g.barbadense_cottongen_reftransV1_0094200, g.barbadense_cottongen_reftransV1_0094200 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX1_PIG (Glutaredoxin-1 OS=Sus scrofa GN=GLRX PE=1 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 2.756e-7 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = -2 Query: 923 IAFVFCIFPGDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 1111 + FV D ++IQ L + TG RTVP VFIG + IGGC ++HK G+L+ L + GA+ Sbjct: 43 LEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQIGAL 105
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 4.674e-7 Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = -2 Query: 941 YCQYELRLDLQLFLALKINSENISTLVVKVNIAFVFCIFPGDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLL 1204 YC Y +R ++F LK N +V++++ DG +IQ+ L + G+ TVP VF+ G+H+GG D T H G+L LL Sbjct: 50 YCPYSMRAK-RIFRDLKENP-----YIVELDLR-------EDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX1_BOVIN (Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3) HSP 1 Score: 53.9138 bits (128), Expect = 5.240e-7 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = -2 Query: 923 IAFVFCIFPGDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 1111 + FV G+ S+IQ L + TG RTVP VFIG + IGGC + +H+ G+L+ L + GA+ Sbjct: 43 LEFVDITAAGNISEIQDYLQQLTGARTVPRVFIGQECIGGCTDLVNMHERGELLTRLKQMGAL 105
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.269e-7 Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = -2 Query: 935 GSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTE 1078 G+ Q AL + TG RTVP +F+ G IGG T LHKEGKL+PL+ + Sbjct: 102 GNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 149
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 7.421e-7 Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = -2 Query: 917 IAFVFCIFPGDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITK 1111 + FV D S+IQ L + TG RTVP VF+G IGGC +A+ ++G+L+ L E GA+ + Sbjct: 42 LEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGALRQ 106
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A0D2RWD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G031800 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 6.154e-29 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV Sbjct: 50 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 107 HSP 2 Score: 99.3673 bits (246), Expect = 1.181e-20 Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELD+E Sbjct: 1 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDKE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: W9SBA6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020532 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.681e-25 Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = -2 Query: 911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081 DG++IQAALAEWTGQRTVPNVFIGGKHIGGCD+TMALHKEGKLVPLLTEAGA+ K+S Sbjct: 86 DGAEIQAALAEWTGQRTVPNVFIGGKHIGGCDATMALHKEGKLVPLLTEAGALAKAS 142
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A076KWF9_TOBAC (Gluaredoxin OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.801e-25 Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -2 Query: 911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081 DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKLVPLLTEAGA+ KSS Sbjct: 50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLVPLLTEAGALAKSS 106 HSP 2 Score: 81.2629 bits (199), Expect = 2.397e-14 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 MAL KAK+IVS NPVVVFSK+YCPFCV VK LL +LGASF A+ELD E Sbjct: 1 MALAKAKEIVSANPVVVFSKTYCPFCVSVKDLLSKLGASFNAVELDTE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A067EMY2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0339621mg PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.244e-25 Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH+EGKLVPLLTEAGA+ K++ Sbjct: 1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 58
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: B3F8F4_SOLTU (Glutaredoxin OS=Solanum tuberosum GN=GRX3 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.438e-25 Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKLVPLLTEAGA+ K+S Sbjct: 50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLVPLLTEAGALAKTST 107 HSP 2 Score: 78.9518 bits (193), Expect = 1.207e-13 Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E Sbjct: 1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: K4C310_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=LOC544298 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.180e-24 Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKL+PLLTEAGAI K+S Sbjct: 50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLLPLLTEAGAIAKTST 107 HSP 2 Score: 78.9518 bits (193), Expect = 1.196e-13 Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E Sbjct: 1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A0B0P648_GOSAR (Glutaredoxin-C2-like protein OS=Gossypium arboreum GN=F383_26431 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.242e-24 Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DG+DIQAALAEWTGQRTVPNVFIGG HIGGCDST LH +GKLVPLLTEAGA TKSSV Sbjct: 50 DGADIQAALAEWTGQRTVPNVFIGGNHIGGCDSTTGLHNQGKLVPLLTEAGAFTKSSV 107 HSP 2 Score: 92.0485 bits (227), Expect = 3.453e-18 Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 MALQKAKDI+STN VVVFSKSYCPFCVDVKQLLQ+LGASFK IELD+E Sbjct: 1 MALQKAKDIISTNTVVVFSKSYCPFCVDVKQLLQKLGASFKVIELDKE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A1ECK0_9ROSI (Putative glutaredoxin OS=Citrus hybrid cultivar PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.711e-24 Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH+EGKLVPLLTEAGA+ K++ Sbjct: 50 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 107
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: M0ZI72_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000482 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.897e-24 Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = -2 Query: 911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081 DGS+IQAALAEWTGQRT+PNVFIGGKHIGGCDST ALH+EG LVPLLTEAGA KSS Sbjct: 50 DGSEIQAALAEWTGQRTIPNVFIGGKHIGGCDSTTALHREGNLVPLLTEAGAPVKSS 106 HSP 2 Score: 77.0258 bits (188), Expect = 6.303e-13 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 M L KAK+I++ NPVVVFSK+YCPFCV VK LL +G SFKAIELD E Sbjct: 1 MVLTKAKEIITANPVVVFSKTYCPFCVSVKDLLSNVGTSFKAIELDSE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: V4THB5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017265mg PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 8.577e-24 Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH EGKLVPLLTEAGA+ K++ Sbjct: 50 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTAA 107 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094200 ID=g.barbadense_cottongen_reftransV1_0094200; Name=g.barbadense_cottongen_reftransV1_0094200; organism=Gossypium barbadense; type=contig; length=2606bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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