g.barbadense_cottongen_reftransV1_0094183, g.barbadense_cottongen_reftransV1_0094183 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.039e-14 Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2 Query: 721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960 ++++ ++ Y + I ++ L FV++ DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL A+ +G LQ LLAAS Sbjct: 47 VIFSKSYCPYCLRSKRIFSQ-LKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLLAAS 130 HSP 2 Score: 53.9138 bits (128), Expect = 4.013e-7 Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -3 Query: 1617 AKANNSASAFVQNAIFSNKIVMFSKSYCPY 1706 A A NS SAFVQNAI SNKIV+FSKSYCPY Sbjct: 27 AGAANSVSAFVQNAILSNKIVIFSKSYCPY 56
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.318e-13 Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = -2 Query: 721 SRDLLYNSTFLEY-ICSKRVILNEALTC*AFVLD---DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969 +R +++ T+ Y + +KR+ + LD DG EIQ V+LDLVGR TVPQVFVNG+H+GGSDD ++A NG LQ LL S Sbjct: 41 NRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNS 127
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2) HSP 1 Score: 63.5438 bits (153), Expect = 2.648e-10 Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = -2 Query: 697 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS*C*KEGNK 873 +DG IQ + ++VGR TVPQVF+NGKH+GGSDD DA +G L LL S GNK Sbjct: 78 EDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS-----GNK 131
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 7.751e-10 Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 Query: 730 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 873 +DG EIQ + D+VGR TVPQVFV+GKH+GGSDD +A +G L LL Sbjct: 81 EDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: M0ZW02_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003617 PE=4 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.333e-14 Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = -2 Query: 730 LYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 957 +++ ++ Y + I NE L FV+ DDGA IQ V+LDLVGR TVPQVFVNGKHIGGSDDL +AV +G LQSLL Sbjct: 143 IFSKSYCPYCKRAKGIFNE-LQEQPFVVELDLRDDGARIQDVLLDLVGRSTVPQVFVNGKHIGGSDDLRNAVESGRLQSLL 222
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0B2SCB5_GLYSO (Glutaredoxin-C3 OS=Glycine soja GN=glysoja_003679 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 9.962e-14 Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = -2 Query: 721 SRDLLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969 +R +++ ++ Y + +L E L FV+ DDG +IQ V+LDL+GR TVPQVFVNGKHIGGSDDLS AV +G LQ L +AS Sbjct: 43 NRIAVFSKSYCPYCLRAKRLLAE-LNEKPFVVELDLRDDGYQIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLPSAS 129
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: V4SP04_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026749mg PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.345e-13 Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -2 Query: 721 LLYNSTFLEY-ICSKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960 ++++ ++ Y + +KR+ LNE FV+ DDGA+IQY++LDLVGR TVPQ+FVNG+HIGG+DDL AV +G LQ LL S Sbjct: 50 VIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQLLGTS 133
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A067G677_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032253mg PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.345e-13 Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -2 Query: 721 LLYNSTFLEY-ICSKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960 ++++ ++ Y + +KR+ LNE FV+ DDGA+IQY++LDLVGR TVPQ+FVNG+HIGG+DDL AV +G LQ LL S Sbjct: 50 VIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQLLGTS 133
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: G7KG98_MEDTR (Glutaredoxin C4 OS=Medicago truncatula GN=MTR_5g021090 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.182e-13 Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = -2 Query: 721 SRDLLYNSTFLEY-ICSKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969 +R +++ ++ Y + +KRV LNE FV+ DDG +IQ V+LDL+GR TVPQVFV GKHIGGSDDLS AV +G LQ LL +S Sbjct: 43 NRITIFSKSYCPYCLRAKRVFVELNEQ----PFVIELDLRDDGYQIQGVLLDLIGRRTVPQVFVYGKHIGGSDDLSAAVQSGELQKLLKSS 129 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 4
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094183 ID=g.barbadense_cottongen_reftransV1_0094183; Name=g.barbadense_cottongen_reftransV1_0094183; organism=Gossypium barbadense; type=contig; length=1987bpback to top |