g.barbadense_cottongen_reftransV1_0094108, g.barbadense_cottongen_reftransV1_0094108 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy Swiss-Prot
Match: CDI_ARATH (Protein CDI OS=Arabidopsis thaliana GN=CDI PE=2 SV=1) HSP 1 Score: 438.728 bits (1127), Expect = 8.987e-149 Identity = 202/255 (79.22%), Postives = 228/255 (89.41%), Query Frame = 3 Query: 816 MTLANGEAHQVT-NNGDLSK-PFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETKLNA 1574 MT++NG+ T NNG K PF+IFVGYDPREDLAY+VC HSI KRSS+PVEITPI+QSDLR+KGLYWRER +LESTEFSFSRFLTP+L++Y GWA+F+DCDFLYLADIKEL +LIDDKYAIMCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK L+PE+VN QTGAFLHRFQWLED+EIGSIP +WNFLEGHN+VVE D T PKA+HYTRGGPWF+AWK+CEFADLWLNEM +Y +E K A Sbjct: 1 MTISNGDVKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRKKGLYWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLIDDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEIVNTQTGAFLHRFQWLEDEEIGSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWLNEMEEYNKENKKEA 255
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: A0A078FTK4_BRANA (BnaA02g11850D protein OS=Brassica napus GN=BnaA02g11850D PE=4 SV=1) HSP 1 Score: 429.869 bits (1104), Expect = 1.322e-143 Identity = 193/254 (75.98%), Postives = 226/254 (88.98%), Query Frame = 3 Query: 816 MTLANGEAHQVTNNGDLSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETKLNAS 1577 MT++NG++ S PF+IFVGYDPREDLAY+VC HSI KRSS+PVEITPIVQSDLRE+GLYWRERN LESTEFSF+RFLTP+L++Y GWA+F+DCDFLY++DIKEL++LIDDKYA+MCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK LTPE VN Q+GAFLHRFQWLED+EIGS+P +WNFLEGHN+VVEND T PKA+H+TRGGPWF+AWKNC+FADLWL EM +Y +E +A+ Sbjct: 1 MTMSNGDSKT-------STPFRIFVGYDPREDLAYKVCHHSITKRSSIPVEITPIVQSDLRERGLYWRERNNLESTEFSFTRFLTPHLSHYQGWAMFVDCDFLYISDIKELVDLIDDKYAVMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLTPEAVNTQSGAFLHRFQWLEDEEIGSVPFVWNFLEGHNRVVENDPATQPKAVHFTRGGPWFDAWKNCDFADLWLGEMEEYSKENNKDAN 247
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: A0A067E2C7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025316mg PE=4 SV=1) HSP 1 Score: 429.483 bits (1103), Expect = 2.344e-143 Identity = 201/244 (82.38%), Postives = 218/244 (89.34%), Query Frame = 3 Query: 837 AHQVTNNGDL--SKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEET 1562 +VT N + +KPFKIFVGYDPREDLAY VC SILKRSS+PV+ITPIVQSDLR+ GLYWRER + ESTEFSFSRFLTPYLA ++GWA+F+DCDFLYLADIKEL +LIDDKYAIMCVHHDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK LTPEVVN QTGAFLHRFQWLED+EIGSIP +WNFLEGHN VVEND TFPKAIHYTRGGPWFEAWK+CEFADLWL EM +Y E Sbjct: 5 VREVTANRETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGLYWRERGQTESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLEDEEIGSIPFVWNFLEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKEMEEYKNEA 248
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: C6TEE9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 429.869 bits (1104), Expect = 2.522e-143 Identity = 200/261 (76.63%), Postives = 221/261 (84.67%), Query Frame = 3 Query: 783 LCYSRKKLLLSMTLANGEAHQVTNNGDLSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETK 1565 + S K + +NG ++ NN KPFKIFVGYDPREDLAYEVCRHSILKRSS+PVEI PI QSDLR+ GLYWRER + ESTEFSFSRFLTP LANY GWA+F+DCDFLYLA IKEL +LI+DKYAIMCV HDY PKETTKMDGAVQT+YPRKNWSSMVLYNC HPKN+ LTP+ VN QTGAFLHRFQWLEDD IGSIP +WNFLEGHN+VV+ND T PKAIHYTRGGPWFEAWKNCEFADLWLNEM DY+++ K Sbjct: 1 MVLSNGKTEAPLPSSNGGGAEIDNNE--KKPFKIFVGYDPREDLAYEVCRHSILKRSSIPVEIIPIKQSDLRKSGLYWRERGQFESTEFSFSRFLTPCLANYQGWAMFVDCDFLYLAGIKELKDLIEDKYAIMCVQHDYAPKETTKMDGAVQTVYPRKNWSSMVLYNCAHPKNRVLTPDTVNTQTGAFLHRFQWLEDDLIGSIPFVWNFLEGHNRVVDNDPTTSPKAIHYTRGGPWFEAWKNCEFADLWLNEMEDYMKQAK 259
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: A0A0D3AN41_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 429.098 bits (1102), Expect = 2.737e-143 Identity = 195/254 (76.77%), Postives = 227/254 (89.37%), Query Frame = 3 Query: 816 MTLANGEAHQVTNNGDLSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETKLNAS 1577 MT++NG+ T+N F+IFVGYDPREDLAY+VC HSI KRSS+PVEITPIVQSDLRE+GLYWRERN+LESTEFSF+RFLTP+L++Y GWA+F+DCDFLYL+DIKEL++LIDDKYAIMCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK L+PE VN QTGAFLHRFQWLED+EIGS+P +WNFLEGHN+VVEND T PKA+H+TRGGPWF+AWK C+FADLWL+EM +Y +E NA+ Sbjct: 1 MTMSNGDLK--TSNAS----FRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIVQSDLRERGLYWRERNQLESTEFSFTRFLTPHLSDYQGWAMFVDCDFLYLSDIKELVDLIDDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEAVNTQTGAFLHRFQWLEDEEIGSVPFVWNFLEGHNRVVENDPATQPKAVHFTRGGPWFDAWKTCDFADLWLSEMEEYSKENNKNAN 248
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: W9QMX8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019651 PE=4 SV=1) HSP 1 Score: 429.483 bits (1103), Expect = 3.318e-143 Identity = 198/252 (78.57%), Postives = 223/252 (88.49%), Query Frame = 3 Query: 816 MTLANGEAHQVTNNGD--LSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETK 1565 M +G+ H VT N + K FKIFVGYD REDLAYEVCR+SILKR+S+PVEI PI QSDLR+KGLYWRER +LESTEFSFSRFLTP LANY+GWA+F+DCDFLYLADIKEL ++IDDKYA+MCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKN+ LTPEVVN+QTGAFLHRFQWL+D EIGS+P +WNFLEGHNKVVE D TFPKA+HYTRGGPWF+AWK+CEFA LWLNEM Y++E K Sbjct: 1 MGSNDGKIHPVTENDQKKVVKAFKIFVGYDTREDLAYEVCRYSILKRASIPVEICPIKQSDLRKKGLYWRERGQLESTEFSFSRFLTPALANYHGWAMFVDCDFLYLADIKELTDIIDDKYAVMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNRVLTPEVVNSQTGAFLHRFQWLDDSEIGSVPFVWNFLEGHNKVVEGDPSTFPKAVHYTRGGPWFDAWKHCEFAGLWLNEMESYLKEAK 252 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 1
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094108 ID=g.barbadense_cottongen_reftransV1_0094108; Name=g.barbadense_cottongen_reftransV1_0094108; organism=Gossypium barbadense; type=contig; length=1949bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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