPG+  LIYYGLQH+LSL GSL+ IP VMVP MGGTDKDTASVISTML +SGI+TILHSYFG+RLPLVQGSSF+YLAPALVIINA++YRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMS+LLRLINP+VVAPTVAAVGLAFFSYGFPQAG+C E+++P + L+LI TLYLRGISIFG  LFRIYAV  +LT   +Y
Sbjct:  196 LECGLKDNPGIVPLIYYGLQHYLSLTGSLVLIPLVMVPVMGGTDKDTASVISTMLFLSGITTILHSYFGTRLPLVQGSSFVYLAPALVIINAQEYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSVLLRLINPIVVAPTVAAVGLAFFSYGFPQAGTCPEITIPQIALILIFTLYLRGISIFGRHLFRIYAVPLSLTIIWIY 403

HSP 3 Score: 102.449 bits (254), Expect = 9.368e-19
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = 3

Query:  450 METGS-NSDSLDK---AETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIE 791
            METGS NS+SL++        G G K G +  K+EPFV + +  HNPRELRSWAKRTGFVS  SGE GT+ S  +F++           +++ GGSSPKIEIDPV+GRTR N   EIE
Sbjct:    1 METGSLNSESLNRNVAMSVRGGTGKKQGGVAGKVEPFVAQSE--HNPRELRSWAKRTGFVSDYSGEAGTSGSA-KFEAF----------ERKGGGSSPKIEIDPVVGRTRRN---EIE 102

HSP 4 Score: 76.2554 bits (186), Expect = 1.316e-10
Identity = 42/61 (68.85%), Postives = 55/61 (90.16%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            QLDF+INAL+S++MV+TLLVAF+LDNTVPG ++ERGV++WS AED++TDPSL  +YSL  K
Sbjct:  660 QLDFAINALMSLNMVITLLVAFLLDNTVPGRQEERGVFVWSRAEDISTDPSLLSEYSLSKK 720

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BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: I1J505_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 401.749 bits (1031), Expect = 3.053e-119
Identity = 216/345 (62.61%), Postives = 255/345 (73.91%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPY-AAASDGPVHTINEQVS 3477
            ++ +L+L GI   GRH + R   VPLS+TI WIYA FLTAGGAY+YKGC+P+IPSSNIL+D CRKHAYTMKHCR D SNA  TAAWVR+PYPLQWG+PIFHFRTS+IM+IVSLVASVDS                                                   VGTY + SL V+S+PPTPGVVSRGIALEGFCS+LAG+WGSGTG+TTLTEN HTI++TK+ASR+ +V GA FLI+FS +GKVGA+LASIPL+LAA++LCFMWAL  A+GLS LQY+Q+ASFRNITIVGVSLFLG+SIP YFQQYQ ES L+LPSY VPY AAAS GP  +  +Q+ 
Sbjct:  363 LIFTLYLRGISIFGRH-LFRIYAVPLSLTIIWIYASFLTAGGAYNYKGCNPDIPSSNILLDACRKHAYTMKHCRTDVSNALSTAAWVRMPYPLQWGIPIFHFRTSIIMVIVSLVASVDS---------------------------------------------------VGTYRATSLQVNSRPPTPGVVSRGIALEGFCSILAGLWGSGTGATTLTENMHTIDVTKVASRKVVVVGAAFLIMFSFIGKVGALLASIPLALAASVLCFMWALTAALGLSNLQYSQSASFRNITIVGVSLFLGMSIPAYFQQYQAESSLVLPSYLVPYAAAASSGPFRSGIKQLD 655

HSP 2 Score: 299.671 bits (766), Expect = 3.022e-83
Identity = 165/208 (79.33%), Postives = 189/208 (90.87%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVY 1691
            LK GL++NPG+ +LIYYGLQH+LSLAGSL+ IP VM+P MGGTDKDTA+VISTML +SGI+TILHSY G+RLPLVQGSSF+YLAPALVIINA++YRNLTEHKFRHIMRELQGAIIVGS+FQ ILGFSGLMS+LLRLINP+VVAPTVAAVGLAFFSYGFPQAG+C E+++P + LVLI TLYLRGISIFG  LFRIYAV  +LT   +Y
Sbjct:  188 LKCGLKENPGIVSLIYYGLQHYLSLAGSLVLIPLVMIPVMGGTDKDTATVISTMLFLSGITTILHSYLGTRLPLVQGSSFVYLAPALVIINAQEYRNLTEHKFRHIMRELQGAIIVGSVFQCILGFSGLMSILLRLINPIVVAPTVAAVGLAFFSYGFPQAGTCPEITIPQIALVLIFTLYLRGISIFGRHLFRIYAVPLSLTIIWIY 395

HSP 3 Score: 96.6709 bits (239), Expect = 6.534e-17
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRG-----NKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPN 773
            METGS S+SL++    + RG      + G +  K++ FVP+ +  HNPRELRSWAKRTGFVS  SGE GT+ S  +F++           ++R  GSSPKIEIDPV+GR R N
Sbjct:    1 METGSKSESLNRNVAMSVRGGTGKKKQQGGVAGKVDSFVPRSE--HNPRELRSWAKRTGFVSDYSGEAGTSGSA-KFEA----------LERRREGSSPKIEIDPVVGRARQN 100

HSP 4 Score: 83.1889 bits (204), Expect = 8.928e-13
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            QLDF+INAL+S++MVVTLLVAF+LDNTVPGS++ERGVY WS AED+ATDPS Q +YSLP K
Sbjct:  653 QLDFAINALMSLNMVVTLLVAFLLDNTVPGSQEERGVYQWSRAEDIATDPSQQSEYSLPKK 713

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BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A0B2PBL2_GLYSO (Nucleobase-ascorbate transporter 11 OS=Glycine soja GN=glysoja_024285 PE=4 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 3.515e-119
Identity = 216/345 (62.61%), Postives = 255/345 (73.91%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPY-AAASDGPVHTINEQVS 3477
            ++ +L+L GI   GRH + R   VPLS+TI WIYA FLTAGGAY+YKGC+P+IPSSNIL+D CRKHAYTMKHCR D SNA  TAAWVR+PYPLQWG+PIFHFRTS+IM+IVSLVASVDS                                                   VGTY + SL V+S+PPTPGVVSRGIALEGFCS+LAG+WGSGTG+TTLTEN HTI++TK+ASR+ +V GA FLI+FS +GKVGA+LASIPL+LAA++LCFMWAL  A+GLS LQY+Q+ASFRNITIVGVSLFLG+SIP YFQQYQ ES L+LPSY VPY AAAS GP  +  +Q+ 
Sbjct:  363 LIFTLYLRGISIFGRH-LFRIYAVPLSLTIIWIYASFLTAGGAYNYKGCNPDIPSSNILLDACRKHAYTMKHCRTDVSNALSTAAWVRMPYPLQWGIPIFHFRTSIIMVIVSLVASVDS---------------------------------------------------VGTYRATSLQVNSRPPTPGVVSRGIALEGFCSILAGLWGSGTGATTLTENMHTIDVTKVASRKVVVVGAAFLIMFSFIGKVGALLASIPLALAASVLCFMWALTAALGLSNLQYSQSASFRNITIVGVSLFLGMSIPAYFQQYQAESSLVLPSYLVPYAAAASSGPFRSGIKQLD 655

HSP 2 Score: 299.286 bits (765), Expect = 3.739e-83
Identity = 165/208 (79.33%), Postives = 189/208 (90.87%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVY 1691
            LK GL++NPG+ +LIYYGLQH+LSLAGSL+ IP VM+P MGGTDKDTA+VISTML +SGI+TILHSY G+RLPLVQGSSF+YLAPALVIINA++YRNLTEHKFRHIMRELQGAIIVGS+FQ ILGFSGLMS+LLRLINP+VVAPTVAAVGLAFFSYGFPQAG+C E+++P + LVLI TLYLRGISIFG  LFRIYAV  +LT   +Y
Sbjct:  188 LKCGLKENPGIVSLIYYGLQHYLSLAGSLVLIPLVMIPVMGGTDKDTATVISTMLFLSGITTILHSYLGTRLPLVQGSSFVYLAPALVIINAQEYRNLTEHKFRHIMRELQGAIIVGSVFQCILGFSGLMSILLRLINPIVVAPTVAAVGLAFFSYGFPQAGTCPEITIPQIALVLIFTLYLRGISIFGRHLFRIYAVPLSLTIIWIY 395

HSP 3 Score: 98.5969 bits (244), Expect = 1.653e-17
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRG-----NKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPN 773
            METGS S+SL++    + RG      + G +  K++ FVP+ +  HNPRELRSWAKRTGFVS  SGE GT+ S  +F++           ++R  GSSPKIEIDPV+GRTR N
Sbjct:    1 METGSKSESLNRNVAMSVRGGTGKKKQQGGIAGKVDSFVPRSE--HNPRELRSWAKRTGFVSDYSGEAGTSGSA-KFEA----------LERRREGSSPKIEIDPVVGRTRQN 100

HSP 4 Score: 83.1889 bits (204), Expect = 9.161e-13
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            QLDF+INAL+S++MVVTLLVAF+LDNTVPGS++ERGVY WS AED+ATDPS Q +YSLP K
Sbjct:  653 QLDFAINALMSLNMVVTLLVAFLLDNTVPGSQEERGVYQWSRAEDIATDPSQQSEYSLPKK 713

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A0A0L5J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114490 PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 4.395e-119
Identity = 213/357 (59.66%), Postives = 260/357 (72.83%), Query Frame = 1

Query: 2401 LPQFILLNNFGLSRKMVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ 3471
            +P  +LL        ++ +L+L G+     H + R   VPLSV I W YAFFLTAGGAY++ GCSP+IPSSNILVD CR+HAYTMKHCR D S+AWRTAAWVRIPYPLQWGVPIFH +TS+IMI+VSLV+SVDS+                                                   GTYH+ +L V++KPPTPG+VSRGIA+EGFCS+LAG+WG+G GSTTLTEN HTI++TK+A+RRAL  GA+FLI  S++GKVGA+LASIPL+LAA++LCF WAL+VA+GLSTLQY+QTAS RN+TIVGVSLFLGLSIP YFQQ+Q E+ L+LPSY VPYAAAS+GP HT N+Q
Sbjct:  402 VPHIVLL--------LIFTLYLRGVSIFS-HRVFRIYAVPLSVVIIWAYAFFLTAGGAYNFTGCSPDIPSSNILVDACRRHAYTMKHCRTDVSSAWRTAAWVRIPYPLQWGVPIFHIKTSIIMIMVSLVSSVDSI---------------------------------------------------GTYHTVALRVAAKPPTPGIVSRGIAVEGFCSILAGLWGTGAGSTTLTENVHTIHVTKVANRRALEVGAVFLIFISLIGKVGAVLASIPLALAASVLCFTWALMVALGLSTLQYSQTASIRNMTIVGVSLFLGLSIPAYFQQFQSETSLILPSYLVPYAAASNGPTHTGNKQ 698

HSP 2 Score: 291.582 bits (745), Expect = 4.223e-80
Identity = 159/198 (80.30%), Postives = 184/198 (92.93%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV 1664
            LK+G  D PG   LIYYGLQ +LSL GS++F+P ++VPAMGGTDKDTA+VIST+LLVSGI+TILHSYFG+RLPLVQGSSF+YLAPAL+I+NA++YRNLTEHKF+HIMRELQGAIIV SIFQSILGFSGLMSL LRLINP+VVAPTVAAVGLAFFSYGFPQAGSC+E+SVP ++L+LI TLYLRG+SIF HR+FRIYAV
Sbjct:  234 LKLGPTDYPGYVPLIYYGLQQYLSLVGSVVFMPLIIVPAMGGTDKDTATVISTLLLVSGITTILHSYFGTRLPLVQGSSFVYLAPALIIMNAQEYRNLTEHKFQHIMRELQGAIIVSSIFQSILGFSGLMSLFLRLINPLVVAPTVAAVGLAFFSYGFPQAGSCVEISVPHIVLLLIFTLYLRGVSIFSHRVFRIYAV 431

HSP 3 Score: 114.005 bits (284), Expect = 2.619e-22
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPK---IEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIE 791
            M+TGS +  ++K ET   RG KLGS+LP    ++ FVP+ D  HNPRELRSWA+RTGFVS  SGE  T+S  E+ + ST F + K G ++R GGSSPKIEIDP+LG+TRPN  +E+E
Sbjct:    1 MDTGSRA--MNKVETGK-RGGKLGSILPNDSTVDRFVPRTD--HNPRELRSWARRTGFVSTFSGE-ATSSVGEK-NESTRFDLEK-GLERRGGGSSPKIEIDPILGQTRPNREIEVE 109

HSP 4 Score: 74.7146 bits (182), Expect = 3.666e-10
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 3846
            Q DF  NAL+S++MVVT L+A VL+NTVPGSR ERGVYIWS AED+  DPSL   YSLP +F
Sbjct:  698 QFDFVFNALMSLNMVVTFLIAIVLENTVPGSRQERGVYIWSHAEDIKNDPSLVATYSLPKRF 759

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A072TRH3_MEDTR (Nucleobase-ascorbate transporter-like protein OS=Medicago truncatula GN=MTR_8g068550 PE=4 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 1.037e-118
Identity = 216/359 (60.17%), Postives = 256/359 (71.31%), Query Frame = 1

Query: 2401 LPQFILLNNFGLSRKMVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQVS 3477
            +PQ +L+        ++ +L L GI   G H + R   VPLS+TI WIYA FLTAGGAY+YKGC+P IPSSNIL+D C+KHAYTMKHCR D SNA  T++W+RIPYPLQWG PIFHFRT +IM+I SLVASVDS                                                   VGTYHS+SL ++ +PPTPGVVSRGIALEGFCS+LAG+WGSGTGSTTLTEN HTI+ITK+ASRR +  GA F+ILFS +GKVGA+LASIP +LAA++LCFMWAL+ A+GLSTLQY Q+ SFRNITIVGVSLFLGLSIP YFQQYQP+S L+LPSY VPYAAAS GP H+  +Q+ 
Sbjct:  394 IPQIVLV--------LIFTLHLRGISIFGNH-LFRIYAVPLSLTIIWIYASFLTAGGAYNYKGCNPNIPSSNILIDACKKHAYTMKHCRTDISNALSTSSWLRIPYPLQWGFPIFHFRTCIIMVITSLVASVDS---------------------------------------------------VGTYHSSSLRINLRPPTPGVVSRGIALEGFCSILAGLWGSGTGSTTLTENVHTIDITKVASRRVVELGAAFMILFSFMGKVGALLASIPQALAASVLCFMWALITALGLSTLQYGQSGSFRNITIVGVSLFLGLSIPAYFQQYQPQSSLILPSYLVPYAAASSGPFHSGIKQLD 692

HSP 2 Score: 286.574 bits (732), Expect = 2.055e-78
Identity = 159/208 (76.44%), Postives = 184/208 (88.46%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVY 1691
            +K GL +NPGL  L+YY LQH+LSL GSL+ IP VMVP MGGTD DTA+VISTML +SGI+TILHSYFG+RLPLVQGSSF+YLAPALVI+N+ ++RNLT HKFRHIMRELQGAIIVGS FQ ILGFSGLMSLLLR+INP VVAPTVAAVGLAFFSYGFPQAG+C+E+S+P ++LVLI TL+LRGISIFG+ LFRIYAV  +LT   +Y
Sbjct:  226 MKFGLTENPGLVPLVYYSLQHYLSLIGSLVLIPLVMVPTMGGTDNDTANVISTMLFLSGITTILHSYFGTRLPLVQGSSFVYLAPALVIMNSEEFRNLTHHKFRHIMRELQGAIIVGSTFQCILGFSGLMSLLLRIINPTVVAPTVAAVGLAFFSYGFPQAGTCMEISIPQIVLVLIFTLHLRGISIFGNHLFRIYAVPLSLTIIWIY 433

HSP 3 Score: 97.4413 bits (241), Expect = 3.658e-17
Identity = 63/118 (53.39%), Postives = 74/118 (62.71%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNK--LGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMD 797
            METGS+ D  DK +   G  NK    S   KIEPFVP++D  HNP+EL++WAK+TGFVS  S E   ASS+   DS     V     D R GG+SPKIEIDPVLG  RPN   EIE+D
Sbjct:    1 METGSSLDIFDKGKVMRGVRNKKKQDSNAIKIEPFVPRRD--HNPKELKTWAKKTGFVSDYSSEA-GASSSANLDS-----VIVVDDDHREGGNSPKIEIDPVLGIARPNRDDEIELD 110

HSP 4 Score: 68.9366 bits (167), Expect = 2.624e-8
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            QLDF+INAL+S++MVVTL VAF+L+NTVP S  ER VYIW+  +D+ATDPSL   YS+P K
Sbjct:  690 QLDFAINALMSLNMVVTLFVAFILENTVPRSSQERAVYIWTRPQDIATDPSLASAYSMPRK 750

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 21


Match Name	E-value	Identity	Description
S23A3_MOUSE	4.237e-9	31.72	Solute carrier family 23 member 3 OS=Mus musculus ...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V7CLW7_PHAVU	2.925e-119	62.50	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
I1J505_SOYBN	3.053e-119	62.61	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
A0A0B2PBL2_GLYSO	3.515e-119	62.61	Nucleobase-ascorbate transporter 11 OS=Glycine soj...	[more]
A0A0A0L5J1_CUCSA	4.395e-119	59.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A072TRH3_MEDTR	1.037e-118	60.17	Nucleobase-ascorbate transporter-like protein OS=M...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006043	Xanthine/uracil/vitamin C permease	PFAM	PF00860	Xan_ur_permease	coord: 220..405 e-value: 6.5E-24 score: 84.2
IPR006043	Xanthine/uracil/vitamin C permease	PANTHER	PTHR11119	XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER	coord: 159..405
None	No IPR available	PANTHER	PTHR11119:SF54	NUCLEOBASE-ASCORBATE TRANSPORTER 11	coord: 159..405
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..220
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 276..280
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 320..341
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 300..319
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 367..377
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 378..400
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 281..299
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 244..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 347..366
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 255..275
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 401..416
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 342..346
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 221..243
None	No IPR available	TMHMM	TMhelix		coord: 281..298
None	No IPR available	TMHMM	TMhelix		coord: 346..365
None	No IPR available	TMHMM	TMhelix		coord: 220..242
None	No IPR available	TMHMM	TMhelix		coord: 319..341
None	No IPR available	TMHMM	TMhelix		coord: 372..394
None	No IPR available	TMHMM	TMhelix		coord: 254..276

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094223 ID=g.barbadense_cottongen_reftransV1_0094223; Name=g.barbadense_cottongen_reftransV1_0094223; organism=Gossypium barbadense; type=contig; length=4205bp
AGGAAAAATCCATTTATGCCGGATATTTGTTGAAAAAGAAATAAAAGGAC
AAGGAAAGGACTGGATTCAATTTTGCCGTTACAGTGGCAACTGGGTAATT
TGCAATAATAAACTTCAACTGATAGCAACTGGCCAGCGGCAATGAAGAAG
AAAGCAGAACCAAAAAAAGTGAACAAGATAAAATAAACAAATTCCCTCAC
TTTTCACACTCACAGTTCCTACTTTCCAATTTCCTTAATAATACAAACAA
AAACATACCAAACTATTTTCCTCTGAATTTCTCCTCTTTCCCTGCACCGA
TCTGCCTTTACTTAGTTTCTACATTTCCTTCTCTCTTTTATTTTTTTCTC
GGTTTTTCTTGGTAGTTCACTGAGGTCCTTTTAATAGTCATTCGTTTTTT
TTGTGTGTGTGTGGGGAAAGAATTGGTACGCATTTGAGAAGAAGCTGAAA
TGGAAACTGGGTCGAACTCAGATTCACTAGACAAGGCAGAGACTTCAAAT
GGAAGAGGCAACAAGCTTGGTTCAATGTTACCAAAGATTGAACCTTTTGT
GCCTAAAAAAGATCAAAACCATAACCCAAGAGAGTTAAGATCTTGGGCTA
AAAGAACCGGTTTCGTCTCTCACTTATCTGGAGAAACCGGCACTGCTAGT
TCTACTGAAAGATTCGACAGTTCCACTGGGTTTCATGTGGGAAAAAGTGG
CCGTGATCAAAGAGCAGGCGGGTCATCTCCGAAAATAGAGATTGATCCGG
TTTTGGGCCGGACTAGACCCAATATGGGTGTTGAAATTGAAATGGATTCA
GGTTCTGGGTCCGGATCCAGACAAGGAAGGAAGACAGTTGCAGATGGGAA
TGGTTTGGGAGAGAAAGTTGAGGAAAGGAAAGTTGGGTTAAACGGGAATG
GGGTGGAAAATGGGAATGGGAATGGGAAAGGAAATGGAGTTGCAAGTGTT
ACACCACTAGTTGTTGAAGAGAAGGATGAGGAAGGAAAGGGTGGAAGGGA
TGTGGAAATTGGGATGTATCCAGAAGGTGAAGAGCAGGGTCATGAAGGGG
GGAATGGTCATCATCCCGGGTTGAAGGTTGGGTTGAGAGATAATCCGGGT
TTGGGAGCACTAATATATTATGGCCTGCAGCACTTTTTATCATTGGCGGG
TTCGCTTATATTCATTCCATCAGTTATGGTACCAGCCATGGGCGGAACAG
ATAAAGATACTGCCAGTGTGATTTCTACAATGCTGCTAGTTTCTGGCATT
AGTACAATTCTGCACTCCTACTTTGGTTCCCGGCTTCCATTAGTTCAAGG
AAGTTCATTCATCTATCTGGCACCAGCGCTAGTTATCATCAATGCTCGGG
ATTATAGAAATCTCACAGAACATAAATTCAGGCACATAATGAGAGAGCTG
CAAGGAGCTATTATTGTTGGTTCAATATTCCAAAGTATCTTAGGATTCAG
TGGATTGATGTCTCTTTTACTGAGATTGATTAACCCAGTTGTGGTTGCAC
CAACTGTTGCCGCTGTGGGTTTAGCATTCTTTAGTTATGGCTTTCCACAA
GCTGGTAGTTGTATAGAAGTCAGTGTTCCCTTGTTGTTGTTGGTTCTTAT
ATGTACCCTGTATCTTCGAGGAATATCCATTTTTGGGCACCGATTGTTTC
GAATATATGCAGTACGTACTCTCACCTATCATCTTGTTTATACTTTTTAA
ACCTTGACCTCAATTTTGTTTTTAATATCTAGTGTTACTCACGAGCTACC
CTTTCTTGAGTTCCTTCTTTGGGGTAATGAGCTATCAGCTAAAAGCTAAC
CGGCTATCTGCCGTAAAAGTTTCTCACTTCATTATGATGAAAGCCTAATA
GTGGTGGATGACAAGATAATTTGTTGCTTCTTGTCATGTTTGTTTTGTTA
CCATTGTTTACCAATTGTTTATCACCCCATGTTATCAGTGAAGGTGTTTT
TATCTAGTTTTTTTGTGGTGTGGTTAAAGGACCCCTCTGTCCTGAAAATG
CCCCAAGCTCTATTTAATTCAGTTTCCTTAAAAATTGAACTTATTTTACT
GTCAAGCAATACATTCTTTGTACCATTGCATCGTCTAATTGAGTCGGAAA
TGGGATGTAATATGGATTTGTCATATAGATCTAACTGAGTCGGAATGTCC
TTCATAAGAATGATTAAGGTCACATTGCTCTCAAAAGTTTAAAAAAAGAA
GATGAAAACTACCATGTGAATGATCTTTCTTCTTTCTTTCACTACTCCTA
TTCAAGGATTAATTTGTGTCTGTTCCATCAGCCATTACGGAAGCTGAATT
TTTTTACCCATGAAAAGCTGTTTAGCAGTGCTTCCCAAGGAAAGGTCTTT
CTTACCCTACCATAGTTGAAGTAGAATCACAATATTAAGTGTTTAAAAAG
TTACCGCAGTTCATTTTGTTGAACAACTTTGGTTTGTCCAGGAAAATGGT
AGATTCTTTGTTTTTGGTAGGGATATTCTTTGTTGGACGTCATGTCATTG
TTCGATCACTGCAGGTTCCTCTTAGTGTTACAATCACTTGGATATATGCA
TTCTTTCTGACAGCCGGAGGAGCTTATGATTATAAAGGATGCAGTCCCGA
GATTCCCAGTTCAAACATTTTAGTTGATGAGTGTAGAAAACATGCATATA
CCATGAAGCATTGCAGAGCTGATGCTTCAAACGCATGGAGAACTGCTGCA
TGGGTCAGAATTCCGTACCCTTTACAGTGGGGTGTCCCTATCTTCCATTT
CCGGACGTCTTTGATTATGATCATTGTGTCACTTGTTGCATCGGTAGATT
CGGTTAGTATTTATTGTGTGCCAAAATATCGTATCAAATGGACTGTGTGA
TGGAAATACTTTATTTAACATTTAATATCTGTAAATTTAAGACACTGAAC
AAGAAATAAGGATAATGGCCCTTACATTGATGCTTGTGATACAATTACTA
AGCAGGTCGGAACATATCACTCTGCCTCTTTGCTAGTCAGTTCGAAGCCT
CCAACTCCTGGAGTAGTTAGCAGAGGCATTGCTTTGGAAGGTTTCTGTAG
CCTGCTTGCTGGAATTTGGGGTTCGGGTACTGGCTCAACAACTTTGACAG
AGAATACACATACGATAAACATAACAAAGATGGCAAGCCGAAGAGCTTTG
GTATTTGGGGCACTTTTCTTGATCCTCTTCTCAGTTGTCGGAAAAGTGGG
TGCAATTCTTGCTTCAATACCACTGTCCTTGGCTGCTGCAATTTTGTGCT
TCATGTGGGCCCTTGTTGTGGCTGTAGGCCTCTCAACCTTGCAATACACG
CAAACAGCAAGTTTTAGGAACATAACCATAGTTGGGGTGTCCTTGTTTCT
TGGTTTATCCATTCCTACTTATTTCCAACAGTACCAACCCGAGTCAATTT
TGATGCTGCCAAGTTATTTTGTTCCGTATGCAGCTGCATCAGATGGACCA
GTCCACACCATTAATGAACAAGTAAGTTGAAGTTGTGCATATTTTTGAAT
CTTGATATAGATTGCCGCCATTCTAGTTGCTAAGCTGATGATACATAGAT
ATGCAGACACTTATCCCAGGTTTCTTTGATTTTATGATTTATGATGTCTT
TCTTGATTTCCTTAATTGTATGAAAAAAAAAGTTTTAACAAGTTTGTTTT
ATGAACATGTCAGCTTGATTTTTCTATAAATGCACTCTTGTCTATGAGCA
TGGTGGTTACACTCTTGGTAGCATTTGTACTCGACAACACAGTTCCAGGC
AGCCGGGACGAACGAGGGGTGTACATTTGGTCATGTGCTGAAGATGTCGC
AACTGATCCATCCTTGCAATTGGATTACTCTCTGCCAGGAAAATTTTCCT
CACTTTGTTGTCGTTCTAGCTGTTTGCGGGCATAATCCTCAGCAGAAGGT
AGCTTGTTCTTCAACTTGAAGTTTCTTTCCGAAAAGGTAAGTTTTGTTAC
GGAAGGGCACTTCCTCAATAGTACGCATAACCAAGCTCGAAGATGGTTTG
GCTAAGTGAGAGAGATACAAGTACATGATAATTCTTTTGCAACAATAGAA
TTAGTAATGGCATCTTTGTAACTGATTGTTTCTACTTGAAAAGAAGGTAA
TATTCTTTTAATGAAATGTTTTCCTGTATCCATTTTCCAAGTTTGAAAGG
TAGCATCTTTTCCTGTTTCTCTTTTCATTTACAGCAAGGAAATGAAATGG
AACCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006043	NCS2

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Search form

g.barbadense_cottongen_reftransV1_0094223, g.barbadense_cottongen_reftransV1_0094223 (contig) Gossypium barbadense

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