g.barbadense_cottongen_reftransV1_0094108, g.barbadense_cottongen_reftransV1_0094108 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094108
Unique Nameg.barbadense_cottongen_reftransV1_0094108
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1949
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy Swiss-Prot
Match: CDI_ARATH (Protein CDI OS=Arabidopsis thaliana GN=CDI PE=2 SV=1)

HSP 1 Score: 438.728 bits (1127), Expect = 8.987e-149
Identity = 202/255 (79.22%), Postives = 228/255 (89.41%), Query Frame = 3
Query:  816 MTLANGEAHQVT-NNGDLSK-PFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETKLNA 1574
            MT++NG+    T NNG   K PF+IFVGYDPREDLAY+VC HSI KRSS+PVEITPI+QSDLR+KGLYWRER +LESTEFSFSRFLTP+L++Y GWA+F+DCDFLYLADIKEL +LIDDKYAIMCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK L+PE+VN QTGAFLHRFQWLED+EIGSIP +WNFLEGHN+VVE D  T PKA+HYTRGGPWF+AWK+CEFADLWLNEM +Y +E K  A
Sbjct:    1 MTISNGDVKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRKKGLYWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLIDDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEIVNTQTGAFLHRFQWLEDEEIGSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWLNEMEEYNKENKKEA 255          
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: A0A078FTK4_BRANA (BnaA02g11850D protein OS=Brassica napus GN=BnaA02g11850D PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 1.322e-143
Identity = 193/254 (75.98%), Postives = 226/254 (88.98%), Query Frame = 3
Query:  816 MTLANGEAHQVTNNGDLSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETKLNAS 1577
            MT++NG++         S PF+IFVGYDPREDLAY+VC HSI KRSS+PVEITPIVQSDLRE+GLYWRERN LESTEFSF+RFLTP+L++Y GWA+F+DCDFLY++DIKEL++LIDDKYA+MCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK LTPE VN Q+GAFLHRFQWLED+EIGS+P +WNFLEGHN+VVEND  T PKA+H+TRGGPWF+AWKNC+FADLWL EM +Y +E   +A+
Sbjct:    1 MTMSNGDSKT-------STPFRIFVGYDPREDLAYKVCHHSITKRSSIPVEITPIVQSDLRERGLYWRERNNLESTEFSFTRFLTPHLSHYQGWAMFVDCDFLYISDIKELVDLIDDKYAVMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLTPEAVNTQSGAFLHRFQWLEDEEIGSVPFVWNFLEGHNRVVENDPATQPKAVHFTRGGPWFDAWKNCDFADLWLGEMEEYSKENNKDAN 247          
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: A0A067E2C7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025316mg PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 2.344e-143
Identity = 201/244 (82.38%), Postives = 218/244 (89.34%), Query Frame = 3
Query:  837 AHQVTNNGDL--SKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEET 1562
              +VT N +   +KPFKIFVGYDPREDLAY VC  SILKRSS+PV+ITPIVQSDLR+ GLYWRER + ESTEFSFSRFLTPYLA ++GWA+F+DCDFLYLADIKEL +LIDDKYAIMCVHHDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK LTPEVVN QTGAFLHRFQWLED+EIGSIP +WNFLEGHN VVEND  TFPKAIHYTRGGPWFEAWK+CEFADLWL EM +Y  E 
Sbjct:    5 VREVTANRETKDNKPFKIFVGYDPREDLAYRVCHRSILKRSSIPVKITPIVQSDLRKSGLYWRERGQTESTEFSFSRFLTPYLAGFDGWAVFVDCDFLYLADIKELCDLIDDKYAIMCVHHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKILTPEVVNTQTGAFLHRFQWLEDEEIGSIPFVWNFLEGHNMVVENDPTTFPKAIHYTRGGPWFEAWKHCEFADLWLKEMEEYKNEA 248          
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: C6TEE9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 2.522e-143
Identity = 200/261 (76.63%), Postives = 221/261 (84.67%), Query Frame = 3
Query:  783 LCYSRKKLLLSMTLANGEAHQVTNNGDLSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETK 1565
            +  S  K    +  +NG   ++ NN    KPFKIFVGYDPREDLAYEVCRHSILKRSS+PVEI PI QSDLR+ GLYWRER + ESTEFSFSRFLTP LANY GWA+F+DCDFLYLA IKEL +LI+DKYAIMCV HDY PKETTKMDGAVQT+YPRKNWSSMVLYNC HPKN+ LTP+ VN QTGAFLHRFQWLEDD IGSIP +WNFLEGHN+VV+ND  T PKAIHYTRGGPWFEAWKNCEFADLWLNEM DY+++ K
Sbjct:    1 MVLSNGKTEAPLPSSNGGGAEIDNNE--KKPFKIFVGYDPREDLAYEVCRHSILKRSSIPVEIIPIKQSDLRKSGLYWRERGQFESTEFSFSRFLTPCLANYQGWAMFVDCDFLYLAGIKELKDLIEDKYAIMCVQHDYAPKETTKMDGAVQTVYPRKNWSSMVLYNCAHPKNRVLTPDTVNTQTGAFLHRFQWLEDDLIGSIPFVWNFLEGHNRVVDNDPTTSPKAIHYTRGGPWFEAWKNCEFADLWLNEMEDYMKQAK 259          
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: A0A0D3AN41_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 429.098 bits (1102), Expect = 2.737e-143
Identity = 195/254 (76.77%), Postives = 227/254 (89.37%), Query Frame = 3
Query:  816 MTLANGEAHQVTNNGDLSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETKLNAS 1577
            MT++NG+    T+N      F+IFVGYDPREDLAY+VC HSI KRSS+PVEITPIVQSDLRE+GLYWRERN+LESTEFSF+RFLTP+L++Y GWA+F+DCDFLYL+DIKEL++LIDDKYAIMCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKNK L+PE VN QTGAFLHRFQWLED+EIGS+P +WNFLEGHN+VVEND  T PKA+H+TRGGPWF+AWK C+FADLWL+EM +Y +E   NA+
Sbjct:    1 MTMSNGDLK--TSNAS----FRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIVQSDLRERGLYWRERNQLESTEFSFTRFLTPHLSDYQGWAMFVDCDFLYLSDIKELVDLIDDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKTLSPEAVNTQTGAFLHRFQWLEDEEIGSVPFVWNFLEGHNRVVENDPATQPKAVHFTRGGPWFDAWKTCDFADLWLSEMEEYSKENNKNAN 248          
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Match: W9QMX8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019651 PE=4 SV=1)

HSP 1 Score: 429.483 bits (1103), Expect = 3.318e-143
Identity = 198/252 (78.57%), Postives = 223/252 (88.49%), Query Frame = 3
Query:  816 MTLANGEAHQVTNNGD--LSKPFKIFVGYDPREDLAYEVCRHSILKRSSVPVEITPIVQSDLREKGLYWRERNKLESTEFSFSRFLTPYLANYNGWALFIDCDFLYLADIKELMELIDDKYAIMCVHHDYTPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNKGLTPEVVNNQTGAFLHRFQWLEDDEIGSIPSIWNFLEGHNKVVENDSKTFPKAIHYTRGGPWFEAWKNCEFADLWLNEMHDYIEETK 1565
            M   +G+ H VT N    + K FKIFVGYD REDLAYEVCR+SILKR+S+PVEI PI QSDLR+KGLYWRER +LESTEFSFSRFLTP LANY+GWA+F+DCDFLYLADIKEL ++IDDKYA+MCV HDYTPKETTKMDGAVQT+YPRKNWSSMVLYNCGHPKN+ LTPEVVN+QTGAFLHRFQWL+D EIGS+P +WNFLEGHNKVVE D  TFPKA+HYTRGGPWF+AWK+CEFA LWLNEM  Y++E K
Sbjct:    1 MGSNDGKIHPVTENDQKKVVKAFKIFVGYDTREDLAYEVCRYSILKRASIPVEICPIKQSDLRKKGLYWRERGQLESTEFSFSRFLTPALANYHGWAMFVDCDFLYLADIKELTDIIDDKYAVMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNRVLTPEVVNSQTGAFLHRFQWLDDSEIGSVPFVWNFLEGHNKVVEGDPSTFPKAVHYTRGGPWFDAWKHCEFAGLWLNEMESYLKEAK 252          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
CDI_ARATH8.987e-14979.22Protein CDI OS=Arabidopsis thaliana GN=CDI PE=2 SV... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094108 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078FTK4_BRANA1.322e-14375.98BnaA02g11850D protein OS=Brassica napus GN=BnaA02g... [more]
A0A067E2C7_CITSI2.344e-14382.38Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
C6TEE9_SOYBN2.522e-14376.63Putative uncharacterized protein OS=Glycine max PE... [more]
A0A0D3AN41_BRAOL2.737e-14376.77Uncharacterized protein OS=Brassica oleracea var. ... [more]
W9QMX8_9ROSA3.318e-14378.57Uncharacterized protein OS=Morus notabilis GN=L484... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 97..270
e-value: 5.3E-7
score: 28.6
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 49..271
NoneNo IPR availablePANTHERPTHR35105FAMILY NOT NAMEDcoord: 28..277
NoneNo IPR availablePANTHERPTHR35105:SF2SUBFAMILY NOT NAMEDcoord: 28..277
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..281
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094108 ID=g.barbadense_cottongen_reftransV1_0094108; Name=g.barbadense_cottongen_reftransV1_0094108; organism=Gossypium barbadense; type=contig; length=1949bp
CAGGAAAAAGCGAATAACTGGCTCCCTTTCCCTCGTTTCATTTCACCGCT
AAATCCTCGCCACAACACATTCATACAAAAATTTCTATTGAATCTAAAAT
AAAAATTGGATAATTTCGAAATTTTAGAGATTAATTTTCTGTTCTTTGAG
TTCCCATTTCTATAAGTAGTCTTCCAAGAGTCTACCTCTTCCCCTTTATT
CTTAATAAACTTTTAGTTCTCTTTCTTCTTTCTTCACTGTCAAGAATTTC
GAGATCCCGCGTTTTCTTCATTTTCTCAGGTATCTCTTTGTTTTGGTTTT
TGGGTCCTCTCTCTCTCTCTCTCTTTTTAGTTTAATTATTGTTTTTCTTT
TCTGGGTTTTAAGCGTATATTTTTGCTGATCTGATTTTTTTTCGTTAATG
GTGCCATGTTTTCTTTGAATTTATGGAATTTTCTGCTAAGTTGGGTTTTT
ATTTATTTGTTTGTTTGATGGATGTGTAGCATTGTGTTGACTGAATTTGA
ATCTCTGTTTCTATTGTTTTAGATTTACGTTTTTCTATGCTTTTCTTGGT
TCCTTTTTACATTAATGGATGCAATGTTAATTCAATAATAAGAGAAATCT
TAAAGTTTCCCTTTCTTGGTTTTGTTTGGCTTCCAAGAATCCACAAGAGA
AAAAAAACAAGTAAAAGAAAAAAAAAGAGTGATATTTCAGTGTGCCATTC
TTAACTAACTGATCCTAGAAAATTTCCCCTTTTTTTGGGGTTTATTTTAT
TATTTTTACTGAATTTTAAAAACTGTGCAGATCTGTGTTATAGTAGAAAA
AAACTGCTGCTATCAATGACTTTGGCTAATGGCGAAGCTCATCAAGTGAC
TAACAATGGCGATTTAAGCAAACCCTTCAAAATCTTTGTCGGTTACGATC
CGCGTGAAGATCTAGCCTATGAGGTCTGCCGCCATTCTATCTTGAAACGT
TCATCGGTTCCTGTCGAGATCACTCCCATTGTTCAATCAGATCTCCGGGA
AAAAGGCCTTTACTGGCGCGAGCGGAACAAGCTCGAGAGTACCGAGTTCT
CGTTTTCCCGGTTCCTGACTCCCTACTTGGCGAATTACAATGGTTGGGCG
CTGTTCATTGACTGTGATTTCCTTTACTTAGCTGATATAAAGGAATTAAT
GGAGTTGATTGATGATAAATATGCGATCATGTGCGTTCATCATGATTATA
CCCCGAAAGAGACCACGAAAATGGATGGTGCAGTGCAGACTTTGTATCCT
CGAAAGAATTGGTCCTCGATGGTGTTGTACAATTGCGGTCATCCGAAGAA
CAAGGGTCTGACTCCAGAAGTTGTAAACAATCAAACGGGCGCTTTTCTTC
ATAGGTTCCAGTGGCTCGAAGATGATGAAATCGGATCGATCCCGTCTATT
TGGAATTTCCTTGAAGGGCATAACAAGGTTGTCGAGAATGACTCAAAAAC
GTTTCCTAAAGCCATACATTATACTCGTGGAGGGCCATGGTTTGAGGCAT
GGAAGAATTGTGAGTTTGCCGATCTTTGGCTGAATGAGATGCATGACTAC
ATCGAAGAAACGAAGTTGAATGCAAGTTAATCAGAATCGGCATGGTGCAT
TGGTAATTTCCTAATTACATGTCAATTTATTCATGCTCCATTTTTATGTT
ATATTCATATATTGAATCTATCTTTGTGTATCCTAGTTCCAATTATGCTT
TAGAGTATATCAGGACGGCTATATATCGATATCGATGCCTCGTGTATGTA
GTTTTTCAATTTTTTTCATTTGTTTCAGTGACTACATATGGGAATATATG
ATCCTTGGAATGTTGGGCAGTATCTTTAGTTGATTAATGAAAGGTCTTTC
ATTTGTTTGTGAATTATGCTTGGTTGGTTGCTGCAAATATTTCTATTTTG
GGTTTCAATTGCTTCAAATAGCGGTCTCGGGATGGCATTCATTAGCGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans