g.barbadense_cottongen_reftransV1_0094223, g.barbadense_cottongen_reftransV1_0094223 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094223
Unique Name	g.barbadense_cottongen_reftransV1_0094223
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	4205

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt11	chromosome	g.barbadense_cottongen_reftransV1_0094223:4..4205 . Dt11:5644265..5650082 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy Swiss-Prot
Match: S23A3_MOUSE (Solute carrier family 23 member 3 OS=Mus musculus GN=Slc23a3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.237e-9
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 1

Query: 2947 TKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQ 3381
            T  +G Y     L+   PP P   SRG++LEG  S+LAG+ GS  G+ +   N  T+++ +  SRR      LF +   +  ++  +  SIPL +   +L    A+V++ G S+       S RN+ IVG S+F+ L +P + ++
Sbjct:  332 TSSLGCYALCGQLLRLSPPPPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWLRE 476

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A0D2T9J8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058700 PE=4 SV=1)

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 405/417 (97.12%), Postives = 409/417 (98.08%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDXXXXXXXXXXXKTVADGNGLGEKVEERKXXXXXXXXXXXXXXXXXXXXASVTPLXXXXXXXXXXXXXXXXIGMYPXXXXXXXXXXXXXXXXLKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVYTF 1697
            METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDSGSGSGSRQGRKTVADGNGLGEKVEERKVGLNGNGVENGNGNGKGNGVASVTPLVVEEKDEEGKGGRDVEIGMYPEGEEQGHEGGNGHHPGLKVGLRDNPG GALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFG+RLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLR INPVVVAPTVAAVGLAFFSYGFPQAGSCIEVSVPLLLLVLICTLYLRGISIFGHRLFRIYAV  ++T   +Y F
Sbjct:    1 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDSGSGSGSRQGRKTVADGNGLGEKVEERKVGLNGNGVENGNGNGKGNGVASVTPLVVEEKDEEGKGGRDVEIGMYPEGEEQGHEGGNGHHPGLKVGLRDNPGFGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGTRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRWINPVVVAPTVAAVGLAFFSYGFPQAGSCIEVSVPLLLLVLICTLYLRGISIFGHRLFRIYAVPLSVTITWIYAF 417

HSP 2 Score: 506.523 bits (1303), Expect = 1.041e-157
Identity = 274/341 (80.35%), Postives = 280/341 (82.11%), Query Frame = 1

Query: 2455 SLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQVS 3477
            +L+L GI   G H + R   VPLSVTITWIYAFFLTAGGAYDYKGCSP+IPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS                                                  QVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFS+VGKVGAILASIPLSLAAAILCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ+ 
Sbjct:  386 TLYLRGISIFG-HRLFRIYAVPLSVTITWIYAFFLTAGGAYDYKGCSPDIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS--------------------------------------------------QVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSIVGKVGAILASIPLSLAAAILCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQLD 675

HSP 3 Score: 108.997 bits (271), Expect = 1.012e-20
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 3846
            QLDFSINALLSMSMVVTLLVAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF
Sbjct:  673 QLDFSINALLSMSMVVTLLVAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 734

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A0D2S7N0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058700 PE=4 SV=1)

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 405/417 (97.12%), Postives = 409/417 (98.08%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDXXXXXXXXXXXKTVADGNGLGEKVEERKXXXXXXXXXXXXXXXXXXXXASVTPLXXXXXXXXXXXXXXXXIGMYPXXXXXXXXXXXXXXXXLKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVYTF 1697
            METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDSGSGSGSRQGRKTVADGNGLGEKVEERKVGLNGNGVENGNGNGKGNGVASVTPLVVEEKDEEGKGGRDVEIGMYPEGEEQGHEGGNGHHPGLKVGLRDNPG GALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFG+RLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLR INPVVVAPTVAAVGLAFFSYGFPQAGSCIEVSVPLLLLVLICTLYLRGISIFGHRLFRIYAV  ++T   +Y F
Sbjct:    1 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDSGSGSGSRQGRKTVADGNGLGEKVEERKVGLNGNGVENGNGNGKGNGVASVTPLVVEEKDEEGKGGRDVEIGMYPEGEEQGHEGGNGHHPGLKVGLRDNPGFGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGTRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRWINPVVVAPTVAAVGLAFFSYGFPQAGSCIEVSVPLLLLVLICTLYLRGISIFGHRLFRIYAVPLSVTITWIYAF 417

HSP 2 Score: 502.286 bits (1292), Expect = 3.485e-156
Identity = 273/341 (80.06%), Postives = 279/341 (81.82%), Query Frame = 1

Query: 2455 SLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQVS 3477
            +L+L GI   G H + R   VPLSVTITWIYAFFLTAGGAYDYKGCSP+IPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS                                                   VGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFS+VGKVGAILASIPLSLAAAILCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ+ 
Sbjct:  386 TLYLRGISIFG-HRLFRIYAVPLSVTITWIYAFFLTAGGAYDYKGCSPDIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS---------------------------------------------------VGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSIVGKVGAILASIPLSLAAAILCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQLD 674

HSP 3 Score: 108.612 bits (270), Expect = 1.285e-20
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 3846
            QLDFSINALLSMSMVVTLLVAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF
Sbjct:  672 QLDFSINALLSMSMVVTLLVAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 733

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A0B0P656_GOSAR (Nucleobase-ascorbate transporter 11-like protein OS=Gossypium arboreum GN=F383_02598 PE=4 SV=1)

HSP 1 Score: 551.206 bits (1419), Expect = 1.783e-179
Identity = 362/390 (92.82%), Postives = 365/390 (93.59%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDXXXXXXXXXXXKTVADGNGLGEKVEERKXXXXXXXXXXXXXXXXXXXXASVTPLXXXXXXXXXXXXXXXXIGMYPXXXXXXXXXXXXXXXXLKVGLRDNPGLG-----------------ALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIE 1568
            METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPK+DQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKS RDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDSGSGSGSRQGRKTVADGNGLGEKVEERKVGLNGNGVENGNG G G   ASVTPLVVEEKDEEGKGGRDVEIGMYPEGEEQGHEGGNGHHPGLKVGLRDNPG G                 ALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTA+VISTMLLVSGISTILHSYFG+RLPLVQGSSFIYLAPALVIINARDYRNL EHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSCIE
Sbjct:    1 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKRDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSSRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDSGSGSGSRQGRKTVADGNGLGEKVEERKVGLNGNGVENGNGKGNGV--ASVTPLVVEEKDEEGKGGRDVEIGMYPEGEEQGHEGGNGHHPGLKVGLRDNPGFGRNQYTRPVLIRLSLPTGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTATVISTMLLVSGISTILHSYFGTRLPLVQGSSFIYLAPALVIINARDYRNLAEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSCIE 388

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A0B0N5M4_GOSAR (Nucleobase-ascorbate transporter 11 OS=Gossypium arboreum GN=F383_11654 PE=4 SV=1)

HSP 1 Score: 533.102 bits (1372), Expect = 2.245e-173
Identity = 287/342 (83.92%), Postives = 288/342 (84.21%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ 3471
            MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHA+TMKHCR DASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS                                                   VGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTIN TKMASRRALVFGALFLILFSVVGKVGAILASIPLSLAAAILCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIP YFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ
Sbjct:    1 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAFTMKHCRTDASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS---------------------------------------------------VGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINKTKMASRRALVFGALFLILFSVVGKVGAILASIPLSLAAAILCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPAYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ 291

HSP 2 Score: 116.316 bits (290), Expect = 4.507e-24
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 2

Query: 3734 TTQFQAAGTNEGCTFGHVLKMSQLIHPCNWITLCQENFPHFVVVLAVCGHNPQQK 3898
            TTQFQAAG NEGCTFGHVLKMSQLIHPCNWITLCQENFPHFVVVLAVCGHN QQK
Sbjct:  296 TTQFQAAGKNEGCTFGHVLKMSQLIHPCNWITLCQENFPHFVVVLAVCGHNTQQK 350

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A061DHL0_THECC (Xanthine/uracil permease family protein isoform 3 OS=Theobroma cacao GN=TCM_000977 PE=4 SV=1)

HSP 1 Score: 500.36 bits (1287), Expect = 1.692e-157
Identity = 334/427 (78.22%), Postives = 364/427 (85.25%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDXXXXXXXXXXXKTVA----DGNGLGEKVEERKXXXXXXXXXXXXXXXXXXXXAS------VTPLXXXXXXXXXXXXXXXXIGMYPXXXXXXXXXXXXXXXXLKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVYTF 1697
            MET S S+SL+KAE S GRGNKLGSMLPKIEPFVPK+D  HNPRELRSWAKRTGFVSHLSGETGTASST       GFH  + GRDQRAGGSSPKIEIDPVLGRT+PN G+EIE DSGS SGS  G+   A    +GNGLG+KV+ER+ GLNGN    GNGN       +      VTP++ E+K  EGKG RDVE+GMYP GE+QGH G +GHHPG+KVGLRDNPG GALIYYGLQHFLSLAGSLIFIP VMVPAMGGTDKDTA+VISTMLLVSGI+TILHSYFG+RLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAII+GS+FQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFP+AGSC+EVSVPL+LLVLICTLYLRGISIFGHR FRIYAV  ++    +Y F
Sbjct:    1 METRS-SNSLEKAEPSRGRGNKLGSMLPKIEPFVPKRD--HNPRELRSWAKRTGFVSHLSGETGTASST-------GFHAERGGRDQRAGGSSPKIEIDPVLGRTKPNRGIEIEADSGSRSGSGSGQGRRAVPDENGNGLGDKVDEREAGLNGNAKGIGNGNLHVVENGNGNGVPGVTPVISEQKHGEGKGERDVEVGMYPGGEQQGHGGWSGHHPGMKVGLRDNPGFGALIYYGLQHFLSLAGSLIFIPLVMVPAMGGTDKDTATVISTMLLVSGITTILHSYFGTRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIIGSVFQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPRAGSCVEVSVPLILLVLICTLYLRGISIFGHRFFRIYAVPLSVMITWIYAF 417

HSP 2 Score: 322.398 bits (825), Expect = 1.579e-92
Identity = 170/251 (67.73%), Postives = 179/251 (71.31%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKV 3198
            ++ +L+L GI   G H   R   VPLSV ITWIYAFFLT GGAYDYKGCSP+IPSSNILVDEC+KHAYTMKHCR D SNAWR AAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSV  Y                                                   HSASLLVSSKPPTP VVSRGIALEGFCS+LAG+WGSGTGSTTLTENTHTINITKMASRRA+VFGALFLILFS VGKV
Sbjct:  383 LICTLYLRGISIFG-HRFFRIYAVPLSVMITWIYAFFLTTGGAYDYKGCSPDIPSSNILVDECKKHAYTMKHCRTDVSNAWRNAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVGTY---------------------------------------------------HSASLLVSSKPPTPAVVSRGIALEGFCSMLAGLWGSGTGSTTLTENTHTINITKMASRRAVVFGALFLILFSFVGKV 581

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A061DHG4_THECC (Transducin/WD40 repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_000977 PE=4 SV=1)

HSP 1 Score: 501.13 bits (1289), Expect = 8.688e-157
Identity = 334/427 (78.22%), Postives = 364/427 (85.25%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDXXXXXXXXXXXKTVA----DGNGLGEKVEERKXXXXXXXXXXXXXXXXXXXXAS------VTPLXXXXXXXXXXXXXXXXIGMYPXXXXXXXXXXXXXXXXLKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVYTF 1697
            MET S S+SL+KAE S GRGNKLGSMLPKIEPFVPK+D  HNPRELRSWAKRTGFVSHLSGETGTASST       GFH  + GRDQRAGGSSPKIEIDPVLGRT+PN G+EIE DSGS SGS  G+   A    +GNGLG+KV+ER+ GLNGN    GNGN       +      VTP++ E+K  EGKG RDVE+GMYP GE+QGH G +GHHPG+KVGLRDNPG GALIYYGLQHFLSLAGSLIFIP VMVPAMGGTDKDTA+VISTMLLVSGI+TILHSYFG+RLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAII+GS+FQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFP+AGSC+EVSVPL+LLVLICTLYLRGISIFGHR FRIYAV  ++    +Y F
Sbjct:    1 METRS-SNSLEKAEPSRGRGNKLGSMLPKIEPFVPKRD--HNPRELRSWAKRTGFVSHLSGETGTASST-------GFHAERGGRDQRAGGSSPKIEIDPVLGRTKPNRGIEIEADSGSRSGSGSGQGRRAVPDENGNGLGDKVDEREAGLNGNAKGIGNGNLHVVENGNGNGVPGVTPVISEQKHGEGKGERDVEVGMYPGGEQQGHGGWSGHHPGMKVGLRDNPGFGALIYYGLQHFLSLAGSLIFIPLVMVPAMGGTDKDTATVISTMLLVSGITTILHSYFGTRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIIGSVFQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPRAGSCVEVSVPLILLVLICTLYLRGISIFGHRFFRIYAVPLSVMITWIYAF 417

HSP 2 Score: 317.005 bits (811), Expect = 6.493e-90
Identity = 167/248 (67.34%), Postives = 176/248 (70.97%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVV 3189
            ++ +L+L GI   G H   R   VPLSV ITWIYAFFLT GGAYDYKGCSP+IPSSNILVDEC+KHAYTMKHCR D SNAWR AAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSV  Y                                                   HSASLLVSSKPPTP VVSRGIALEGFCS+LAG+WGSGTGSTTLTENTHTINITKMASRRA+VFGALFLILFS V
Sbjct:  383 LICTLYLRGISIFG-HRFFRIYAVPLSVMITWIYAFFLTTGGAYDYKGCSPDIPSSNILVDECKKHAYTMKHCRTDVSNAWRNAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVGTY---------------------------------------------------HSASLLVSSKPPTPAVVSRGIALEGFCSMLAGLWGSGTGSTTLTENTHTINITKMASRRAVVFGALFLILFSFV 578

HSP 3 Score: 87.4261 bits (215), Expect = 4.492e-14
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 3846
            QLDF+INAL+SMSMVVTLLVAFVLDNTVPGS+ ERGVYIWS AEDV+ DPS Q DYSLPGKF
Sbjct:  591 QLDFTINALMSMSMVVTLLVAFVLDNTVPGSQQERGVYIWSRAEDVSMDPSSQADYSLPGKF 652

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A061DPP1_THECC (Xanthine/uracil permease family protein isoform 1 OS=Theobroma cacao GN=TCM_000977 PE=4 SV=1)

HSP 1 Score: 501.516 bits (1290), Expect = 5.872e-156
Identity = 334/427 (78.22%), Postives = 364/427 (85.25%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRGNKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMDXXXXXXXXXXXKTVA----DGNGLGEKVEERKXXXXXXXXXXXXXXXXXXXXAS------VTPLXXXXXXXXXXXXXXXXIGMYPXXXXXXXXXXXXXXXXLKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV-RTLTYHLVYTF 1697
            MET S S+SL+KAE S GRGNKLGSMLPKIEPFVPK+D  HNPRELRSWAKRTGFVSHLSGETGTASST       GFH  + GRDQRAGGSSPKIEIDPVLGRT+PN G+EIE DSGS SGS  G+   A    +GNGLG+KV+ER+ GLNGN    GNGN       +      VTP++ E+K  EGKG RDVE+GMYP GE+QGH G +GHHPG+KVGLRDNPG GALIYYGLQHFLSLAGSLIFIP VMVPAMGGTDKDTA+VISTMLLVSGI+TILHSYFG+RLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAII+GS+FQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFP+AGSC+EVSVPL+LLVLICTLYLRGISIFGHR FRIYAV  ++    +Y F
Sbjct:    1 METRS-SNSLEKAEPSRGRGNKLGSMLPKIEPFVPKRD--HNPRELRSWAKRTGFVSHLSGETGTASST-------GFHAERGGRDQRAGGSSPKIEIDPVLGRTKPNRGIEIEADSGSRSGSGSGQGRRAVPDENGNGLGDKVDEREAGLNGNAKGIGNGNLHVVENGNGNGVPGVTPVISEQKHGEGKGERDVEVGMYPGGEQQGHGGWSGHHPGMKVGLRDNPGFGALIYYGLQHFLSLAGSLIFIPLVMVPAMGGTDKDTATVISTMLLVSGITTILHSYFGTRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIIGSVFQSILGFSGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPRAGSCVEVSVPLILLVLICTLYLRGISIFGHRFFRIYAVPLSVMITWIYAF 417

HSP 2 Score: 464.537 bits (1194), Expect = 3.706e-142
Identity = 253/344 (73.55%), Postives = 267/344 (77.62%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQVS 3477
            ++ +L+L GI   G H   R   VPLSV ITWIYAFFLT GGAYDYKGCSP+IPSSNILVDEC+KHAYTMKHCR D SNAWR AAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS                                                   VGTYHSASLLVSSKPPTP VVSRGIALEGFCS+LAG+WGSGTGSTTLTENTHTINITKMASRRA+VFGALFLILFS V KVGAILASIPLSLAA+ILCFMWALVVA+GLSTLQYTQT SFRNITIVGVSLFLGLSIP YFQQYQPES L+LPSYFVPYAAASDGPV T N+Q+ 
Sbjct:  383 LICTLYLRGISIFG-HRFFRIYAVPLSVMITWIYAFFLTTGGAYDYKGCSPDIPSSNILVDECKKHAYTMKHCRTDVSNAWRNAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS---------------------------------------------------VGTYHSASLLVSSKPPTPAVVSRGIALEGFCSMLAGLWGSGTGSTTLTENTHTINITKMASRRAVVFGALFLILFSFVAKVGAILASIPLSLAASILCFMWALVVALGLSTLQYTQTTSFRNITIVGVSLFLGLSIPAYFQQYQPESSLILPSYFVPYAAASDGPVRTGNKQLD 674

HSP 3 Score: 89.7373 bits (221), Expect = 8.550e-15
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGKF 3846
            QLDF+INAL+SMSMVVTLLVAFVLDNTVPGS+ ERGVYIWS AEDV+ DPS Q DYSLPGKF
Sbjct:  672 QLDFTINALMSMSMVVTLLVAFVLDNTVPGSQQERGVYIWSRAEDVSMDPSSQADYSLPGKF 733

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A067K0Y3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18707 PE=4 SV=1)

HSP 1 Score: 437.187 bits (1123), Expect = 9.655e-132
Identity = 235/342 (68.71%), Postives = 262/342 (76.61%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ 3471
            +V SL+L G+   G H + R   VPLSV I W YAFFLTAGGAY+YKGCSP+IPSSNILVD CR+HAYTM+HCR D SNA RT+AWVRIPYPLQWG+PIFH RTSLIMIIVSLVASVDS                                                   VGTYHS S LV+SKPPTPG+VSRGIALEGFCSLLAG+WGSGTGSTTLTEN HTINITK+ASRRA+V GA+FLILFS VGKVGAILASIPL+LAA++LCFMW L+VA+GLSTLQY+QTASFRNI IVGVSLFLGLSIP YFQQYQPES L+LPSYFVP+AAAS+GPVHT ++Q
Sbjct:  403 LVFSLYLRGLSIFG-HRLFRVYAVPLSVMIIWTYAFFLTAGGAYNYKGCSPDIPSSNILVDACRRHAYTMQHCRTDVSNALRTSAWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDS---------------------------------------------------VGTYHSTSFLVNSKPPTPGIVSRGIALEGFCSLLAGLWGSGTGSTTLTENVHTINITKVASRRAVVLGAVFLILFSFVGKVGAILASIPLALAASVLCFMWGLIVALGLSTLQYSQTASFRNIAIVGVSLFLGLSIPAYFQQYQPESSLILPSYFVPFAAASNGPVHTSSKQ 692

HSP 2 Score: 308.145 bits (788), Expect = 7.482e-86
Identity = 171/209 (81.82%), Postives = 198/209 (94.74%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAVRTLTYHLVYTF 1697
            +K GLRDNPG   L+YYGLQH+LSLAGSLIFIP ++VPAMGGTDKDTA+VISTMLL+SGI+TILHSYFG+RLPLVQGSSFIYLAPALVI+NAR+YRNL+E+KFRHIMRELQGAIIVGSIFQ ILGF+GLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSC+E+S+PL+LLVL+ +LYLRG+SIFGHRLFR+YAV  L+  +++T+
Sbjct:  228 MKFGLRDNPGFVPLMYYGLQHYLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLISGITTILHSYFGTRLPLVQGSSFIYLAPALVIMNAREYRNLSENKFRHIMRELQGAIIVGSIFQVILGFTGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSCVEISIPLILLVLVFSLYLRGLSIFGHRLFRVYAV-PLSVMIIWTY 435

HSP 3 Score: 124.405 bits (311), Expect = 1.505e-25
Identity = 74/119 (62.18%), Postives = 85/119 (71.43%), Query Frame = 3

Query:  450 METGSNSDSLDKAETSNGRG---NKLGSMLPKIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFHVGKSGRDQRAGGSSPKIEIDPVLGRTRPNMGVEIEMD 797
            METGS+S+ +DK+ T   R      LGSMLPKIEPFV + D  HNPRELRSWAKRTGF+S  S ET T S++ +FDSSTGF + K     + GGSSPKIEIDPVLGRTR   G EIE D
Sbjct:    1 METGSSSNPVDKSGTQRERAKTNTNLGSMLPKIEPFVARTD--HNPRELRSWAKRTGFISTFSSET-TTSNSGKFDSSTGFDLEKGVHHHKNGGSSPKIEIDPVLGRTRTARGSEIEAD 116

HSP 4 Score: 82.4185 bits (202), Expect = 1.549e-12
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            Q DF+INAL+S++MVVT L+AFVLDNTVPG+R ERGVYIWS  ED+ TDPSL  DYSLP K
Sbjct:  692 QFDFAINALMSLNMVVTFLIAFVLDNTVPGTRQERGVYIWSHPEDLVTDPSLHADYSLPQK 752

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: A0A067EZH2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013981mg PE=4 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 5.005e-131
Identity = 228/359 (63.51%), Postives = 264/359 (73.54%), Query Frame = 1

Query: 2401 LPQFILLNNFGLSRKMVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQVS 3477
            +PQ +L+        ++ +L+L GI   G H + R   VPLSV I W YAFFLTAGGAY+YKGCSP+IPSSNIL D C KHAYTMKHCR D SNAWRTAAWVRIPYPLQWG+PIFH RTSLIMIIVSLVASVDS                                                   VGTYH+ASLLV+SKPPTP +VSRGI +EGFCS+LAG+WGSGTGS+TLTEN HTI+ITK+ASRRA+  GA+F+I+FS VGKVGAILASIP +LAA+ILCFMWAL+VA+GLS LQYTQ+ASFRNI IVG SLFLGLSIP YFQQY PE+ L+LPSYFVP+AAAS+GPVHT ++Q+ 
Sbjct:   63 IPQILLV--------LIFALYLRGISVFGHH-LFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDS---------------------------------------------------VGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIMIVGASLFLGLSIPAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLD 361

HSP 2 Score: 124.79 bits (312), Expect = 1.730e-26
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 3

Query: 1389 MRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAV 1664
            MRELQGAIIVGSIFQSILGF+GLMSL LRLINPVVVAPTVAA+GLAFFSYGFPQAGSC+E+S+P +LLVLI  LYLRGIS+FGH LFRIYAV
Sbjct:    1 MRELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCVEISIPQILLVLIFALYLRGISVFGHHLFRIYAV 92

HSP 3 Score: 90.8929 bits (224), Expect = 1.092e-15
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            QLDF+INAL+SM+MVVTLLVAF+LDNTVPGSR ERGVYIWS AED+A+DPSLQ DYSLP K
Sbjct:  359 QLDFAINALMSMNMVVTLLVAFILDNTVPGSRQERGVYIWSRAEDLASDPSLQADYSLPRK 419

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Match: B9HFM4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14230g PE=4 SV=2)

HSP 1 Score: 433.335 bits (1113), Expect = 1.438e-130
Identity = 232/342 (67.84%), Postives = 260/342 (76.02%), Query Frame = 1

Query: 2446 MVDSLFLVGIFFVGRHVIVRSLQVPLSVTITWIYAFFLTAGGAYDYKGCSPEIPSSNILVDECRKHAYTMKHCRADASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDSVSIYCVPKYRIKWTV*WKYFI*HLISVNLRH*TRNKDNGPYIDACDTITKQVGTYHSASLLVSSKPPTPGVVSRGIALEGFCSLLAGIWGSGTGSTTLTENTHTINITKMASRRALVFGALFLILFSVVGKVGXXXXXXXXXXXXXXXCFMWALVVAVGLSTLQYTQTASFRNITIVGVSLFLGLSIPTYFQQYQPESILMLPSYFVPYAAASDGPVHTINEQ 3471
            ++ +L+L GI   G H I +   VPLSV + W YAFFLTAGGAY+YKGCSP++PSSNILVD CRKHAYTM+HCR DASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS                                                   VGTYHS SLLV+SKPPTP +VSRGIALEGFCS+LAGIWG GTGSTTLTEN HT+NITK+ASRR +  GA FLILFS +GKVGAILASIP +LAA+ILCFMW L+V++GLSTLQY+QTASFRNITIVGVSLFLGL+IP YFQQYQPES L+LPSYFVPYAAAS+GPV T ++Q
Sbjct:  375 LIFTLYLRGISIFG-HRIFQIYAVPLSVLMIWTYAFFLTAGGAYNYKGCSPDVPSSNILVDACRKHAYTMQHCRTDASNAWRTAAWVRIPYPLQWGVPIFHFRTSLIMIIVSLVASVDS---------------------------------------------------VGTYHSTSLLVNSKPPTPRIVSRGIALEGFCSVLAGIWGCGTGSTTLTENVHTVNITKVASRRVVEVGAAFLILFSFIGKVGAILASIPQALAASILCFMWGLIVSLGLSTLQYSQTASFRNITIVGVSLFLGLTIPAYFQQYQPESSLILPSYFVPYAAASNGPVQTSSKQ 664

HSP 2 Score: 308.531 bits (789), Expect = 2.800e-86
Identity = 170/209 (81.34%), Postives = 197/209 (94.26%), Query Frame = 3

Query: 1071 LKVGLRDNPGLGALIYYGLQHFLSLAGSLIFIPSVMVPAMGGTDKDTASVISTMLLVSGISTILHSYFGSRLPLVQGSSFIYLAPALVIINARDYRNLTEHKFRHIMRELQGAIIVGSIFQSILGFSGLMSLLLRLINXXXXXXXXXXXGLAFFSYGFPQAGSCIEVSVPXXXXXXXXXXXXRGISIFGHRLFRIYAVRTLTYHLVYTF 1697
            ++ GLRDNPG   L+YYGLQH+LS+AGSLIFIP ++VPAMGGTD+DTA VISTMLL+SGI+TILHSYFG+RLPLVQGSSF+YLAPALVIINAR+YRNLTEHKFRHIMRELQGAIIVGS+FQ+ILGF+G MSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSC+E+S+PL+LLVLI TLYLRGISIFGHR+F+IYAV  L+  +++T+
Sbjct:  200 MRYGLRDNPGFALLMYYGLQHYLSMAGSLIFIPLIIVPAMGGTDRDTAEVISTMLLISGITTILHSYFGTRLPLVQGSSFVYLAPALVIINAREYRNLTEHKFRHIMRELQGAIIVGSLFQTILGFTGFMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSCVEISIPLILLVLIFTLYLRGISIFGHRIFQIYAV-PLSVLMIWTY 407

HSP 3 Score: 82.8037 bits (203), Expect = 1.319e-12
Identity = 55/119 (46.22%), Postives = 70/119 (58.82%), Query Frame = 3

Query:  534 KIEPFVPKKDQNHNPRELRSWAKRTGFVSHLSGETGTASSTERFDSSTGFH--VGKSGRDQRAGGSSPKIEIDPVLGRTRP-NMGVEIEMDXXXXXXXXXXXKTVADGNGLGEKVEERK 881
            KI+PFVP+ D  HNPRELRSWAKRTGFVS  S ET T++ T     ++  +     +    R GGSSPKIEIDP+LGRTR  N  +EIE +           +   D  GLG + E ++
Sbjct:   33 KIDPFVPRTD--HNPRELRSWAKRTGFVSTFSSETTTSNDTATPTPASELYNKAVDNNNHHRNGGSSPKIEIDPILGRTRQLNSRIEIEPE----------SRPGNDDRGLGLRDESKR 139

HSP 4 Score: 82.0333 bits (201), Expect = 2.339e-12
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1

Query: 3661 QLDFSINAXXXXXXXXXXXXAFVLDNTVPGSRDERGVYIWSCAEDVATDPSLQLDYSLPGK 3843
            Q DF++NAL+S++MVVTLLVAFVLDNTVPG+R ERGVYIWS AED+ATD SL  DYSLP K
Sbjct:  664 QFDFAMNALMSLNMVVTLLVAFVLDNTVPGNRQERGVYIWSRAEDMATDTSLHADYSLPSK 724

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 21


Match Name	E-value	Identity	Description
S23A3_MOUSE	4.237e-9	31.72	Solute carrier family 23 member 3 OS=Mus musculus ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0094223 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2T9J8_GOSRA	1.041e-157	97.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S7N0_GOSRA	3.485e-156	97.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P656_GOSAR	1.783e-179	92.82	Nucleobase-ascorbate transporter 11-like protein O...	[more]
A0A0B0N5M4_GOSAR	2.245e-173	83.92	Nucleobase-ascorbate transporter 11 OS=Gossypium a...	[more]
A0A061DHL0_THECC	1.692e-157	78.22	Xanthine/uracil permease family protein isoform 3 ...	[more]
A0A061DHG4_THECC	8.688e-157	78.22	Transducin/WD40 repeat-like superfamily protein is...	[more]
A0A061DPP1_THECC	5.872e-156	78.22	Xanthine/uracil permease family protein isoform 1 ...	[more]
A0A067K0Y3_JATCU	9.655e-132	68.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067EZH2_CITSI	5.005e-131	63.51	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
B9HFM4_POPTR	1.438e-130	67.84	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006043	Xanthine/uracil/vitamin C permease	PFAM	PF00860	Xan_ur_permease	coord: 220..405 e-value: 6.5E-24 score: 84.2
IPR006043	Xanthine/uracil/vitamin C permease	PANTHER	PTHR11119	XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER	coord: 159..405
None	No IPR available	PANTHER	PTHR11119:SF54	NUCLEOBASE-ASCORBATE TRANSPORTER 11	coord: 159..405
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..220
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 276..280
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 320..341
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 300..319
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 367..377
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 378..400
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 281..299
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 244..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 347..366
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 255..275
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 401..416
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 342..346
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 221..243
None	No IPR available	TMHMM	TMhelix		coord: 281..298
None	No IPR available	TMHMM	TMhelix		coord: 346..365
None	No IPR available	TMHMM	TMhelix		coord: 220..242
None	No IPR available	TMHMM	TMhelix		coord: 319..341
None	No IPR available	TMHMM	TMhelix		coord: 372..394
None	No IPR available	TMHMM	TMhelix		coord: 254..276

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094223 ID=g.barbadense_cottongen_reftransV1_0094223; Name=g.barbadense_cottongen_reftransV1_0094223; organism=Gossypium barbadense; type=contig; length=4205bp
AGGAAAAATCCATTTATGCCGGATATTTGTTGAAAAAGAAATAAAAGGAC
AAGGAAAGGACTGGATTCAATTTTGCCGTTACAGTGGCAACTGGGTAATT
TGCAATAATAAACTTCAACTGATAGCAACTGGCCAGCGGCAATGAAGAAG
AAAGCAGAACCAAAAAAAGTGAACAAGATAAAATAAACAAATTCCCTCAC
TTTTCACACTCACAGTTCCTACTTTCCAATTTCCTTAATAATACAAACAA
AAACATACCAAACTATTTTCCTCTGAATTTCTCCTCTTTCCCTGCACCGA
TCTGCCTTTACTTAGTTTCTACATTTCCTTCTCTCTTTTATTTTTTTCTC
GGTTTTTCTTGGTAGTTCACTGAGGTCCTTTTAATAGTCATTCGTTTTTT
TTGTGTGTGTGTGGGGAAAGAATTGGTACGCATTTGAGAAGAAGCTGAAA
TGGAAACTGGGTCGAACTCAGATTCACTAGACAAGGCAGAGACTTCAAAT
GGAAGAGGCAACAAGCTTGGTTCAATGTTACCAAAGATTGAACCTTTTGT
GCCTAAAAAAGATCAAAACCATAACCCAAGAGAGTTAAGATCTTGGGCTA
AAAGAACCGGTTTCGTCTCTCACTTATCTGGAGAAACCGGCACTGCTAGT
TCTACTGAAAGATTCGACAGTTCCACTGGGTTTCATGTGGGAAAAAGTGG
CCGTGATCAAAGAGCAGGCGGGTCATCTCCGAAAATAGAGATTGATCCGG
TTTTGGGCCGGACTAGACCCAATATGGGTGTTGAAATTGAAATGGATTCA
GGTTCTGGGTCCGGATCCAGACAAGGAAGGAAGACAGTTGCAGATGGGAA
TGGTTTGGGAGAGAAAGTTGAGGAAAGGAAAGTTGGGTTAAACGGGAATG
GGGTGGAAAATGGGAATGGGAATGGGAAAGGAAATGGAGTTGCAAGTGTT
ACACCACTAGTTGTTGAAGAGAAGGATGAGGAAGGAAAGGGTGGAAGGGA
TGTGGAAATTGGGATGTATCCAGAAGGTGAAGAGCAGGGTCATGAAGGGG
GGAATGGTCATCATCCCGGGTTGAAGGTTGGGTTGAGAGATAATCCGGGT
TTGGGAGCACTAATATATTATGGCCTGCAGCACTTTTTATCATTGGCGGG
TTCGCTTATATTCATTCCATCAGTTATGGTACCAGCCATGGGCGGAACAG
ATAAAGATACTGCCAGTGTGATTTCTACAATGCTGCTAGTTTCTGGCATT
AGTACAATTCTGCACTCCTACTTTGGTTCCCGGCTTCCATTAGTTCAAGG
AAGTTCATTCATCTATCTGGCACCAGCGCTAGTTATCATCAATGCTCGGG
ATTATAGAAATCTCACAGAACATAAATTCAGGCACATAATGAGAGAGCTG
CAAGGAGCTATTATTGTTGGTTCAATATTCCAAAGTATCTTAGGATTCAG
TGGATTGATGTCTCTTTTACTGAGATTGATTAACCCAGTTGTGGTTGCAC
CAACTGTTGCCGCTGTGGGTTTAGCATTCTTTAGTTATGGCTTTCCACAA
GCTGGTAGTTGTATAGAAGTCAGTGTTCCCTTGTTGTTGTTGGTTCTTAT
ATGTACCCTGTATCTTCGAGGAATATCCATTTTTGGGCACCGATTGTTTC
GAATATATGCAGTACGTACTCTCACCTATCATCTTGTTTATACTTTTTAA
ACCTTGACCTCAATTTTGTTTTTAATATCTAGTGTTACTCACGAGCTACC
CTTTCTTGAGTTCCTTCTTTGGGGTAATGAGCTATCAGCTAAAAGCTAAC
CGGCTATCTGCCGTAAAAGTTTCTCACTTCATTATGATGAAAGCCTAATA
GTGGTGGATGACAAGATAATTTGTTGCTTCTTGTCATGTTTGTTTTGTTA
CCATTGTTTACCAATTGTTTATCACCCCATGTTATCAGTGAAGGTGTTTT
TATCTAGTTTTTTTGTGGTGTGGTTAAAGGACCCCTCTGTCCTGAAAATG
CCCCAAGCTCTATTTAATTCAGTTTCCTTAAAAATTGAACTTATTTTACT
GTCAAGCAATACATTCTTTGTACCATTGCATCGTCTAATTGAGTCGGAAA
TGGGATGTAATATGGATTTGTCATATAGATCTAACTGAGTCGGAATGTCC
TTCATAAGAATGATTAAGGTCACATTGCTCTCAAAAGTTTAAAAAAAGAA
GATGAAAACTACCATGTGAATGATCTTTCTTCTTTCTTTCACTACTCCTA
TTCAAGGATTAATTTGTGTCTGTTCCATCAGCCATTACGGAAGCTGAATT
TTTTTACCCATGAAAAGCTGTTTAGCAGTGCTTCCCAAGGAAAGGTCTTT
CTTACCCTACCATAGTTGAAGTAGAATCACAATATTAAGTGTTTAAAAAG
TTACCGCAGTTCATTTTGTTGAACAACTTTGGTTTGTCCAGGAAAATGGT
AGATTCTTTGTTTTTGGTAGGGATATTCTTTGTTGGACGTCATGTCATTG
TTCGATCACTGCAGGTTCCTCTTAGTGTTACAATCACTTGGATATATGCA
TTCTTTCTGACAGCCGGAGGAGCTTATGATTATAAAGGATGCAGTCCCGA
GATTCCCAGTTCAAACATTTTAGTTGATGAGTGTAGAAAACATGCATATA
CCATGAAGCATTGCAGAGCTGATGCTTCAAACGCATGGAGAACTGCTGCA
TGGGTCAGAATTCCGTACCCTTTACAGTGGGGTGTCCCTATCTTCCATTT
CCGGACGTCTTTGATTATGATCATTGTGTCACTTGTTGCATCGGTAGATT
CGGTTAGTATTTATTGTGTGCCAAAATATCGTATCAAATGGACTGTGTGA
TGGAAATACTTTATTTAACATTTAATATCTGTAAATTTAAGACACTGAAC
AAGAAATAAGGATAATGGCCCTTACATTGATGCTTGTGATACAATTACTA
AGCAGGTCGGAACATATCACTCTGCCTCTTTGCTAGTCAGTTCGAAGCCT
CCAACTCCTGGAGTAGTTAGCAGAGGCATTGCTTTGGAAGGTTTCTGTAG
CCTGCTTGCTGGAATTTGGGGTTCGGGTACTGGCTCAACAACTTTGACAG
AGAATACACATACGATAAACATAACAAAGATGGCAAGCCGAAGAGCTTTG
GTATTTGGGGCACTTTTCTTGATCCTCTTCTCAGTTGTCGGAAAAGTGGG
TGCAATTCTTGCTTCAATACCACTGTCCTTGGCTGCTGCAATTTTGTGCT
TCATGTGGGCCCTTGTTGTGGCTGTAGGCCTCTCAACCTTGCAATACACG
CAAACAGCAAGTTTTAGGAACATAACCATAGTTGGGGTGTCCTTGTTTCT
TGGTTTATCCATTCCTACTTATTTCCAACAGTACCAACCCGAGTCAATTT
TGATGCTGCCAAGTTATTTTGTTCCGTATGCAGCTGCATCAGATGGACCA
GTCCACACCATTAATGAACAAGTAAGTTGAAGTTGTGCATATTTTTGAAT
CTTGATATAGATTGCCGCCATTCTAGTTGCTAAGCTGATGATACATAGAT
ATGCAGACACTTATCCCAGGTTTCTTTGATTTTATGATTTATGATGTCTT
TCTTGATTTCCTTAATTGTATGAAAAAAAAAGTTTTAACAAGTTTGTTTT
ATGAACATGTCAGCTTGATTTTTCTATAAATGCACTCTTGTCTATGAGCA
TGGTGGTTACACTCTTGGTAGCATTTGTACTCGACAACACAGTTCCAGGC
AGCCGGGACGAACGAGGGGTGTACATTTGGTCATGTGCTGAAGATGTCGC
AACTGATCCATCCTTGCAATTGGATTACTCTCTGCCAGGAAAATTTTCCT
CACTTTGTTGTCGTTCTAGCTGTTTGCGGGCATAATCCTCAGCAGAAGGT
AGCTTGTTCTTCAACTTGAAGTTTCTTTCCGAAAAGGTAAGTTTTGTTAC
GGAAGGGCACTTCCTCAATAGTACGCATAACCAAGCTCGAAGATGGTTTG
GCTAAGTGAGAGAGATACAAGTACATGATAATTCTTTTGCAACAATAGAA
TTAGTAATGGCATCTTTGTAACTGATTGTTTCTACTTGAAAAGAAGGTAA
TATTCTTTTAATGAAATGTTTTCCTGTATCCATTTTCCAAGTTTGAAAGG
TAGCATCTTTTCCTGTTTCTCTTTTCATTTACAGCAAGGAAATGAAATGG
AACCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006043	NCS2

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Search form

g.barbadense_cottongen_reftransV1_0094223, g.barbadense_cottongen_reftransV1_0094223 (contig) Gossypium barbadense

Pages

Pages