g.barbadense_cottongen_reftransV1_0094183, g.barbadense_cottongen_reftransV1_0094183 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094183
Unique Nameg.barbadense_cottongen_reftransV1_0094183
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1987
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At10chromosomeg.barbadense_cottongen_reftransV1_0094183:1..1987 .
At10:20755502..20757600 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.039e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I ++ L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL  A+ +G LQ LLAAS
Sbjct:   47 VIFSKSYCPYCLRSKRIFSQ-LKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLLAAS 130          

HSP 2 Score: 53.9138 bits (128), Expect = 4.013e-7
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -3
Query: 1617 AKANNSASAFVQNAIFSNKIVMFSKSYCPY 1706
            A A NS SAFVQNAI SNKIV+FSKSYCPY
Sbjct:   27 AGAANSVSAFVQNAILSNKIVIFSKSYCPY 56          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.318e-13
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  721 SRDLLYNSTFLEY-ICSKRVILNEALTC*AFVLD---DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ T+  Y + +KR+  +         LD   DG EIQ V+LDLVGR TVPQVFVNG+H+GGSDD ++A  NG LQ LL  S
Sbjct:   41 NRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNS 127          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.648e-10
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = -2
Query:  697 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS*C*KEGNK 873
            +DG  IQ  + ++VGR TVPQVF+NGKH+GGSDD  DA  +G L  LL  S     GNK
Sbjct:   78 EDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS-----GNK 131          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.751e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2
Query:  730 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 873
            +DG EIQ  + D+VGR TVPQVFV+GKH+GGSDD  +A  +G L  LL
Sbjct:   81 EDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: M0ZW02_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003617 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.333e-14
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  730 LYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 957
            +++ ++  Y    + I NE L    FV+     DDGA IQ V+LDLVGR TVPQVFVNGKHIGGSDDL +AV +G LQSLL
Sbjct:  143 IFSKSYCPYCKRAKGIFNE-LQEQPFVVELDLRDDGARIQDVLLDLVGRSTVPQVFVNGKHIGGSDDLRNAVESGRLQSLL 222          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0B2SCB5_GLYSO (Glutaredoxin-C3 OS=Glycine soja GN=glysoja_003679 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.962e-14
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = -2
Query:  721 SRDLLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ ++  Y    + +L E L    FV+     DDG +IQ V+LDL+GR TVPQVFVNGKHIGGSDDLS AV +G LQ L +AS
Sbjct:   43 NRIAVFSKSYCPYCLRAKRLLAE-LNEKPFVVELDLRDDGYQIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLPSAS 129          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: V4SP04_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026749mg PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.345e-13
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  721 LLYNSTFLEY-ICSKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y + +KR+   LNE      FV+     DDGA+IQY++LDLVGR TVPQ+FVNG+HIGG+DDL  AV +G LQ LL  S
Sbjct:   50 VIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQLLGTS 133          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A067G677_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032253mg PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.345e-13
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  721 LLYNSTFLEY-ICSKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y + +KR+   LNE      FV+     DDGA+IQY++LDLVGR TVPQ+FVNG+HIGG+DDL  AV +G LQ LL  S
Sbjct:   50 VIFSKSYCPYCLRAKRIFADLNEQ----PFVVELDLRDDGAQIQYILLDLVGRRTVPQIFVNGEHIGGADDLKAAVLSGQLQQLLGTS 133          
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: G7KG98_MEDTR (Glutaredoxin C4 OS=Medicago truncatula GN=MTR_5g021090 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.182e-13
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  721 SRDLLYNSTFLEY-ICSKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ ++  Y + +KRV   LNE      FV+     DDG +IQ V+LDL+GR TVPQVFV GKHIGGSDDLS AV +G LQ LL +S
Sbjct:   43 NRITIFSKSYCPYCLRAKRVFVELNEQ----PFVIELDLRDDGYQIQGVLLDLIGRRTVPQVFVYGKHIGGSDDLSAAVQSGELQKLLKSS 129          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
GRXC3_ARATH1.039e-1448.24Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ2.318e-1348.28Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC4_ARATH2.648e-1054.24Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ7.751e-1060.42Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M0ZW02_SOLTU5.333e-1456.79Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2SCB5_GLYSO9.962e-1451.14Glutaredoxin-C3 OS=Glycine soja GN=glysoja_003679 ... [more]
V4SP04_9ROSI1.345e-1350.00Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067G677_CITSI1.345e-1350.00Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
G7KG98_MEDTR2.182e-1351.65Glutaredoxin C4 OS=Medicago truncatula GN=MTR_5g02... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094183 ID=g.barbadense_cottongen_reftransV1_0094183; Name=g.barbadense_cottongen_reftransV1_0094183; organism=Gossypium barbadense; type=contig; length=1987bp
CCTCAGGTCCTAGGCACATGCAGTGGTGCTGCCAGTCATTCAAATTATTG
ACATTTTGGCACTCTAGGCCTATTCTGTTTTATAAATGTCTACAAGCCTT
CACCCCAAAAACAAAGTCCCACTGGCCATTGCCTGTGAACTGTGAATGTC
ATTACTGCTTATTATTATCTCATTTAAATGTGGCTGGGCTGCTGGGGCAA
TTTGTTGAGAGATGTCCTGCCAATAAATATGCACAAACTCTGGGGAAATC
CTTTAATCAGAATAGTTTCATTATGATTCAAAATCTTTGTTCAGTTAGAG
CCAAATTTCTTCTTTGTTTTCAAGGCCAAACATTTACATATGATTCTTCA
GTCAAATCCATGAATCAAATCCAACACCATAAAAATCCCACTTCAAAGAA
AGCATGCCTATACCAAGAAACAACAAAATAGAAAAAAGGGATCCATTGAC
AGTAAGTATAAGATTATGTGAAAACTAAATCAAAGTCATTGCTCCCTCCC
CACACCTACATTTACAATGAACTTTAGACCTAAAACATAGTCATTCTCTT
CCATGATGAAGATGAAATATAAGATAACCTCAAAGAGACATGCCATTATC
ACAGCGCACTCAACAAAATCTTGCAGTGAACTTACTAAGTTCACAACCCA
GAAATGATCTTCTAATCCACAGGCAGCTTTACAGTTCACAAGTCAATTTA
TTTCCTTCTTTCTAACATTAACTTGCAGCTAGAAGGCTTTGCAATGTACC
ATTATGGACTGCATCACTGAGATCATCAGAGCCTCCAATATGCTTTCCAT
TCACAAACACTTGTGGAACAGTTCCACGACCTACCAAATCCAGGATGACA
TACTGGATTTCAGCTCCATCATCTAAAACAAAAGCTCAACAAGTCAAAGC
TTCATTTAAAATTACTCTTTTTGAACATATATATTCTAAGAAGGTCGAAT
TGTATAAAAGGTCCCTGGACTATGTGTTTTTGGCAGATTTTGCCCCTCTA
CCATAATTTGATCATCTCTACATTCAATTGATTCAATCAAATAATTTGAC
TACCTTATTTTTCTTTAAACATTTGACGTACAAAAAATGCCAATATGTAT
ATGGCACATCATCATATGATAAAAAAAAAAGCGATGTCAAACTGTTTGAC
TGAATTAACAGAACATATTGATCTCGAGTTTGAAAATACACATCTCGAGA
CATAGGGAACTAAAAATGATCAAATTATAGTAGAGAGACTAAACCCATAA
AAAATGCCTAGTACAAGGACCTTCTATACAATTTAACCTATAAAGAACAT
ACATATCAGAAGCAGATAAAGAACATCCACAAATACCTCGGAGATCAAGC
TCTACAACATAAGGTTTCTCATTTAACTCAGAGAAAATGCGCTTGGCACG
CATGCAATGCCTACGAACAAGACAAAGCGAAAGAAGTTGGAGCAACCCAT
CAATGAATTGACGTTTCAGTTCAACTTTAGAAGAAATACCCACGAAGAAA
ATGGGGTTAAAAAAAGGGCAATAAGATTGATTATGCGGAGTACTAGATAA
CTATGATATCTTGATTCTTTATTATGAAGATTGAGAGGTTTAGATGAAAC
TGTAAATAACAAAGACATACGGGCAATAGGATTTGGAGAACATAACGATC
TTGTTGGAGAAGATGGCGTTTTGGACAAAGGCGGAGGCTGAATTGTTGGC
TTTGGCTAGCCTCAGAGCATTTCCAATCACCAGCAACACCAAAACTGCGC
CAAGTAGTGAAAGGATCAACCTCGATTGCCTCACCATGTCTTCTATTTCT
TTTATTCCAAACGGGGGAATTTCTGGGGTTTTGCCTGTAACTCACAAAGG
AATCAACTTTACCGATTTGTAGAGTTTCATATACATCAAAGTGCGTGTTT
GATTCATCATCTCCAGAGGCCTAGGCGAGTAGCCCATCAAATTTGAGGCC
AATTCTAGTTCATTGGACTTCCAAGTTTGAGACTTCG
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