g.barbadense_cottongen_reftransV1_0094222, g.barbadense_cottongen_reftransV1_0094222 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1) HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0 Identity = 268/414 (64.73%), Postives = 335/414 (80.92%), Query Frame = -3 Query: 563 MEGETSWNSHCADDMSKDIGEFDSFSELSDEGNKETIISVDSILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSH-VLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSH-------NYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXP----VPGPLTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRNWVEVGRMPHKFFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCFEPRLEIAP 1768 ME ETSW ++ ++ + E +S+ E SD+ K S+DS+LPDDLLERIL++LPIASIFRAG+VC+RW+EIVSS+RFL NFS+ +SQ+PWYFMFT++D+P GYAYDPI+RKWY+ +LPCI+T NWF+ASSCGLVCFMDND R++++V NPITK + L EPPG K +DY+A+S SV+R + +Y++SIVKSKQVPGNF QWDLSIH+Y SETM W T + +VL+GWRGG+ESVIC+ VLYF+IYSTG ++RH L+A NLSS SP L+ +P LTCGRLMNL+ +LV+VGGIGK DRP++IKGIGIWVL G+ WVE+ +MP +FFQGFGE D+VFASSGTD+L+YIQSYG+PALL FDMN K W+WS KCPV+KKFPLQLFTGFCFEPRLEIAP Sbjct: 1 MEAETSWTNYPYSYITY-VPEAESYREQSDDEAKVETFSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCFMDNDCRNKIYVSNPITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTWTTLVNDVLSGWRGGNESVICNNVLYFMIYSTG--GSDHRHGLIASNLSSIGSPSSGILMRSFIPMPCSLTCGRLMNLRERLVIVGGIGKHDRPEVIKGIGIWVLKGKEWVEMAKMPQRFFQGFGEFDEVFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQLFTGFCFEPRLEIAP 411
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.282e-23 Identity = 103/370 (27.84%), Postives = 162/370 (43.78%), Query Frame = -3 Query: 566 SILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMF--TSSDEPVGYAYDPILRKWYTIELPCIQT-PNWFIASSCGLVCFMDNDSRS-ELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWR-GGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGPLTCGRLM-NLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGR--NWVEVGRMPHKFFQGFGELD-DVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCF-EPRLEIA 1645 ++LP+DLL ILA +P IFR SVC++W+ I+ FL S+V S P F S P + L+ WY I + W + SS GLVCF D + VCNP+ + + L P M ++ L + V R+ ++ ++ + + G+ L +YDS+T W SL +++ + CD LY E L S P L G L+ + +L +VG IG ++ + IW L+ +WVE+ RMP K+F+ L + F G DNLI S+ L++++++K+W W C + + CF EPR + + Sbjct: 105 AMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTL---PSMHYNQQRQLIMVVDRSDKSF--KVIATSDIYGDK---SLPTEVYDSKTDKW--SLHQIMPAVNLCSSKMAYCDSRLYL----------ETLSPLGLMMYRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIG---LYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRLSAERFECFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGCALQ-----SCNSQVCFYEPRFDAS 446
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.427e-19 Identity = 92/367 (25.07%), Postives = 165/367 (44.96%), Query Frame = -3 Query: 581 LPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFI--ASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYS----ALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGP--LTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRN--WVEVGRMPHKF---FQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSK-KFPLQLFTGFCFEP 1639 P DL E +++ LP+A+ F+ +VCR+W+ ++ S F F+ + PW++ T + G YDP L+KW+ +P + + + AS+ GLVCF+D R+ +V NP+T K +E P F +S ++L+ + TSH Y + V + G + +D +++ + + VL ++ + V LYF++ PE +++Y+ +PGP L+ L +L++VG + K + + IW L W EV RMP+ + F G + + G L+ ++S L+ ++ + W C V + + L + G F P Sbjct: 120 FPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRN-FYVSNPLT---KSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCE---GEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFK--SQPVAIHSTLYFMLTD-----PE---GILSYD----MVSGKWKQFIIPGPPDLSDHTLAACGERLMLVGLLTK----NAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVPGCTVPRGRKRLWIACGTAFHP 461
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: UFO_ARATH (Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.023e-17 Identity = 94/375 (25.07%), Postives = 159/375 (42.40%), Query Frame = -3 Query: 632 SILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMF------------------TSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDS-RSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETM---------MWA-TSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGP----LTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRN--WVEVGRMPHKFFQGFG--ELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCP 1645 S LP LL+R++A+LP + FR VC+R++ ++ S FL + +L + F+F S++ G+ +DP +WY + I + + SS GLV ++ ++ + +CNP+ +L PP + + ++ LSV+ TS + T++ G+ L ++ SE+ +WA TS L G + V G Y + YS S+++Y I + P L L+ KG+L++V + K + ++ K + +W L N WVE+ RMP + F E F G + I G L+FD+ +K W W CP Sbjct: 48 SKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQL--PPISRPRLFPSIGLSVTPTSIDVTVA--------GDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLESG-KMVYVQGKFYCMNYSP--------FSVLSYE------VTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEK-SKLNVPKSLRLWSLQQDNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVPPCP 396
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FBX13_ARATH (F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.780e-11 Identity = 57/221 (25.79%), Postives = 98/221 (44.34%), Query Frame = -3 Query: 1004 LPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIE----LPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICD-----GVLYFLIYSTGVGTPEN 1639 L DD+LER+L++LP + FR SVC+RW +SK F S + ++ PW+FM + + +D W + L + +ASS GL+C+ + S + + NP+T + + A++++ + + + + S ++P +LS IY+S W S + L + D S+ D G +YFL V N Sbjct: 70 LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSIS-GDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGEIP------NLSFKIYESNADSW--SKDQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVVASN 281
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FB341_ARATH (F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 3.509e-9 Identity = 54/213 (25.35%), Postives = 98/213 (46.01%), Query Frame = -3 Query: 1034 SILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKL---QEPPGMKF---SDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMW---ATSLTEVLTGWRGGDESVICDGVLYFLI 1645 ++ PD+++ +ILA LP+ S+FR SVC+ W+ + S K F F+ LS K + SD D LR + L ++ SS GL+C + +VCNP T+ +KL +E P +F + + + L+ + + + + + + G ++DSE+ W + L E ++ V +G+L++L+ Sbjct: 7 ALFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQ-LSVKEQLLVAEVSDSSSLICVDN-LRGVSELSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLVFDSESNKWRKFVSVLEECSFTHMSKNQVVFVNGMLHWLM 217
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FB204_ARATH (F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 2.062e-7 Identity = 52/211 (24.64%), Postives = 89/211 (42.18%), Query Frame = -3 Query: 1037 LPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELP-------CIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWD-LSIHIYDSETMMWATSL--TEVLTGWRGGDESVICDGVLYFL 1639 LP DLL+ +++ LP+ RA +VC+ WHE S R V+ PW F+ +D+ YDP ++K + P C W + M N + +L NP T+ C + P + + ++ S + TS + + V S + W+ ++I Y + W TS+ + + ++ V +GV Y L Sbjct: 32 LPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLR-------VIHTSPWLIYFSKTDDSYE-LYDPSMQKNCNLHFPELSGFRVCYSKDGWLL---------MYNPNSYQLLFFNPFTRDCVPM---PTLWMAYDQRMAFSCAPTSTSCLLFTVTS-------VTWNYITIKTYFANAKEWKTSVFKNRLQRNFNTFEQIVFSNGVFYCL 215
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FK117_ARATH (F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 3.308e-7 Identity = 28/85 (32.94%), Postives = 44/85 (51.76%), Query Frame = -3 Query: 1397 LPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVG----YAYDPILRKWYTIELPCIQ 1639 LPDD+LE L LP+ S+ A VC++W + +++RFL Q PW F+F + + + YD KW+ IE ++ Sbjct: 135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDGCSSGDIHGYDVSQDKWHRIETDLLK 219
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Match: FK118_ARATH (F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 3.424e-7 Identity = 28/85 (32.94%), Postives = 44/85 (51.76%), Query Frame = -3 Query: 1397 LPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVG----YAYDPILRKWYTIELPCIQ 1639 LPDD+LE L LP+ S+ A VC++W + +++RFL Q PW F+F + + + YD KW+ IE ++ Sbjct: 135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDGCSSGDIHGYDVSQDKWHRIETDLLK 219
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy TrEMBL
Match: I1JRW3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0 Identity = 304/405 (75.06%), Postives = 350/405 (86.42%), Query Frame = -3 Query: 563 MEGETSWNSHCADDMSKDIGEFDSFSELSDEGNKE-TIISVDSILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGP--LTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRNWVEVGRMPHKFFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCFEPRLEIAP 1768 M GETSW SH DD ++ G FDSF ELS+EG KE T +S+D +LPDDLLERILAYLPIASIFRAG V +RWHEIV+S+RF+WN SHVL QKPWYFMFTSSDEP G+A+DP+LRKWY+IELPCI T NWFIASS G+VCFMDNDSRSEL +CNPITK +KL+EPPG+KFSDYSAL++SV+R SH YT++IVKSKQVP N++QWD+SIH+Y+SE +W TSLTEVL GWRGG+ESVIC+ +LYFL+YSTG G ENRH+LVAYN+S+ SS + +P P LTCGRLMNLK KLVMVGGIGKPDRPDIIKGIGIW+LN + W E+ RMPHKFFQGFGELDDVFASSG D+LIYIQSYGAPALL+FD+N K WKWS KCPVSK+FPLQLFTGFCFEPRLEIAP Sbjct: 1 MAGETSWISH-YDDRQRETGAFDSFLELSEEGEKEATAVSLD-VLPDDLLERILAYLPIASIFRAGCVSKRWHEIVNSERFVWNLSHVLPQKPWYFMFTSSDEPGGHAFDPLLRKWYSIELPCIGTSNWFIASSYGMVCFMDNDSRSELCICNPITKTYRKLEEPPGLKFSDYSALAISVNRESHRYTVAIVKSKQVPDNYVQWDISIHLYNSENAIWVTSLTEVLMGWRGGNESVICNEMLYFLVYSTGGGQSENRHALVAYNMSNHSSQGSLTRNFIPVPCSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWLLNDKKWEEIARMPHKFFQGFGELDDVFASSGADDLIYIQSYGAPALLIFDVNHKQWKWSQKCPVSKRFPLQLFTGFCFEPRLEIAP 403
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy TrEMBL
Match: A0A0B2RQJ7_GLYSO (F-box/kelch-repeat protein OS=Glycine soja GN=glysoja_028980 PE=4 SV=1) HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0 Identity = 304/405 (75.06%), Postives = 350/405 (86.42%), Query Frame = -3 Query: 563 MEGETSWNSHCADDMSKDIGEFDSFSELSDEGNKE-TIISVDSILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGP--LTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRNWVEVGRMPHKFFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCFEPRLEIAP 1768 M GETSW SH DD ++ G FDSF ELS+EG KE T +S+D +LPDDLLERILAYLPIASIFRAG V +RWHEIV+S+RF+WN SHVL QKPWYFMFTSSDEP G+A+DP+LRKWY+IELPCI T NWFIASS G+VCFMDNDSRSEL +CNPITK +KL+EPPG+KFSDYSAL++SV+R SH YT++IVKSKQVP N++QWD+SIH+Y+SE +W TSLTEVL GWRGG+ESVIC+ +LYFL+YSTG G ENRH+LVAYN+S+ SS + +P P LTCGRLMNLK KLVMVGGIGKPDRPDIIKGIGIW+LN + W E+ RMPHKFFQGFGELDDVFASSG D+LIYIQSYGAPALL+FD+N K WKWS KCPVSK+FPLQLFTGFCFEPRLEIAP Sbjct: 1 MAGETSWISH-YDDRQRETGAFDSFLELSEEGEKEATAVSLD-VLPDDLLERILAYLPIASIFRAGCVSKRWHEIVNSERFVWNLSHVLPQKPWYFMFTSSDEPGGHAFDPLLRKWYSIELPCIGTSNWFIASSYGMVCFMDNDSRSELCICNPITKTYRKLEEPPGLKFSDYSALAISVNRESHRYTVAIVKSKQVPDNYVQWDISIHLYNSENAIWVTSLTEVLMGWRGGNESVICNEMLYFLVYSTGGGQSENRHALVAYNMSNHSSQGSLTRNFIPVPCSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWLLNDKKWEEIARMPHKFFQGFGELDDVFASSGADDLIYIQSYGAPALLIFDVNHKQWKWSQKCPVSKRFPLQLFTGFCFEPRLEIAP 403
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy TrEMBL
Match: V7BRP3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G109200g PE=4 SV=1) HSP 1 Score: 622.083 bits (1603), Expect = 0.000e+0 Identity = 300/405 (74.07%), Postives = 346/405 (85.43%), Query Frame = -3 Query: 563 MEGETSWNSHCADDMSKDIGEFDSFSELSDEGNKE-TIISVDSILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGP--LTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRNWVEVGRMPHKFFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCFEPRLEIAP 1768 M GETSW SH DD ++ G FDSF EL +EG+K+ T +S+D ILPDDLLERILAYLPIASIFRAG V +RWHE V+S+RFLWN SHVL QKPWYFMFTSSDEP+GYA+DP+ RKWY+IELPCI T NWFIASS G+VCFMDNDSRSEL +CNPITK +KL+EP G+KFSDYSAL++SV+R SH Y+++IVKSKQVP NF QWD+SIH+Y+S W T+LTEVL GWRGGDESVIC+G+LYFL+YSTG G PENRH+L+AYN+S+RSS + +P P LTCGRLMNLK KLVMVGGIGKPDRPDIIKGIGIW+LN + W E+ RMPHKFFQGFGE DDVFASSG D+LIYIQSYGAPALL+FD + K WKWS KCPV+K+FPLQLFTGFCFEPRLEIAP Sbjct: 1 MAGETSWISH-YDDRQRESGVFDSFLELGEEGDKDATAVSLDVILPDDLLERILAYLPIASIFRAGCVSKRWHESVNSERFLWNLSHVLPQKPWYFMFTSSDEPIGYAFDPVFRKWYSIELPCIGTSNWFIASSIGMVCFMDNDSRSELCICNPITKTYRKLEEPLGLKFSDYSALAISVNRESHIYSVAIVKSKQVPENFFQWDISIHVYNSVNTTWVTTLTEVLMGWRGGDESVICNGMLYFLVYSTGGGQPENRHALIAYNMSNRSSQCSLTRSFIPVPCSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWLLNDKRWEEIARMPHKFFQGFGEFDDVFASSGADDLIYIQSYGAPALLIFDTSHKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 404
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy TrEMBL
Match: A0A059CI46_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02335 PE=4 SV=1) HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0 Identity = 303/406 (74.63%), Postives = 343/406 (84.48%), Query Frame = -3 Query: 563 IMEGETSWNSHCADDMSKDIGEFDSFSELSDEGNKE-TIISVDSILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYTIELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXP--VPGPLTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRNWVEVGRMPHKFFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCFEPRLEIAP 1771 +M+GETSW S C D ++DI +++ FSELSDEGN+ + +S+D ILPDD+LERILA LP+ASIFRAGSVC+RW EIVSS+RFLWN S VLSQKPWYFMFTS+D+P GYAYDPILRKWY IELPC++T NWF ASSCGLV FMDNDSRSEL+VCNPITK +KL EPPG+KFSDYSAL++S SR S+ Y ISIVKSKQ+PGNF+QWDLSIH+YDSE MWATS TEV TGWR GDE VICDG+LYFLIYSTG ENRH L+ Y+LS RSS + VP PLTCGRLMNLKG LVMVGGIGK DRPDIIKGIGIW+L G+ W E+ RMPHKFFQGFGELDDVFASSG D+LIYIQSYG+ LL+FDMN K WKWS KCPV+K+FPLQLFTGF FEPRLEIAP Sbjct: 1 MMDGETSWVS-CNYDTARDIDDYELFSELSDEGNQAASAVSLDVILPDDILERILACLPVASIFRAGSVCKRWQEIVSSRRFLWNLSQVLSQKPWYFMFTSTDDPGGYAYDPILRKWYNIELPCLKTSNWFKASSCGLVSFMDNDSRSELYVCNPITKCSEKLAEPPGLKFSDYSALAMSTSRVSNGYQISIVKSKQIPGNFVQWDLSIHLYDSEARMWATSHTEVFTGWRAGDECVICDGILYFLIYSTGGSLLENRHGLIPYDLSGRSSHDLLINNSIPVPCPLTCGRLMNLKGNLVMVGGIGKQDRPDIIKGIGIWMLKGKEWQEIARMPHKFFQGFGELDDVFASSGMDDLIYIQSYGSSLLLLFDMNLKTWKWSPKCPVTKRFPLQLFTGFSFEPRLEIAP 405
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy TrEMBL
Match: I1NCH0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 590.882 bits (1522), Expect = 0.000e+0 Identity = 296/407 (72.73%), Postives = 340/407 (83.54%), Query Frame = -3 Query: 563 MEGETSWNSHCADDMSKDIGEFDSFSELSDEGNK-ETIISVDSILPDDLLERILAYLPIASIFRAGSVCRRWHEIVSSKRFLWNFSHVLSQKPWYFMFTSSDEPVGYAYDPILRKWYT--IELPCIQTPNWFIASSCGLVCFMDNDSRSELHVCNPITKICKKLQEPPGMKFSDYSALSLSVSRTSHNYTISIVKSKQVPGNFLQWDLSIHIYDSETMMWATSLTEVLTGWRGGDESVICDGVLYFLIYSTGVGTPENRHSLVAYNXXXXXXXXXXXXXPVPGP--LTCGRLMNLKGKLVMVGGIGKPDRPDIIKGIGIWVLNGRNWVEVGRMPHKFFQGFGELDDVFASSGTDNLIYIQSYGAPALLVFDMNQKLWKWSLKCPVSKKFPLQLFTGFCFEPRLEIAP 1768 M GETSW SH DD ++ G FDSF EL +EG K T +S+D +LPDDLLERILAYLPIASIFRAG V +RWHEIV+S+RF+WN SHVL QKPWYFMFTSSDEP GYA+DP+LRKWY IELPCI T NWFIASS G+VCFMDNDSRSE+ +CNPITK +KL+EPPG+K SDYSAL++SV+R SH YT++IVKSKQVP NF+QWD+SIH+Y+SE W TSLTEVL GWRGG+ESVIC+G+L FL+YSTG G P NRH+L+AYN+S+ SS + +P P LTCGRLMNLK KLVMVGGIGKPDRPDIIKGIGIW+L + W E+ RMPHKFFQGFGE DDVFASSG D+LIYIQSYG PALL+FD+N K WKWS KCPV K+FPLQLFTGFCFE RLEIAP Sbjct: 1 MAGETSWISH-YDDRQRETGAFDSFLELGEEGEKEATAVSLD-VLPDDLLERILAYLPIASIFRAGCVSKRWHEIVNSERFVWNLSHVLPQKPWYFMFTSSDEPDGYAFDPVLRKWYRYRIELPCIGTSNWFIASSYGMVCFMDNDSRSEICICNPITKTYRKLEEPPGLKVSDYSALAISVNRESHCYTVAIVKSKQVPENFVQWDISIHLYNSENATWVTSLTEVLMGWRGGNESVICNGMLCFLVYSTGGGQPVNRHALIAYNMSNHSSQGSLTRNFIPVPFSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWLLKDKKWEEIARMPHKFFQGFGEFDDVFASSGADDLIYIQSYGGPALLIFDVNHKQWKWSQKCPVGKRFPLQLFTGFCFEARLEIAP 405 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 9
BLAST of g.barbadense_cottongen_reftransV1_0094222 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094222 ID=g.barbadense_cottongen_reftransV1_0094222; Name=g.barbadense_cottongen_reftransV1_0094222; organism=Gossypium barbadense; type=contig; length=1911bpback to top |