g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094088
Unique Name	g.barbadense_cottongen_reftransV1_0094088
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2365

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0094088:1..2355 . Dt08:66632720..66639375 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THEM4 (Peptide chain release factor 2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=prfB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.244e-41
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = -2

Query:  274 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYL 723
             TSF+ V VMP + ED +DVE+  EDL I   RA G GGQ VNK E+AVRITHIPTG+ V C  ERSQL NK  A+  LKA+L  +  E+R  ++++I+G+     WG QIR+YVF PY +VKD RT  ET +I +VMDG++D FI++ L
Sbjct:  211 HTSFASVNVMPEI-EDDIDVEINPEDLRIDTYRASGAGGQYVNKTESAVRITHIPTGIVVTCQTERSQLQNKETAMKVLKARLYQLELEKRQKQLEEIQGELKDISWGNQIRSYVFQPYTMVKDHRTNVETGNIDAVMDGDIDIFIESEL 359

HSP 2 Score: 113.62 bits (283), Expect = 1.468e-25
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = -2

Query: 1279 ADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1809
             +S FW+D+ +A+E    ++    +I  + +    +E+    +    E+   DA  L+    +I D+ + +  FEL  +L+  +D   A +SI  GAGGT++QDWA MLLRMY RW E++ +  ++V+   GEEAGIKS  + ++G Y YGYL  E+G HR+VR SPF+A   R  +
Sbjct:   41 GESDFWNDQKRAKE----ISQNAQRIRKIIDDMVDIENKLEDLEAGLELLEEDATFLDTIKQLIDDIERKVKTFELELILNEKFDSSNAYLSIHPGAGGTESQDWASMLLRMYMRWAERRGFDVQIVDYQPGEEAGIKSAMLYIKGEYVYGYLKYERGVHRLVRISPFDANKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LISMF (Peptide chain release factor 2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=prfB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.915e-41
Identity = 77/151 (50.99%), Postives = 108/151 (71.52%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
             TSF  V+VMP L +D +++E+  EDL+I   RA G GGQ++N  ++AVR+THIP+G+ V C  ERSQL N+ +A+  LK KL    +E++  E+ +IRG+  +  WG QIR+YVFHPY +VKD RT +ET +I +VMDG+LD FI AYL+
Sbjct:  213 HTSFVSVDVMPEL-DDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDEFINAYLR 362

HSP 2 Score: 141.354 bits (355), Expect = 7.209e-35
Identity = 81/214 (37.85%), Postives = 124/214 (57.94%), Query Frame = -2

Query: 1273 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1914
            +R ++E  ++++ + R S  +  +E  +  LE +  D +FW+D+  AQ+ +      K+     +  + + E  E  + L +E    D  L EE    IK     +  FEL  +LS PYDK  A++ +  GAGGT++QDW  MLLRMY RW EK+ +K  +++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  + V
Sbjct:    6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE--EADEDLQEELEKDIKAYMATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LISIN (Peptide chain release factor 2 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=prfB PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 2.756e-41
Identity = 77/151 (50.99%), Postives = 108/151 (71.52%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
             TSF  V+VMP L +D +++E+  EDL+I   RA G GGQ++N  ++AVR+THIP+G+ V C  ERSQL N+ +A+  LK KL    +E++  E+ +IRG+  +  WG QIR+YVFHPY +VKD RT +ET +I +VMDG+LD FI AYL+
Sbjct:  213 HTSFVSVDVMPEL-DDEIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLR 362

HSP 2 Score: 138.272 bits (347), Expect = 7.291e-34
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = -2

Query: 1273 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1914
            +R ++E  ++++ + R S  +  +E  +  LE +  D +FW+D+  AQ+ +      K+     +  + + E  E  + L +E    D  L  E    IK     +  FEL  +LS PYDK  A++ +  GAGGT++QDW  MLLRMY RW EK+ +K  +++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  + V
Sbjct:    6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE--EADEDLQAELEKDIKAYVATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_BACSU (Peptide chain release factor 2 OS=Bacillus subtilis (strain 168) GN=prfB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 9.497e-41
Identity = 75/155 (48.39%), Postives = 105/155 (67.74%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
             TSF   EVMP    D +D+++  ED+++   RA G GGQ+VN  ++AVRITH+PT V V C  ERSQ+ N+ +A+  LKAKL     E++ +E+ +IRG+  +  WG QIR+YVFHPY +VKD RT  E  ++ +VMDG++D FI AYL+ K S
Sbjct:  213 HTSFVSCEVMPEF-NDEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNTEMGNVQAVMDGDIDTFIDAYLRSKLS 366

HSP 2 Score: 151.369 bits (381), Expect = 2.176e-38
Identity = 88/217 (40.55%), Postives = 129/217 (59.45%), Query Frame = -2

Query: 1264 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSVMFC 1914
            +R ++E  + R+ + R S  ++  E  +  L+ + AD  FW+D+ KAQ  +     +KD +N   +     E+ +   +L +E    D  L  E    +K L K  + FEL  LLS PYDK  A++ +  GAGGT++QDW  MLLRMYTRWGE++ +K   ++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  TS + C
Sbjct:    6 IRAELENMASRLADFRGSLDLESKEARIAELDEQMADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHDLLKEEPDTDLQL--ELEKELKSLTKEFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGERRGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH-TSFVSC 219

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LISMO (Peptide chain release factor 2 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=prfB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 9.685e-41
Identity = 77/151 (50.99%), Postives = 107/151 (70.86%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
             TSF  V+VMP L  D +++E+  EDL+I   RA G GGQ++N  ++AVR+THIP+G+ V C  ERSQL N+ +A+  LK KL    +E++  E+ +IRG+  +  WG QIR+YVFHPY +VKD RT +ET +I +VMDG+LD FI AYL+
Sbjct:  213 HTSFVSVDVMPELDGD-IEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLR 362

HSP 2 Score: 140.969 bits (354), Expect = 9.959e-35
Identity = 81/214 (37.85%), Postives = 124/214 (57.94%), Query Frame = -2

Query: 1273 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1914
            +R ++E  ++++ + R S  +  +E  +  LE +  D +FW+D+  AQ+ +      K+     +  + + E  E  + L +E    D  L EE    IK     +  FEL  +LS PYDK  A++ +  GAGGT++QDW  MLLRMY RW EK+ +K  +++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  + V
Sbjct:    6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE--EADEDLQEELEKDIKAYMATISAFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0A0LY01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652260 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 2.034e-115
Identity = 188/259 (72.59%), Postives = 219/259 (84.56%), Query Frame = -2

Query: 1279 SSPPPRFTSS---------VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2028
            +SP P F +S         V +AT +S + E ++T TREW MQDFY LRK+VE  SERV EIR SAG+ QL++EL  LESK AD+SFWDDR+KAQ+ L+A+TDVKDKI +L +FKT+VE+AETIV LTEEMDS+D  LLEEA  +IKDLNKALD+FEL++LLSGPYDKEGAVISI+AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKS TIE+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   36 TSPSPHFRTSLSTHSRFSLVPFATHESPVGEAIDTDTREWAMQDFYTLRKEVETTSERVEEIRNSAGLLQLDQELADLESKAADNSFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKLTEEMDSVDVGLLEEATKIIKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 294

HSP 2 Score: 311.997 bits (798), Expect = 1.316e-93
Identity = 149/159 (93.71%), Postives = 157/159 (98.74%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDIVSVMDGEL+ FIKAYLKYK+SI +S
Sbjct:  292 QTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDIVSVMDGELEPFIKAYLKYKYSIALS 450

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: Q6ZY50_CUCSA (Putative translation releasing factor 2 OS=Cucumis sativus GN=rf2 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.870e-114
Identity = 187/259 (72.20%), Postives = 218/259 (84.17%), Query Frame = -2

Query: 1279 SSPPPRFTSS---------VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2028
            +SP P F +S         V +AT +S + E ++T TREW  QDFY LRK+VE  SERV EIR SAG+ QL++EL  LESK AD+SFWDDR+KAQ+ L+A+TDVKDKI +L +FKT+VE+AETIV LTEEMDS+D  LLEEA  +IKDLNKALD+FEL++LLSGPYDKEGAVISI+AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKS TIE+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   36 TSPSPHFRTSLSTHSRFSLVPFATHESPVGEAIDTDTREWATQDFYTLRKEVETTSERVEEIRNSAGLLQLDQELADLESKAADNSFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKLTEEMDSVDVGLLEEATKIIKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 294

HSP 2 Score: 312.383 bits (799), Expect = 1.136e-93
Identity = 149/159 (93.71%), Postives = 157/159 (98.74%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDIVSVMDGEL+ FIKAYLKYK+SI +S
Sbjct:  292 QTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDIVSVMDGELEPFIKAYLKYKYSIALS 450

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: I1L681_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 1.751e-113
Identity = 205/303 (67.66%), Postives = 232/303 (76.57%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILS--SPPPRFTSSVTYATSDSQLS--EGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            ME +  PL    TIL PT   SL    + P       F +      +  S  SPPP     + +AT ++QLS  EG  T   +W +QDFY+LRKDVE+ S+RV EIR S+G+Q LE+EL  LE + ADSSFWD+R KAQETL  L DVKDKI LLN+FKT+VEDAETIV+LTEEMDSID  L EEA N+IK+LNK++DR+ELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQKYKTRVVEKS GEEAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEVVSQPLC---TILTPTRKHSLLIPQQIPNPSKHFPFLSFRATTLSTSSRFSPPP-----LLFATPENQLSIGEGENTDASDWALQDFYSLRKDVEIMSQRVGEIRESSGLQLLEQELGNLEEQAADSSFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRGLFEEASNLIKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQKYKTRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 295

HSP 2 Score: 303.138 bits (775), Expect = 3.759e-90
Identity = 142/159 (89.31%), Postives = 156/159 (98.11%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VE+PEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKI+ALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ET+DI SVMDGELD FIK+YLK+K+++++S
Sbjct:  293 QTSFSGVEVMPLLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDITSVMDGELDPFIKSYLKHKYNMSLS 451

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0B2RBJ2_GLYSO (Peptide chain release factor 2 OS=Glycine soja GN=glysoja_004976 PE=4 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 1.751e-113
Identity = 205/303 (67.66%), Postives = 232/303 (76.57%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILS--SPPPRFTSSVTYATSDSQLS--EGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            ME +  PL    TIL PT   SL    + P       F +      +  S  SPPP     + +AT ++QLS  EG  T   +W +QDFY+LRKDVE+ S+RV EIR S+G+Q LE+EL  LE + ADSSFWD+R KAQETL  L DVKDKI LLN+FKT+VEDAETIV+LTEEMDSID  L EEA N+IK+LNK++DR+ELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQKYKTRVVEKS GEEAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEVVSQPLC---TILTPTRKHSLLIPQQIPNPSKHFPFLSFRATTLSTSSRFSPPP-----LLFATPENQLSIGEGENTDASDWALQDFYSLRKDVEIMSQRVGEIRESSGLQLLEQELGNLEEQAADSSFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRGLFEEASNLIKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQKYKTRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 295

HSP 2 Score: 303.138 bits (775), Expect = 3.759e-90
Identity = 142/159 (89.31%), Postives = 156/159 (98.11%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VE+PEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKI+ALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ET+DI SVMDGELD FIK+YLK+K+++++S
Sbjct:  293 QTSFSGVEVMPLLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDITSVMDGELDPFIKSYLKHKYNMSLS 451

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A067EPJ0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0170091mg PE=4 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.547e-113
Identity = 185/216 (85.65%), Postives = 197/216 (91.20%), Query Frame = -2

Query: 1285 MQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ 1932
            MQDFY LRKDVE AS+RV EIR SAG+QQLEKEL  LE K ADSSFWD+RA+AQETL ALTDVKDKINLL +FKTK++DA TIV LTEEMDS DA LLEEA ++IK+LNKALD+FELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKSLGEEAGIKS  IEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ
Sbjct:    1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ 216

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: M4FEH3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra039494 PE=4 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.460e-112
Identity = 182/249 (73.09%), Postives = 214/249 (85.94%), Query Frame = -2

Query: 1279 SPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2025
            S   R TS +++AT +S  S   E+ T EWVMQDFY LRKDVE+AS RV EIR SAG++QL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK++DRFELTQLLSGPYDKEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   45 SSTSRLTSPISFATQES--SNLSESDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLEQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSVDRFELTQLLSGPYDKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 291

HSP 2 Score: 283.108 bits (723), Expect = 8.626e-83
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  289 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 447

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A078JNZ8_BRANA (BnaAnng27520D protein OS=Brassica napus GN=BnaAnng27520D PE=4 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.807e-111
Identity = 181/249 (72.69%), Postives = 214/249 (85.94%), Query Frame = -2

Query: 1279 SPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2025
            S   R TS +++AT +S  S   E+ T EWVMQDFY LRKDVE+AS RV EIR SAG++QL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK++DRFELTQLLSGPYDKEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E++GRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   45 SSTSRLTSPISFATQES--SNLSESDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLEQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSVDRFELTQLLSGPYDKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIDGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 291

HSP 2 Score: 283.108 bits (723), Expect = 9.179e-83
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  289 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 447

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A078EZU1_BRANA (BnaC06g12020D protein OS=Brassica napus GN=BnaC06g12020D PE=4 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 1.096e-110
Identity = 180/238 (75.63%), Postives = 209/238 (87.82%), Query Frame = -2

Query: 1279 YATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1992
            +AT +S LSE   + T EWVMQDFY LRKDVE+AS RV EIR SAG+QQL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEM+S D +LLEEA+ +IKDLNK+LDRFELTQLLSGPY+KEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   55 FATQESNLSE---SDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLQQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMESTDVSLLEEAMAIIKDLNKSLDRFELTQLLSGPYNKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 289

HSP 2 Score: 282.722 bits (722), Expect = 1.209e-82
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  287 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0D3CSR1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=HCF109 PE=4 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 1.096e-110
Identity = 180/238 (75.63%), Postives = 209/238 (87.82%), Query Frame = -2

Query: 1279 YATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1992
            +AT +S LSE   + T EWVMQDFY LRKDVE+AS RV EIR SAG+QQL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEM+S D +LLEEA+ +IKDLNK+LDRFELTQLLSGPY+KEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   55 FATQESNLSE---SDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLQQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMESTDVSLLEEAMAIIKDLNKSLDRFELTQLLSGPYNKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 289

HSP 2 Score: 282.722 bits (722), Expect = 1.209e-82
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  287 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A087GL93_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G008900 PE=4 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 6.831e-110
Identity = 177/251 (70.52%), Postives = 211/251 (84.06%), Query Frame = -2

Query: 1279 LSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2031
             SS   R +S + +A  +S LS   E+ T EWVMQDFY LRKDVE+A+ RV EIR SAG+QQ+E ++  LESK +D+SFWDDRA+AQETL +L D+KD+  LL++FK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFE+TQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGE Q+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   42 FSSSTCRLSSPILFAAQESNLSVSDESDTSEWVMQDFYTLRKDVEIATARVEEIRASAGLQQIELDIANLESKASDTSFWDDRAQAQETLSSLNDLKDRFRLLSDFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFEITQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGENQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 292

HSP 2 Score: 285.419 bits (729), Expect = 1.318e-83
Identity = 132/159 (83.02%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + LSRLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  290 QTSFSGVEVMPLLPEEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLSRLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 448

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RF2_THEM4	1.244e-41	53.33	Peptide chain release factor 2 OS=Thermosipho mela...	[more]
RF2_LISMF	1.915e-41	50.99	Peptide chain release factor 2 OS=Listeria monocyt...	[more]
RF2_LISIN	2.756e-41	50.99	Peptide chain release factor 2 OS=Listeria innocua...	[more]
RF2_BACSU	9.497e-41	48.39	Peptide chain release factor 2 OS=Bacillus subtili...	[more]
RF2_LISMO	9.685e-41	50.99	Peptide chain release factor 2 OS=Listeria monocyt...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0A0LY01_CUCSA	2.034e-115	72.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
Q6ZY50_CUCSA	1.870e-114	72.20	Putative translation releasing factor 2 OS=Cucumis...	[more]
I1L681_SOYBN	1.751e-113	67.66	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2RBJ2_GLYSO	1.751e-113	67.66	Peptide chain release factor 2 OS=Glycine soja GN=...	[more]
A0A067EPJ0_CITSI	2.547e-113	85.65	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
M4FEH3_BRARP	4.460e-112	73.09	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]
A0A078JNZ8_BRANA	1.807e-111	72.69	BnaAnng27520D protein OS=Brassica napus GN=BnaAnng...	[more]
A0A078EZU1_BRANA	1.096e-110	75.63	BnaC06g12020D protein OS=Brassica napus GN=BnaC06g...	[more]
A0A0D3CSR1_BRAOL	1.096e-110	75.63	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
A0A087GL93_ARAAL	6.831e-110	70.52	Uncharacterized protein OS=Arabis alpina GN=AALP_A...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..210
None	No IPR available	GENE3D	1.20.58.410		coord: 98..209 e-value: 6.4E-15 score: 54.6
None	No IPR available	PANTHER	PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	coord: 40..308
None	No IPR available	PANTHER	PTHR11075:SF46	PROTEIN HIGH CHLOROPHYLL FLUORESCENT 109	coord: 40..308
None	No IPR available	SUPERFAMILY	75620	Release factor	coord: 122..309
IPR005139	Peptide chain release factor	SMART	SM00937	PCRF_a_2	coord: 177..289 e-value: 2.3E-44 score: 163.4
IPR005139	Peptide chain release factor	PFAM	PF03462	PCRF	coord: 123..311 e-value: 4.1E-49 score: 166.9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094088 ID=g.barbadense_cottongen_reftransV1_0094088; Name=g.barbadense_cottongen_reftransV1_0094088; organism=Gossypium barbadense; type=contig; length=2365bp
AACAAATTAAATAAGATTCATATGGTACTATTTGAATGGTTAGCAGATAA
ATGGACTCGGATAACAAATAAAATAAGTCGTTCCGAATATTTAAAAAATT
ACAAATATCCGAGCCGCTGTTATTCTTAAATAACTCAAAGAATTTGAGCC
TACATACACAAAAAGGGTATCATATATAAGTTAATCATGAATCACTAAAC
TCTTTAATTAGGCCCCTGTTGTAGTTGCAGTCGCAGTTGCAGTTGCAGAT
ACATTGATACTGTGTTTATATTTAAGGTAAGCTTTGATGAAGGCATCCAA
TTCACCATCCATCACCGATACAATATCCGAAGTCTCGAACCCAGTTCGAA
CATCTTTCACTAGTTTGTAAGGATGGAATACATAGTTTCGTATCTGCTGC
CCCCACTCGGCCTTCACTGCATCTCCCCTTATTTGCTTGATTTCGGATGC
ACGTTGCTCCTCGGCTATCACTAATAACTTGGCTTTTAATCTGCTAAGAG
CCTTGATCTTGTTTGCTAGCTGCGACCTCTCTTCTGTGCAACGAACGGTA
ACACCAGTCGGGATGTGAGTAATCCGAACGGCGGTTTCAACTTTGTTCAC
ATTCTGACCTCCTTTCCCTCCTGCCCTTGAAAATGAAATTTCAAGGTCTT
CCTCAGGTAATTCAACATCTACCGAATCTTCAGGGAGAAGAGGCATTACT
TCAACACCGGAAAAGCTTGTCTGTATATAATCCAATGTAAGCAAATAAAT
GGAGGCAAGGGTTCAATGTGAATGATAAAAGATTCAACAACAACCTGATT
TCTAAACCAAAGGTCTCTATGAGGTTATCGGAAGACAATGATTCTTTTCT
CAAAGGAAAAAGAATAGAGAGGGTTCTGTTCGGAAGAGGATACCAGTCAA
ACTGGTATGAAATAGCATAGCTTTTCTTGAAAGAATTTACAGAAAGCATG
TTGAACTTCCATCAACCGAGGCAAAAAAAACTTCCATCACGTATGCAACA
AGTCTTTCAGGCAAAGTATCAAAACAACCATCTCGTGGCAGCTATTACCG
TGTACATGATCTTCCTAGTGCAACAAATCCACTCACAGTATGGATGCTTA
GAAGCATAATGCAAACAAGTAAAAGATGCAGGAAAATTAACCACTTATTA
TAGAAATTTGAAGCAAAAACGAATGTTGGTCATTGAGATAATCTAATTAT
TGGATAAGAATGGTTAAAAACAATTACCACAAAAGAAGAGAATGAGTCTT
TTCTAAACGTTCAACAAAACATAACAGAAGTTACCTGACGAAGACCTTTA
GCATTGAAAGGAGACTGTCGTACTATACGATGAGTCCCTTTCTCTCCAGA
TAGATAGCCATAAGCATATCTGCCTTCAACTTCAATTGTGACCGACTTAA
TCCCGGCTTCCTCTCCCAATGACTTTTCAACAACCCTTGTCTTATATTTC
TGTTTCTCTCCCCATCTCGTGTACATCCTGAGAAGCATGTCAGCCCAGTC
CTGTGCATCGGTGCCTCCAGCACCAGCAGCTATAGAGATGACTGCACCTT
CTTTGTCATATGGACCAGAAAGAAGTTGAGTCAACTCGAATCTGTCCAAT
GCCTTATTTAGATCTTTAATCACATTGACAGCCTCTTCTAGAAGTGCAGC
ATCTATGGAGTCCATCTCCTCTGTTAGATTAACTATAGTTTCAGCATCTT
CAACCTTCGTTTTAAATTCATTGAGTAAATTTATTTTGTCTTTGACATCA
GTCAGTGCCAAAAGAGTTTCTTGAGCTTTGGCACGATCATCCCAAAATGA
GCTATCAGCTGTTTTTGATTCCAGAACCACGAGTTCCTTTTCTAATTGCT
GCATACCAGCAGATGTTCTAATTTCATTAACGCGTTCTGAGGCCATTTCA
ACATCTTTCCTTAGAGCATAAAAATCTTGCATTACCCATTCTCTTGTACT
GGTTTCTACTCCTTCACTCAATTGGCTATCCGAAGTTGCATATGTAACAG
AAGAAGTGAAACGGGGAGGAGGGGAAGAGAGAATTGCAGAAAAAGGAAAT
GAAGTGGTCGTGAAATGAGTCAGTGATAGCAAAAATGGAGCTTTGTTGAC
GTTCGACAAAGAGAATGGATTTGTGGGTTTTAGAATGGTGGGTGAGCTTA
AAAGAGGGTTTAAAATGGCTTCCATTTTGGGGTTATCGAGGAAAATAGAA
TTTAGCAGTGGAATGTCATCACTTGCTTTGTTTCAACGGTGGTATGTTAG
AATCGCAAATGGATAGAGAAAGAGAGGGAGCAAGACCACCCCTGTAAGCT
CCATAACGGTAAAAGGCCGGTTTCCGGTTGCTTCTAATTAGCTTCTTCTT
TTTTTTTGGTGTAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005139	PCRF

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

Search form

g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

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