g.barbadense_cottongen_reftransV1_0094183, g.barbadense_cottongen_reftransV1_0094183 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094183
Unique Nameg.barbadense_cottongen_reftransV1_0094183
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1987
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At10chromosomeg.barbadense_cottongen_reftransV1_0094183:1..1987 .
At10:20755502..20757600 +
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.039e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I ++ L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL  A+ +G LQ LLAAS
Sbjct:   47 VIFSKSYCPYCLRSKRIFSQ-LKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLLAAS 130

HSP 2 Score: 53.9138 bits (128), Expect = 4.013e-7
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -3 
Query: 1617 AKANNSASAFVQNAIFSNKIVMFSKSYCPY 1706
            A A NS SAFVQNAI SNKIV+FSKSYCPY
Sbjct:   27 AGAANSVSAFVQNAILSNKIVIFSKSYCPY 56
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.318e-13
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = -2 
Query:  721 SRDLLYNSTFLEY-ICSKRVILNEALTC*AFVLD---DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ T+  Y + +KR+  +         LD   DG EIQ V+LDLVGR TVPQVFVNG+H+GGSDD ++A  NG LQ LL  S
Sbjct:   41 NRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNS 127
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.648e-10
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = -2 
Query:  697 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS*C*KEGNK 873
            +DG  IQ  + ++VGR TVPQVF+NGKH+GGSDD  DA  +G L  LL  S     GNK
Sbjct:   78 EDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS-----GNK 131
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.751e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:  730 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 873
            +DG EIQ  + D+VGR TVPQVFV+GKH+GGSDD  +A  +G L  LL
Sbjct:   81 EDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A078FZJ2_BRANA (BnaA09g07960D protein OS=Brassica napus GN=BnaA09g07960D PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.098e-15
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I  E L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL+D+V NG LQ LLAAS
Sbjct:   51 VIFSKSYCPYCLRSKRIFRE-LKEQPFVVELDLREDGDKIQYELLEFVGRRTVPQVFVNGKHIGGSDDLADSVENGQLQKLLAAS 134
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: M4F7W3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037174 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.098e-15
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I  E L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL+D+V NG LQ LLAAS
Sbjct:   51 VIFSKSYCPYCLRSKRIFRE-LKEQPFVVELDLREDGDKIQYELLEFVGRRTVPQVFVNGKHIGGSDDLADSVENGQLQKLLAAS 134
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0B2RUZ7_GLYSO (Glutaredoxin-C3 OS=Glycine soja GN=glysoja_003197 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.897e-15
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = -2 
Query:  721 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 873
            DDG +IQ V+LDL+GR TVPQVFVNGKHIGGSDDLS AV +G LQ LL+AS
Sbjct:   79 DDGFQIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLLSAS 129
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: C6T4Y1_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.458e-15
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = -2 
Query:  721 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 873
            DDG +IQ V+LDL+GR TVPQVFVNGKHIGGSDDLS AV +G LQ LL+AS
Sbjct:   79 DDGFQIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLLSAS 129
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: Q0ZR58_EUTHA (Putative uncharacterized protein OS=Eutrema halophilum PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.995e-15
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I +E L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL  AV NG LQ LLAAS
Sbjct:   50 VIFSKSYCPYCLRSKRIFSE-LKEQPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAAVENGQLQKLLAAS 133
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: C6T1G2_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.210e-14
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = -2 
Query:  721 SRDLLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ ++  Y    + +L E L    FV+     DDG +IQ V+LDL+GR TVPQVFVNGKHIGGSDDLS AV +G LQ LL+AS
Sbjct:   43 NRIAVFSKSYCPYCLRAKRLLAE-LNEKPFVVELDLRDDGYQIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLLSAS 129
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: V4KMG4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10005112mg PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.712e-14
Identity = 47/83 (56.63%), Postives = 54/83 (65.06%), Query Frame = -2 
Query:  721 YNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 954
            Y   FL  + SKR+     L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL  AV NG LQ LLAAS
Sbjct:   56 YCPFFLVCLRSKRIF--SELKEQPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAAVENGQLQKLLAAS 136
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: W9SCZ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026770 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.788e-14
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = -2 
Query:  721 LYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 957
            +++ ++  Y    + I +E L    FV+     DDGA+IQ V+LDLVGR TVPQ+FVNGKHIGGSDDL  AV NG LQ LL  S
Sbjct:   47 IFSKSYCPYCLRAKRIFSE-LHQQPFVVELDLRDDGAQIQNVLLDLVGRQTVPQIFVNGKHIGGSDDLKAAVLNGELQKLLTTS 129
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A059AI74_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02390 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.278e-14
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = -2 
Query:  721 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 873
            DDGA IQ V+LDL GR TVPQVFVNGKH+GGSDDLS AV +G LQ LLA+S
Sbjct:   84 DDGARIQNVLLDLTGRRTVPQVFVNGKHVGGSDDLSAAVRSGQLQKLLASS 134
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: K4BAY1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g084660.2 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.868e-14
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = -2 
Query:  730 LYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 957
            +++ ++  Y    + I NE L    FV+     DDGA IQ V+LDLVGR TVPQVFVNGKHIGGSDDL +AV +G LQSLL
Sbjct:  143 IFSKSYCPYCKRAKGIFNE-LQEQPFVVELDLRDDGARIQDVLLDLVGRSTVPQVFVNGKHIGGSDDLRNAVESGRLQSLL 222
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
GRXC3_ARATH1.039e-1448.24Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ2.318e-1348.28Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC4_ARATH2.648e-1054.24Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ7.751e-1060.42Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078FZJ2_BRANA3.098e-1551.76BnaA09g07960D protein OS=Brassica napus GN=BnaA09g... [more]
M4F7W3_BRARP3.098e-1551.76Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A0B2RUZ7_GLYSO3.897e-1576.47Glutaredoxin-C3 OS=Glycine soja GN=glysoja_003197 ... [more]
C6T4Y1_SOYBN4.458e-1576.47Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
Q0ZR58_EUTHA7.995e-1551.76Putative uncharacterized protein OS=Eutrema haloph... [more]
C6T1G2_SOYBN1.210e-1452.27Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
V4KMG4_EUTSA1.712e-1456.63Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
W9SCZ9_9ROSA2.788e-1453.57Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A059AI74_EUCGR4.278e-1476.47Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
K4BAY1_SOLLC4.868e-1456.79Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094183 ID=g.barbadense_cottongen_reftransV1_0094183; Name=g.barbadense_cottongen_reftransV1_0094183; organism=Gossypium barbadense; type=contig; length=1987bp
CCTCAGGTCCTAGGCACATGCAGTGGTGCTGCCAGTCATTCAAATTATTG
ACATTTTGGCACTCTAGGCCTATTCTGTTTTATAAATGTCTACAAGCCTT
CACCCCAAAAACAAAGTCCCACTGGCCATTGCCTGTGAACTGTGAATGTC
ATTACTGCTTATTATTATCTCATTTAAATGTGGCTGGGCTGCTGGGGCAA
TTTGTTGAGAGATGTCCTGCCAATAAATATGCACAAACTCTGGGGAAATC
CTTTAATCAGAATAGTTTCATTATGATTCAAAATCTTTGTTCAGTTAGAG
CCAAATTTCTTCTTTGTTTTCAAGGCCAAACATTTACATATGATTCTTCA
GTCAAATCCATGAATCAAATCCAACACCATAAAAATCCCACTTCAAAGAA
AGCATGCCTATACCAAGAAACAACAAAATAGAAAAAAGGGATCCATTGAC
AGTAAGTATAAGATTATGTGAAAACTAAATCAAAGTCATTGCTCCCTCCC
CACACCTACATTTACAATGAACTTTAGACCTAAAACATAGTCATTCTCTT
CCATGATGAAGATGAAATATAAGATAACCTCAAAGAGACATGCCATTATC
ACAGCGCACTCAACAAAATCTTGCAGTGAACTTACTAAGTTCACAACCCA
GAAATGATCTTCTAATCCACAGGCAGCTTTACAGTTCACAAGTCAATTTA
TTTCCTTCTTTCTAACATTAACTTGCAGCTAGAAGGCTTTGCAATGTACC
ATTATGGACTGCATCACTGAGATCATCAGAGCCTCCAATATGCTTTCCAT
TCACAAACACTTGTGGAACAGTTCCACGACCTACCAAATCCAGGATGACA
TACTGGATTTCAGCTCCATCATCTAAAACAAAAGCTCAACAAGTCAAAGC
TTCATTTAAAATTACTCTTTTTGAACATATATATTCTAAGAAGGTCGAAT
TGTATAAAAGGTCCCTGGACTATGTGTTTTTGGCAGATTTTGCCCCTCTA
CCATAATTTGATCATCTCTACATTCAATTGATTCAATCAAATAATTTGAC
TACCTTATTTTTCTTTAAACATTTGACGTACAAAAAATGCCAATATGTAT
ATGGCACATCATCATATGATAAAAAAAAAAGCGATGTCAAACTGTTTGAC
TGAATTAACAGAACATATTGATCTCGAGTTTGAAAATACACATCTCGAGA
CATAGGGAACTAAAAATGATCAAATTATAGTAGAGAGACTAAACCCATAA
AAAATGCCTAGTACAAGGACCTTCTATACAATTTAACCTATAAAGAACAT
ACATATCAGAAGCAGATAAAGAACATCCACAAATACCTCGGAGATCAAGC
TCTACAACATAAGGTTTCTCATTTAACTCAGAGAAAATGCGCTTGGCACG
CATGCAATGCCTACGAACAAGACAAAGCGAAAGAAGTTGGAGCAACCCAT
CAATGAATTGACGTTTCAGTTCAACTTTAGAAGAAATACCCACGAAGAAA
ATGGGGTTAAAAAAAGGGCAATAAGATTGATTATGCGGAGTACTAGATAA
CTATGATATCTTGATTCTTTATTATGAAGATTGAGAGGTTTAGATGAAAC
TGTAAATAACAAAGACATACGGGCAATAGGATTTGGAGAACATAACGATC
TTGTTGGAGAAGATGGCGTTTTGGACAAAGGCGGAGGCTGAATTGTTGGC
TTTGGCTAGCCTCAGAGCATTTCCAATCACCAGCAACACCAAAACTGCGC
CAAGTAGTGAAAGGATCAACCTCGATTGCCTCACCATGTCTTCTATTTCT
TTTATTCCAAACGGGGGAATTTCTGGGGTTTTGCCTGTAACTCACAAAGG
AATCAACTTTACCGATTTGTAGAGTTTCATATACATCAAAGTGCGTGTTT
GATTCATCATCTCCAGAGGCCTAGGCGAGTAGCCCATCAAATTTGAGGCC
AATTCTAGTTCATTGGACTTCCAAGTTTGAGACTTCG
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