g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094088
Unique Name	g.barbadense_cottongen_reftransV1_0094088
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2365

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0094088:1..2355 . Dt08:66632720..66639375 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THEM4 (Peptide chain release factor 2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=prfB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.244e-41
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = -2

Query:  274 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYL 723
             TSF+ V VMP + ED +DVE+  EDL I   RA G GGQ VNK E+AVRITHIPTG+ V C  ERSQL NK  A+  LKA+L  +  E+R  ++++I+G+     WG QIR+YVF PY +VKD RT  ET +I +VMDG++D FI++ L
Sbjct:  211 HTSFASVNVMPEI-EDDIDVEINPEDLRIDTYRASGAGGQYVNKTESAVRITHIPTGIVVTCQTERSQLQNKETAMKVLKARLYQLELEKRQKQLEEIQGELKDISWGNQIRSYVFQPYTMVKDHRTNVETGNIDAVMDGDIDIFIESEL 359

HSP 2 Score: 113.62 bits (283), Expect = 1.468e-25
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = -2

Query: 1279 ADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1809
             +S FW+D+ +A+E    ++    +I  + +    +E+    +    E+   DA  L+    +I D+ + +  FEL  +L+  +D   A +SI  GAGGT++QDWA MLLRMY RW E++ +  ++V+   GEEAGIKS  + ++G Y YGYL  E+G HR+VR SPF+A   R  +
Sbjct:   41 GESDFWNDQKRAKE----ISQNAQRIRKIIDDMVDIENKLEDLEAGLELLEEDATFLDTIKQLIDDIERKVKTFELELILNEKFDSSNAYLSIHPGAGGTESQDWASMLLRMYMRWAERRGFDVQIVDYQPGEEAGIKSAMLYIKGEYVYGYLKYERGVHRLVRISPFDANKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LISMF (Peptide chain release factor 2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=prfB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.915e-41
Identity = 77/151 (50.99%), Postives = 108/151 (71.52%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
             TSF  V+VMP L +D +++E+  EDL+I   RA G GGQ++N  ++AVR+THIP+G+ V C  ERSQL N+ +A+  LK KL    +E++  E+ +IRG+  +  WG QIR+YVFHPY +VKD RT +ET +I +VMDG+LD FI AYL+
Sbjct:  213 HTSFVSVDVMPEL-DDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDEFINAYLR 362

HSP 2 Score: 141.354 bits (355), Expect = 7.209e-35
Identity = 81/214 (37.85%), Postives = 124/214 (57.94%), Query Frame = -2

Query: 1273 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1914
            +R ++E  ++++ + R S  +  +E  +  LE +  D +FW+D+  AQ+ +      K+     +  + + E  E  + L +E    D  L EE    IK     +  FEL  +LS PYDK  A++ +  GAGGT++QDW  MLLRMY RW EK+ +K  +++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  + V
Sbjct:    6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE--EADEDLQEELEKDIKAYMATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LISIN (Peptide chain release factor 2 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=prfB PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 2.756e-41
Identity = 77/151 (50.99%), Postives = 108/151 (71.52%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
             TSF  V+VMP L +D +++E+  EDL+I   RA G GGQ++N  ++AVR+THIP+G+ V C  ERSQL N+ +A+  LK KL    +E++  E+ +IRG+  +  WG QIR+YVFHPY +VKD RT +ET +I +VMDG+LD FI AYL+
Sbjct:  213 HTSFVSVDVMPEL-DDEIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLR 362

HSP 2 Score: 138.272 bits (347), Expect = 7.291e-34
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = -2

Query: 1273 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1914
            +R ++E  ++++ + R S  +  +E  +  LE +  D +FW+D+  AQ+ +      K+     +  + + E  E  + L +E    D  L  E    IK     +  FEL  +LS PYDK  A++ +  GAGGT++QDW  MLLRMY RW EK+ +K  +++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  + V
Sbjct:    6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE--EADEDLQAELEKDIKAYVATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 217

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_BACSU (Peptide chain release factor 2 OS=Bacillus subtilis (strain 168) GN=prfB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 9.497e-41
Identity = 75/155 (48.39%), Postives = 105/155 (67.74%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
             TSF   EVMP    D +D+++  ED+++   RA G GGQ+VN  ++AVRITH+PT V V C  ERSQ+ N+ +A+  LKAKL     E++ +E+ +IRG+  +  WG QIR+YVFHPY +VKD RT  E  ++ +VMDG++D FI AYL+ K S
Sbjct:  213 HTSFVSCEVMPEF-NDEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNTEMGNVQAVMDGDIDTFIDAYLRSKLS 366

HSP 2 Score: 151.369 bits (381), Expect = 2.176e-38
Identity = 88/217 (40.55%), Postives = 129/217 (59.45%), Query Frame = -2

Query: 1264 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSVMFC 1914
            +R ++E  + R+ + R S  ++  E  +  L+ + AD  FW+D+ KAQ  +     +KD +N   +     E+ +   +L +E    D  L  E    +K L K  + FEL  LLS PYDK  A++ +  GAGGT++QDW  MLLRMYTRWGE++ +K   ++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  TS + C
Sbjct:    6 IRAELENMASRLADFRGSLDLESKEARIAELDEQMADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHDLLKEEPDTDLQL--ELEKELKSLTKEFNEFELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGERRGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH-TSFVSC 219

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LISMO (Peptide chain release factor 2 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=prfB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 9.685e-41
Identity = 77/151 (50.99%), Postives = 107/151 (70.86%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
             TSF  V+VMP L  D +++E+  EDL+I   RA G GGQ++N  ++AVR+THIP+G+ V C  ERSQL N+ +A+  LK KL    +E++  E+ +IRG+  +  WG QIR+YVFHPY +VKD RT +ET +I +VMDG+LD FI AYL+
Sbjct:  213 HTSFVSVDVMPELDGD-IEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLR 362

HSP 2 Score: 140.969 bits (354), Expect = 9.959e-35
Identity = 81/214 (37.85%), Postives = 124/214 (57.94%), Query Frame = -2

Query: 1273 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1914
            +R ++E  ++++ + R S  +  +E  +  LE +  D +FW+D+  AQ+ +      K+     +  + + E  E  + L +E    D  L EE    IK     +  FEL  +LS PYDK  A++ +  GAGGT++QDW  MLLRMY RW EK+ +K  +++   G+EAGIKSVT+ ++G  AYGYL  EKG HR+VR SPF++ G R  + V
Sbjct:    6 IRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE--EADEDLQEELEKDIKAYMATISAFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0D2R4L4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G264100 PE=4 SV=1)

HSP 1 Score: 530.406 bits (1365), Expect = 1.380e-177
Identity = 292/299 (97.66%), Postives = 295/299 (98.66%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            M+AILNPLLSSPTILKPTNPFSLSNVNKAPFLLSLTHFTTTSFPFSAILS+PPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVE ASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVI DLNKALDRFELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MDAILNPLLSSPTILKPTNPFSLSNVNKAPFLLSLTHFTTTSFPFSAILSTPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVETASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVINDLNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 299

HSP 2 Score: 325.094 bits (832), Expect = 2.309e-98
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = -2

Query:  253 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSIN 723
            QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKAL+RLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSIN
Sbjct:  297 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALTRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSIN 453

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0B0N7A0_GOSAR (Peptide chain release factor 2 OS=Gossypium arboreum GN=F383_11471 PE=4 SV=1)

HSP 1 Score: 527.324 bits (1357), Expect = 2.360e-176
Identity = 292/299 (97.66%), Postives = 294/299 (98.33%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            MEAILNPLLSS TILKP NPF LSNVNKAPFLLSLTHFTTTSFPFSAILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEGAVISIAAGAGGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKS TIEVEGR+AYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEAILNPLLSSSTILKPANPFYLSNVNKAPFLLSLTHFTTTSFPFSAILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEGAVISIAAGAGGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSATIEVEGRFAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 299

HSP 2 Score: 327.791 bits (839), Expect = 2.442e-99
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE+SVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS
Sbjct:  297 QTSFSGVEVMPLLPEESVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 455

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A061F5D6_THECC (High chlorophyll fluorescent 109 isoform 2 OS=Theobroma cacao GN=TCM_025105 PE=4 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 1.107e-145
Identity = 244/302 (80.79%), Postives = 261/302 (86.42%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSN---VNKAXXXXXXXXXXXXXXXXSAILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            MEAIL PLLSS T++KP  P S S+   +NK P LLSL    T +      + S P RFTSSV YAT +SQL+EGV+T+TREWVMQDFYALRKDVE ASERV EI  S G+Q LEKEL  LESK ADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIV LTEEMD+IDAALLEEAV+VIK+LNKALDRFELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQKYKT+VVEKSLGEEAG+KS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEAILKPLLSSTTMIKPPKPSSFSSYTSINKVPVLLSLAPLLTATSFSFTAILSAPSRFTSSVIYATPESQLTEGVDTNTREWVMQDFYALRKDVETASERVEEIIASTGLQLLEKELADLESKAADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVKLTEEMDAIDAALLEEAVSVIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQKYKTKVVEKSLGEEAGLKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 302

HSP 2 Score: 319.701 bits (818), Expect = 2.306e-96
Identity = 151/159 (94.97%), Postives = 158/159 (99.37%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSF+GVEVMPLLPE+SVDVELPEEDLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDI SVMDGELDAFIKAYLK+K+S++VS
Sbjct:  300 QTSFAGVEVMPLLPEESVDVELPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIASVMDGELDAFIKAYLKHKYSMSVS 458

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A061EYJ6_THECC (High chlorophyll fluorescent 109 isoform 1 OS=Theobroma cacao GN=TCM_025105 PE=4 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 6.369e-138
Identity = 244/334 (73.05%), Postives = 261/334 (78.14%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSN---VNKAXXXXXXXXXXXXXXXXSAILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQ--------------------------------DFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            MEAIL PLLSS T++KP  P S S+   +NK P LLSL    T +      + S P RFTSSV YAT +SQL+EGV+T+TREWVMQ                                DFYALRKDVE ASERV EI  S G+Q LEKEL  LESK ADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIV LTEEMD+IDAALLEEAV+VIK+LNKALDRFELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQKYKT+VVEKSLGEEAG+KS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEAILKPLLSSTTMIKPPKPSSFSSYTSINKVPVLLSLAPLLTATSFSFTAILSAPSRFTSSVIYATPESQLTEGVDTNTREWVMQGSEAVGMLPWFYGHYHCFEVVGFNANKVLDFVDFYALRKDVETASERVEEIIASTGLQLLEKELADLESKAADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVKLTEEMDAIDAALLEEAVSVIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQKYKTKVVEKSLGEEAGLKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 334

HSP 2 Score: 310.842 bits (795), Expect = 3.768e-92
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
            QTSF+GVEVMPLLPE+SVDVELPEEDLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDI SVMDGELDAFIKAYLK+K+S
Sbjct:  332 QTSFAGVEVMPLLPEESVDVELPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIASVMDGELDAFIKAYLKHKYS 486

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: B9RM42_RICCO (Peptide chain release factor, putative OS=Ricinus communis GN=RCOM_1077620 PE=4 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 2.876e-124
Identity = 201/243 (82.72%), Postives = 218/243 (89.71%), Query Frame = -2

Query: 1279 TSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2007
            +SSV YA  DSQL+ GV+T TREW MQDFY+LR+DVE ASERV EIRTSAG+QQLE+E+  LESK A++SFWDDRA AQETLLALTDVKDKI LL EFKTKVEDAETIV LTEEMDSID  LLEEA ++IK+LNK+L+RFELTQLLSGPYDKE AVISI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKS  IEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:   58 SSSVIYAAPDSQLNVGVDTETREWAMQDFYSLRRDVEAASERVEEIRTSAGLQQLEQEVTNLESKAANTSFWDDRATAQETLLALTDVKDKIKLLTEFKTKVEDAETIVKLTEEMDSIDTGLLEEASSIIKELNKSLERFELTQLLSGPYDKESAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSAMIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 300

HSP 2 Score: 312.768 bits (800), Expect = 9.498e-94
Identity = 147/159 (92.45%), Postives = 156/159 (98.11%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSG+EVMPLLPE+S+DVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIA EQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSD+ SVMDGEL+AFIKAYLKYK+S+ +S
Sbjct:  298 QTSFSGIEVMPLLPEESMDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDVTSVMDGELEAFIKAYLKYKYSMTLS 456

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: W9RF34_9ROSA (Peptide chain release factor 2 OS=Morus notabilis GN=L484_005584 PE=4 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 1.345e-122
Identity = 202/248 (81.45%), Postives = 215/248 (86.69%), Query Frame = -2

Query: 1279 PPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2022
            P  RF   V YAT + Q+   V    REW MQDFY+LRKDVE  SERV EIR SAG+QQLE+EL VLESK ADSSFWDDRAKAQETLLALTDVKDKI LL+EFK KVEDAETI+ LTEEMDSID ALLEEA  +IK+LNKALDRFELT+LLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   53 PLSRFPPYVLYATQERQVGTEVNNDVREWAMQDFYSLRKDVETVSERVEEIRASAGLQQLEEELAVLESKAADSSFWDDRAKAQETLLALTDVKDKIKLLSEFKAKVEDAETIIMLTEEMDSIDTALLEEANTIIKELNKALDRFELTELLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 300

HSP 2 Score: 306.605 bits (784), Expect = 1.998e-91
Identity = 144/159 (90.57%), Postives = 156/159 (98.11%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE+S+++E+P+EDL+ISFSRAGGKGGQNVNKVETAVRITHIPTGVT+RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDIVSVMDGEL+ FIKA+LKYK+S+ VS
Sbjct:  298 QTSFSGVEVMPLLPEESINIEIPDEDLDISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGLETSDIVSVMDGELEPFIKAFLKYKYSMAVS 456

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: D7SPM1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00870 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.105e-121
Identity = 200/248 (80.65%), Postives = 215/248 (86.69%), Query Frame = -2

Query: 1279 PPRFTSSVTYATSDSQLSEGVETSTR-EWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2019
            P RF+  V +A+ +SQL   V T T  EW MQDFY LR+DVE  SER  EIR SAG+QQLE+EL  LE K ADSSFWDDRAKAQETLLALTDVKDKI LL +FKT+VEDAETIV LTEEMDSID  LLEEA N+IK+LNKALDRFELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS+GEEAGIKS TIE+EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:   45 PSRFSPHVLFASPESQLDMEVTTETSSEWAMQDFYTLRRDVEAISERAEEIRASAGLQQLEEELAALEMKAADSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKLTEEMDSIDTGLLEEAANIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 292

HSP 2 Score: 307.76 bits (787), Expect = 4.884e-92
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE+S+DVE+PEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDI SVMDGEL+ FIKAYLK+K S+ +S
Sbjct:  290 QTSFSGVEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPFIKAYLKFKFSMTLS 448

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A067JVR4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18056 PE=4 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 2.128e-119
Identity = 211/302 (69.87%), Postives = 236/302 (78.15%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILSS---PPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            ME ++ PL SS T+L       LS+  K+  LLS+    ++        SS      R  SS+ YA  ++QL  GV+T T EW MQDFY+LR+DVE ASERV EI  SAGMQ L++EL  LE+K ADSS WDDRA+AQE L ALTDVKDKI LL EFKT VEDAETIV LTEEMDS DA LLEEA  ++K+LNK+LDRFELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKSVTIE+EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEGLVCPLYSSNTVLASAK---LSHNIKSSVLLSVNPSVSSPHRTILAFSSVLATSSRLPSSIIYAAPENQLDVGVDTETGEWAMQDFYSLRRDVEAASERVEEIIASAGMQLLQQELAGLEAKAADSSLWDDRARAQEILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 299

HSP 2 Score: 309.686 bits (792), Expect = 1.406e-92
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE+S+DVE+PEEDLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIA EQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDI SVMDGEL+ FIKAYLKYK+S+ +S
Sbjct:  297 QTSFSGVEVMPLLPEESMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPFIKAYLKYKYSMAMS 455

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: B9HHX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07570g PE=4 SV=2)

HSP 1 Score: 375.17 bits (962), Expect = 1.657e-117
Identity = 199/257 (77.43%), Postives = 217/257 (84.44%), Query Frame = -2

Query: 1279 LSSPPPRFTSSVTYATSDSQLSEGVETST------REWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2031
            L S P R  SSV YAT DSQLS G +T T      REW MQDFY+LRKDVE AS+RV E+R S+G+  LE+EL  LESK ADSS WDDRAKAQETLLALTDVKDKI LL EFKTKVE+AETIV LTEEMDS DA  LEEA  +IK+LNKALD++ELTQLLSGPYDKEGAV+SI AGAGGTDAQDWADMLLRMY RWGEKQ+YKT+VVE S GEEAGIKS T+EVEGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   49 LFSAPSRSFSSVIYATPDSQLSVGADTDTDTDTDTREWAMQDFYSLRKDVETASQRVEEMRASSGLHLLEQELADLESKAADSSLWDDRAKAQETLLALTDVKDKIKLLAEFKTKVEEAETIVKLTEEMDSTDAGFLEEATGIIKELNKALDKYELTQLLSGPYDKEGAVLSITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTKVVESSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 305

HSP 2 Score: 306.99 bits (785), Expect = 1.350e-91
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE+S+DVELPEEDLEIS SRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQL+NKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDGELD FI+AYLK+K+S+ +S
Sbjct:  303 QTSFSGVEVMPLLPEESMDVELPEEDLEISTSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLSNKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIASVMDGELDPFIRAYLKHKYSMTLS 461

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A059D2I3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01462 PE=4 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.854e-116
Identity = 191/252 (75.79%), Postives = 217/252 (86.11%), Query Frame = -2

Query: 1279 ILSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2034
            + SS   R   SV  + S+ QLS+ VE  + EW MQDFY+LR++VE AS RV +IR SAG+QQLEKEL  LE K +D+SFWDDRAKAQ+TLLALTDVKDKI LL++FKT+VE+AET+V LTEEMDS D  LLEEA  +IK+LNKALDRFELT+LLSGPYDKEGAV+SI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS+GEEAGIKS T+EVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:   38 VPSSSRFRSVGSVVCSASNDQLSQSVEADSSEWAMQDFYSLRREVEAASARVVDIRASAGLQQLEKELADLELKASDASFWDDRAKAQQTLLALTDVKDKIRLLSDFKTQVEEAETVVMLTEEMDSKDTGLLEEAAGIIKELNKALDRFELTELLSGPYDKEGAVVSITAGAGGTDAQDWADMLLRMYARWGEKQRYKTRVVEKSMGEEAGIKSATLEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 289

HSP 2 Score: 305.449 bits (781), Expect = 4.162e-91
Identity = 144/159 (90.57%), Postives = 154/159 (96.86%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE+S++VE+PEEDLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVT+RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGD VKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDI SVMDGELD FIK YLKYK+S++ S
Sbjct:  287 QTSFSGVEVMPLLPEESLNVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDISSVMDGELDPFIKTYLKYKYSMSQS 445

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RF2_THEM4	1.244e-41	53.33	Peptide chain release factor 2 OS=Thermosipho mela...	[more]
RF2_LISMF	1.915e-41	50.99	Peptide chain release factor 2 OS=Listeria monocyt...	[more]
RF2_LISIN	2.756e-41	50.99	Peptide chain release factor 2 OS=Listeria innocua...	[more]
RF2_BACSU	9.497e-41	48.39	Peptide chain release factor 2 OS=Bacillus subtili...	[more]
RF2_LISMO	9.685e-41	50.99	Peptide chain release factor 2 OS=Listeria monocyt...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2R4L4_GOSRA	1.380e-177	97.66	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0N7A0_GOSAR	2.360e-176	97.66	Peptide chain release factor 2 OS=Gossypium arbore...	[more]
A0A061F5D6_THECC	1.107e-145	80.79	High chlorophyll fluorescent 109 isoform 2 OS=Theo...	[more]
A0A061EYJ6_THECC	6.369e-138	73.05	High chlorophyll fluorescent 109 isoform 1 OS=Theo...	[more]
B9RM42_RICCO	2.876e-124	82.72	Peptide chain release factor, putative OS=Ricinus ...	[more]
W9RF34_9ROSA	1.345e-122	81.45	Peptide chain release factor 2 OS=Morus notabilis ...	[more]
D7SPM1_VITVI	2.105e-121	80.65	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A067JVR4_JATCU	2.128e-119	69.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9HHX5_POPTR	1.657e-117	77.43	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A059D2I3_EUCGR	4.854e-116	75.79	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..210
None	No IPR available	GENE3D	1.20.58.410		coord: 98..209 e-value: 6.4E-15 score: 54.6
None	No IPR available	PANTHER	PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	coord: 40..308
None	No IPR available	PANTHER	PTHR11075:SF46	PROTEIN HIGH CHLOROPHYLL FLUORESCENT 109	coord: 40..308
None	No IPR available	SUPERFAMILY	75620	Release factor	coord: 122..309
IPR005139	Peptide chain release factor	SMART	SM00937	PCRF_a_2	coord: 177..289 e-value: 2.3E-44 score: 163.4
IPR005139	Peptide chain release factor	PFAM	PF03462	PCRF	coord: 123..311 e-value: 4.1E-49 score: 166.9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094088 ID=g.barbadense_cottongen_reftransV1_0094088; Name=g.barbadense_cottongen_reftransV1_0094088; organism=Gossypium barbadense; type=contig; length=2365bp
AACAAATTAAATAAGATTCATATGGTACTATTTGAATGGTTAGCAGATAA
ATGGACTCGGATAACAAATAAAATAAGTCGTTCCGAATATTTAAAAAATT
ACAAATATCCGAGCCGCTGTTATTCTTAAATAACTCAAAGAATTTGAGCC
TACATACACAAAAAGGGTATCATATATAAGTTAATCATGAATCACTAAAC
TCTTTAATTAGGCCCCTGTTGTAGTTGCAGTCGCAGTTGCAGTTGCAGAT
ACATTGATACTGTGTTTATATTTAAGGTAAGCTTTGATGAAGGCATCCAA
TTCACCATCCATCACCGATACAATATCCGAAGTCTCGAACCCAGTTCGAA
CATCTTTCACTAGTTTGTAAGGATGGAATACATAGTTTCGTATCTGCTGC
CCCCACTCGGCCTTCACTGCATCTCCCCTTATTTGCTTGATTTCGGATGC
ACGTTGCTCCTCGGCTATCACTAATAACTTGGCTTTTAATCTGCTAAGAG
CCTTGATCTTGTTTGCTAGCTGCGACCTCTCTTCTGTGCAACGAACGGTA
ACACCAGTCGGGATGTGAGTAATCCGAACGGCGGTTTCAACTTTGTTCAC
ATTCTGACCTCCTTTCCCTCCTGCCCTTGAAAATGAAATTTCAAGGTCTT
CCTCAGGTAATTCAACATCTACCGAATCTTCAGGGAGAAGAGGCATTACT
TCAACACCGGAAAAGCTTGTCTGTATATAATCCAATGTAAGCAAATAAAT
GGAGGCAAGGGTTCAATGTGAATGATAAAAGATTCAACAACAACCTGATT
TCTAAACCAAAGGTCTCTATGAGGTTATCGGAAGACAATGATTCTTTTCT
CAAAGGAAAAAGAATAGAGAGGGTTCTGTTCGGAAGAGGATACCAGTCAA
ACTGGTATGAAATAGCATAGCTTTTCTTGAAAGAATTTACAGAAAGCATG
TTGAACTTCCATCAACCGAGGCAAAAAAAACTTCCATCACGTATGCAACA
AGTCTTTCAGGCAAAGTATCAAAACAACCATCTCGTGGCAGCTATTACCG
TGTACATGATCTTCCTAGTGCAACAAATCCACTCACAGTATGGATGCTTA
GAAGCATAATGCAAACAAGTAAAAGATGCAGGAAAATTAACCACTTATTA
TAGAAATTTGAAGCAAAAACGAATGTTGGTCATTGAGATAATCTAATTAT
TGGATAAGAATGGTTAAAAACAATTACCACAAAAGAAGAGAATGAGTCTT
TTCTAAACGTTCAACAAAACATAACAGAAGTTACCTGACGAAGACCTTTA
GCATTGAAAGGAGACTGTCGTACTATACGATGAGTCCCTTTCTCTCCAGA
TAGATAGCCATAAGCATATCTGCCTTCAACTTCAATTGTGACCGACTTAA
TCCCGGCTTCCTCTCCCAATGACTTTTCAACAACCCTTGTCTTATATTTC
TGTTTCTCTCCCCATCTCGTGTACATCCTGAGAAGCATGTCAGCCCAGTC
CTGTGCATCGGTGCCTCCAGCACCAGCAGCTATAGAGATGACTGCACCTT
CTTTGTCATATGGACCAGAAAGAAGTTGAGTCAACTCGAATCTGTCCAAT
GCCTTATTTAGATCTTTAATCACATTGACAGCCTCTTCTAGAAGTGCAGC
ATCTATGGAGTCCATCTCCTCTGTTAGATTAACTATAGTTTCAGCATCTT
CAACCTTCGTTTTAAATTCATTGAGTAAATTTATTTTGTCTTTGACATCA
GTCAGTGCCAAAAGAGTTTCTTGAGCTTTGGCACGATCATCCCAAAATGA
GCTATCAGCTGTTTTTGATTCCAGAACCACGAGTTCCTTTTCTAATTGCT
GCATACCAGCAGATGTTCTAATTTCATTAACGCGTTCTGAGGCCATTTCA
ACATCTTTCCTTAGAGCATAAAAATCTTGCATTACCCATTCTCTTGTACT
GGTTTCTACTCCTTCACTCAATTGGCTATCCGAAGTTGCATATGTAACAG
AAGAAGTGAAACGGGGAGGAGGGGAAGAGAGAATTGCAGAAAAAGGAAAT
GAAGTGGTCGTGAAATGAGTCAGTGATAGCAAAAATGGAGCTTTGTTGAC
GTTCGACAAAGAGAATGGATTTGTGGGTTTTAGAATGGTGGGTGAGCTTA
AAAGAGGGTTTAAAATGGCTTCCATTTTGGGGTTATCGAGGAAAATAGAA
TTTAGCAGTGGAATGTCATCACTTGCTTTGTTTCAACGGTGGTATGTTAG
AATCGCAAATGGATAGAGAAAGAGAGGGAGCAAGACCACCCCTGTAAGCT
CCATAACGGTAAAAGGCCGGTTTCCGGTTGCTTCTAATTAGCTTCTTCTT
TTTTTTTGGTGTAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005139	PCRF

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

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g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

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