g.barbadense_cottongen_reftransV1_0094200, g.barbadense_cottongen_reftransV1_0094200 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRX2 PE=1 SV=3) HSP 1 Score: 59.3066 bits (142), Expect = 1.206e-8 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = -2 Query: 941 GDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLL 1084 +GS+IQ AL E +GQ+TVPNV+I GKHIGG L K GKL +L Sbjct: 91 SNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 2.562e-8 Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = -2 Query: 929 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAG 1081 DG IQ AL E G+RTVP VFI GKH+GG D T+ ++ G+L LL +G Sbjct: 79 DGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2) HSP 1 Score: 57.7658 bits (138), Expect = 2.919e-8 Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = -2 Query: 923 DGSDIQAALAEWTGQRT-VPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 1081 +G D++ ALA G+ VP VFIGGK +G D M+LH GKLVPLL EAGA+ Sbjct: 49 NGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 5.368e-8 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = -2 Query: 941 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLL 1081 DG +IQ AL++ G+RTVP VF+ GKH+GG D T+ ++ GKL LL Sbjct: 82 DGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 5.562e-8 Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = -2 Query: 935 GSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTE 1078 G+ Q AL + TG+RTVP +F+ G+ IGG T LHKEGKL+PL+ + Sbjct: 98 GNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLVHQ 145
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 5.899e-8 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = -2 Query: 935 GSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTE 1078 GS Q AL + TG+RTVP +F+ G IGG T LHKEGKL+PL+ + Sbjct: 99 GSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 146
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 6.443e-8 Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = -2 Query: 932 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEA 1081 G +Q L TGQ TVPNVF+ GKHIGGC T+ L+++G L +L EA Sbjct: 118 QGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 8.118e-8 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = -2 Query: 935 GSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTE 1078 GS Q AL + TG+RTVP +F+ G IGG T LHKEGKL+PL+ + Sbjct: 98 GSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLVHQ 145
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRX1 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 8.661e-8 Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = -2 Query: 983 SVSTLSSIGDLVS*FNIVKQYAPHRIVVDAYMEILYCQYELRLDLQLFLALKINSENISTLVVKVNIAFVFCIFPGDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDS 1309 S T+ + DL+ A + I V + YC L LF LK+ + LV+++N +G+DIQAAL E GQRTVPN++I GKHIGG D Sbjct: 3 SQETIKHVKDLI---------AENEIFVASKTYCPYCHAALNT---LFEKLKVPRSKV--LVLQLNDM-------KEGADIQAALYEINGQRTVPNIYINGKHIGGNDD 90
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.536e-7 Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = -2 Query: 935 GSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTE 1078 G+ Q AL + TG+RTVP +F+ G IGG T LHKEGKL+PL+ + Sbjct: 105 GNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 152
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A0D2RWD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G031800 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 6.154e-29 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV Sbjct: 50 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 107 HSP 2 Score: 99.3673 bits (246), Expect = 1.181e-20 Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELD+E Sbjct: 1 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDKE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: W9SBA6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020532 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.681e-25 Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = -2 Query: 911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081 DG++IQAALAEWTGQRTVPNVFIGGKHIGGCD+TMALHKEGKLVPLLTEAGA+ K+S Sbjct: 86 DGAEIQAALAEWTGQRTVPNVFIGGKHIGGCDATMALHKEGKLVPLLTEAGALAKAS 142
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A076KWF9_TOBAC (Gluaredoxin OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.801e-25 Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -2 Query: 911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081 DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKLVPLLTEAGA+ KSS Sbjct: 50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLVPLLTEAGALAKSS 106 HSP 2 Score: 81.2629 bits (199), Expect = 2.397e-14 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 MAL KAK+IVS NPVVVFSK+YCPFCV VK LL +LGASF A+ELD E Sbjct: 1 MALAKAKEIVSANPVVVFSKTYCPFCVSVKDLLSKLGASFNAVELDTE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A067EMY2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0339621mg PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.244e-25 Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH+EGKLVPLLTEAGA+ K++ Sbjct: 1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 58
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: B3F8F4_SOLTU (Glutaredoxin OS=Solanum tuberosum GN=GRX3 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.438e-25 Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKLVPLLTEAGA+ K+S Sbjct: 50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLVPLLTEAGALAKTST 107 HSP 2 Score: 78.9518 bits (193), Expect = 1.207e-13 Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E Sbjct: 1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: K4C310_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=LOC544298 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.180e-24 Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKL+PLLTEAGAI K+S Sbjct: 50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLLPLLTEAGAIAKTST 107 HSP 2 Score: 78.9518 bits (193), Expect = 1.196e-13 Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E Sbjct: 1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A0B0P648_GOSAR (Glutaredoxin-C2-like protein OS=Gossypium arboreum GN=F383_26431 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.242e-24 Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DG+DIQAALAEWTGQRTVPNVFIGG HIGGCDST LH +GKLVPLLTEAGA TKSSV Sbjct: 50 DGADIQAALAEWTGQRTVPNVFIGGNHIGGCDSTTGLHNQGKLVPLLTEAGAFTKSSV 107 HSP 2 Score: 92.0485 bits (227), Expect = 3.453e-18 Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 MALQKAKDI+STN VVVFSKSYCPFCVDVKQLLQ+LGASFK IELD+E Sbjct: 1 MALQKAKDIISTNTVVVFSKSYCPFCVDVKQLLQKLGASFKVIELDKE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A1ECK0_9ROSI (Putative glutaredoxin OS=Citrus hybrid cultivar PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.711e-24 Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH+EGKLVPLLTEAGA+ K++ Sbjct: 50 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 107
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: M0ZI72_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000482 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.897e-24 Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = -2 Query: 911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081 DGS+IQAALAEWTGQRT+PNVFIGGKHIGGCDST ALH+EG LVPLLTEAGA KSS Sbjct: 50 DGSEIQAALAEWTGQRTIPNVFIGGKHIGGCDSTTALHREGNLVPLLTEAGAPVKSS 106 HSP 2 Score: 77.0258 bits (188), Expect = 6.303e-13 Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -2 Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464 M L KAK+I++ NPVVVFSK+YCPFCV VK LL +G SFKAIELD E Sbjct: 1 MVLTKAKEIITANPVVVFSKTYCPFCVSVKDLLSNVGTSFKAIELDSE 48
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: V4THB5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017265mg PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 8.577e-24 Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = -2 Query: 908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081 DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH EGKLVPLLTEAGA+ K++ Sbjct: 50 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTAA 107 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094200 ID=g.barbadense_cottongen_reftransV1_0094200; Name=g.barbadense_cottongen_reftransV1_0094200; organism=Gossypium barbadense; type=contig; length=2606bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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