g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094088
Unique Name	g.barbadense_cottongen_reftransV1_0094088
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2365

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0094088:1..2355 . Dt08:66632720..66639375 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRPN (Peptide chain release factor 2 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=prfB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.055e-44
Identity = 77/155 (49.68%), Postives = 115/155 (74.19%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
             TSF+ VEVMP L +D+++VE+ E+D+++   R+GG GGQNVNKV T VR+THIPTG+ V+ T +R+Q  N+ +A+  L+AKL  + ++++A+E+  ++G+  +  WG QIR+YVF PY +VKD RT FE + +  VMDG+LD FI AYLK++ S
Sbjct:  211 HTSFTSVEVMPEL-DDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWRIS 364

HSP 2 Score: 147.902 bits (372), Expect = 3.924e-37
Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = -2

Query: 1279 DFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1926
            D   +R+ ++   E++   R S  ++ LE+E+ +LE+K  +  FW+D   AQ+T   L ++K+  N  ++ +   ++ E +++   E    D ++ +E V  + +L+K +  +E+T LLS PYD   A++ I  G+GGT+AQDW DMLLRMYTR+G  + +K  V++   G+EAGIKSVT+  EG  AYG L  E G HR+VR SPF++   R  +
Sbjct:    2 DISVIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAE----DESVHDELVAQLAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRU0 (Peptide chain release factor 2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=prfB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.135e-44
Identity = 76/153 (49.67%), Postives = 112/153 (73.20%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +D+++V++ ++D+++   R+GG GGQNVNKV T VR+THIPTG+ V  T +R+Q  N+ +A+  L+AKL  + +E++A E+  ++GD  +  WG QIR+YVF PY +VKD RT FE + +  VMDGE+D FI AYLK++
Sbjct:  211 HTSFTSVEVMPEL-DDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNFEVAQVDKVMDGEIDGFIDAYLKWR 362

HSP 2 Score: 135.961 bits (341), Expect = 4.724e-33
Identity = 81/212 (38.21%), Postives = 122/212 (57.55%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R+ +    E++   R S  +  LE+E+ +LE+K  +  FW+D   AQ+T   L  +K      ++     ++ E  + +  E +SI   L E  V     L + L ++E+T LLS PYD   A++ I  G+GGT+AQDWADML RMYTR+G  + +K   ++   G+EAGIKSVT+  EG  AYG+L  E G HR+VR SPF++   R  +
Sbjct:    6 IRQKIVENKEKLTSFRRSLDLDGLEEEIALLENKMTEPDFWNDNIAAQKTSQELNTLKSTFETFHDMLELSDETELYLEMLAEDESIKEELEEALVK----LEQILSQYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_CLOP1 (Peptide chain release factor 2 OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.876e-44
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = -2

Query:  274 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYL 723
            QTSF+ VEV+P L  D  D+E+   DL I   RAGG GGQ+VNK E+AVRITHIPTG+ V+C  ERSQ +N+  A+  LK+KL+ + E     +I+ + G+     WG QIR+YVFHPY +VKD RT  ETS++  VMDG++D FI AYL
Sbjct:  212 QTSFASVEVLPELTSDQ-DIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMDGDIDNFIIAYL 360

HSP 2 Score: 159.844 bits (403), Expect = 2.805e-41
Identity = 88/201 (43.78%), Postives = 126/201 (62.69%), Query Frame = -2

Query: 1279 VNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1881
            + E+  S  +  LEK+   LE K  ++ FWDD  KAQE       VKDKI+       +++D E +  L EE D   A   +E ++ +K L+K +D  ++  +LSG YD+  A++++  G GG+DA DW +MLLRMYTRW EK+ Y    ++   G+EAG+KSVT++V+G +AYGYL  EKG HR+VR SPFNA G RQ +
Sbjct:   17 LKEMGASLCLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETA---KEIISEVKALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTS 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRA1 (Peptide chain release factor 2 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) GN=prfB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.385e-44
Identity = 76/153 (49.67%), Postives = 112/153 (73.20%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +D+++VE+ ++D+++   R+GG GGQNVNKV T VR+THIPTG+ V  T +R+Q  N+ +A+  L+AKL  + +E++A E+  ++GD  +  WG QIR+YVF PY +VKD RT FE + +  VMDGE++ FI AYLK++
Sbjct:  211 HTSFASVEVMPEL-DDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWR 362

HSP 2 Score: 140.198 bits (352), Expect = 1.834e-34
Identity = 81/212 (38.21%), Postives = 130/212 (61.32%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R+ +    E++   R S  + +LE+E+ +LE++  +  FW+D   AQ+T   L ++K K +  +  +   ++ E ++ + +E DS+   L E   N+++ L+K +  +E+T LLS PYD   A++ I  G+GGT+AQDW D+LLRMYTR+G    +K  V++   G+EAGIKSVT+  EG  AYG L  E G HR+VR SPF++   R  +
Sbjct:    6 IRQKIVENKEKLTSFRRSLDLDRLEEEIALLENQMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDSLKEELEE---NLMQ-LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THEP1 (Peptide chain release factor 2 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=prfB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.720e-43
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = -2

Query:  268 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKY 723
             TSF+ V V+P + +D VD+E+  EDL+I   RA G GGQ VNK E+AVRITH+PTG+ V C  ERSQ  NK  AL  LKAKL  +  E++  EI++I+G+     WG QIR+YVFHPY +VKD RTG ET+++ +VMDG++D FI+A L Y
Sbjct:  211 HTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKQREIQEIQGELKDISWGNQIRSYVFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 361

HSP 2 Score: 137.502 bits (345), Expect = 1.766e-33
Identity = 80/214 (37.38%), Postives = 124/214 (57.94%), Query Frame = -2

Query: 1279 YALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1920
            +  R  +E   ++  +I +     ++++E+  +E K  D S WDD+ KA+E    L  +K+    L   ++  ED E  + L++E    D  + +    ++++L  A+ + EL  +L+G YD   A +S+  GAGGT++QDWA MLLRMY RW E++ +   +VE   GEEAGIK  TI ++G YAYGYL  E G HR+VR SPF+A   R  +
Sbjct:    4 FETRTRMEELEKKYKDILSVVNENEVDREIEEIEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THESQ (Peptide chain release factor 2 OS=Thermotoga sp. (strain RQ2) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.736e-43
Identity = 81/152 (53.29%), Postives = 108/152 (71.05%), Query Frame = -2

Query:  268 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKY 723
             TSF+ V V+P + +D VD+E+  EDL+I   RA G GGQ VNK E+AVRITH+PTG+ V C  ERSQ  NK  AL  LKAKL  +  E++  EI++I+G+     WG QIR+Y+FHPY +VKD RTG ET+++ +VMDG++D FI+A L Y
Sbjct:  211 HTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 361

HSP 2 Score: 137.117 bits (344), Expect = 1.887e-33
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = -2

Query: 1279 YALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1920
            +  +  +E   ++  ++ +     ++ KEL  +E K  D S WDD+ KA+E    L  +K+    L   ++  ED E  + L++E    D  + +    ++++L  A+ + EL  +L+G YD   A +S+  GAGGT++QDWA MLLRMY RW E++ +   +VE   GEEAGIK  TI ++G YAYGYL  E G HR+VR SPF+A   R  +
Sbjct:    4 FETKTKIEELEKKYKDVLSVVNEDEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRPG (Peptide chain release factor 2 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.757e-43
Identity = 75/153 (49.02%), Postives = 112/153 (73.20%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +++++VE+ ++D+++   R+GG GGQNVNKV T VR+THIPTG+ V  T +R+Q  N+ +A+  L+AKL  + +E++A E+  ++GD  +  WG QIR+YVF PY +VKD RT FE + +  VMDGE++ FI AYLK++
Sbjct:  211 HTSFASVEVMPEL-DNTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWR 362

HSP 2 Score: 139.813 bits (351), Expect = 2.556e-34
Identity = 81/212 (38.21%), Postives = 129/212 (60.85%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R+ +    E++   R S  + +LE+E+ +LE+   +  FW+D   AQ+T   L ++K K +  +  +   ++ E ++ + +E DS+   L E   N+++ L+K +  +E+T LLS PYD   A++ I  G+GGT+AQDW D+LLRMYTR+G    +K  V++   G+EAGIKSVT+  EG  AYG L  E G HR+VR SPF++   R  +
Sbjct:    6 IRQKIVENKEKLTSFRRSLDLDRLEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDSLKEELEE---NLMQ-LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THEMA (Peptide chain release factor 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.056e-43
Identity = 81/152 (53.29%), Postives = 108/152 (71.05%), Query Frame = -2

Query:  268 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKY 723
             TSF+ V V+P + +D VD+E+  EDL+I   RA G GGQ VNK E+AVRITH+PTG+ V C  ERSQ  NK  AL  LKAKL  +  E++  EI++I+G+     WG QIR+Y+FHPY +VKD RTG ET+++ +VMDG++D FI+A L Y
Sbjct:  213 HTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 363

HSP 2 Score: 137.502 bits (345), Expect = 1.805e-33
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = -2

Query: 1279 YALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1920
            +  +  +E   ++  ++ +     ++ KEL  +E K  D S WDD+ KA+E    L  +K+    L   ++  ED E  + L++E    D  + +    ++++L  A+ + EL  +L+G YD   A +S+  GAGGT++QDWA MLLRMY RW E++ +   +VE   GEEAGIK  TI ++G YAYGYL  E G HR+VR SPF+A   R  +
Sbjct:    6 FETKTKIEELEKKYKDVLSVVNEDEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTS 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_CLOPS (Peptide chain release factor 2 OS=Clostridium perfringens (strain SM101 / Type A) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.355e-43
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = -2

Query:  274 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYL 723
            QTSF+ VEV+P L  D  D+E+   DL I   RAGG GGQ+VNK E+AVRITHIPTG+ V+C  ERSQ +N+  A+  LK+KL+ + E     +I+ + G+     WG QIR+YVFHPY +VKD RT  ETS++  VM G++D FI AYL
Sbjct:  214 QTSFASVEVLPELTSDQ-DIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMGGDIDNFIIAYL 362

HSP 2 Score: 159.458 bits (402), Expect = 3.067e-41
Identity = 88/201 (43.78%), Postives = 126/201 (62.69%), Query Frame = -2

Query: 1279 VNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1881
            + E+  S  +  LEK+   LE K  ++ FWDD  KAQE       VKDKI+       +++D E +  L EE D   A   +E ++ +K L+K +D  ++  +LSG YD+  A++++  G GG+DA DW +MLLRMYTRW EK+ Y    ++   G+EAG+KSVT++V+G +AYGYL  EKG HR+VR SPFNA G RQ +
Sbjct:   19 LKEMGASLDLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETA---KEIISEVKALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTS 216

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_OENOB (Peptide chain release factor 2 OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) GN=prfB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.640e-42
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
             TSF  ++VMP L +D +++E+  +D+++   R+GG GGQNVNKV TAVR+THIPTG+ V    ER+Q  N+  A+  LKAKL    E++R  E  ++ G  +   WG QIR+YVF PY++VKD+R+G+ET D   VMDG LD FI AYLK+K S
Sbjct:  213 HTSFVSIDVMPELDDDEIEIEIKPQDVKMDVYRSGGAGGQNVNKVSTAVRLTHIPTGIVVASQVERTQYGNRDIAMKMLKAKLYEQEEQKREEEHAKLSGTKLDVAWGSQIRSYVFQPYRMVKDLRSGYETGDTDGVMDGNLDPFINAYLKWKLS 367

HSP 2 Score: 121.709 bits (304), Expect = 3.636e-28
Identity = 73/213 (34.27%), Postives = 112/213 (52.58%), Query Frame = -2

Query: 1273 RKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1911
            R  +    E+++  R++  +  L+  +   E K +   FWDD+  AQ+ +     +K++ +     +  VED   +  L  E D  DA +  E    I+   K L+++ L QLL+  YD   A++ I  G GGT++ DWA  L RMYTRW +   +K  V +   G+ AGI S T+ + G  AYG+L  EKG HR VR SPF++ G R  + V
Sbjct:    7 RNSISDMQEQIDGFRSTLDLDALDASIAENEDKMSQPGFWDDQQSAQKIIDETNTLKNRRDSFLSLQKSVEDLTAMAELLSEED--DADMHAELDTDIEKTEKDLEKYNLNQLLTEKYDSNNAILEIHPGEGGTESTDWASNLYRMYTRWAQAHDFKVEVTDYQTGDVAGIDSATLRIIGHNAYGFLRSEKGVHRFVRISPFDSAGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: V4K6J8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10004205mg PE=4 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 6.923e-110
Identity = 180/245 (73.47%), Postives = 207/245 (84.49%), Query Frame = -2

Query: 1279 RFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2013
            R  S + +A  +S LS   E+ T EW MQDFY LRKDVE+AS RV EIR S+G+QQ+E E+ +LESK  D+SFWDDRAKAQETL AL D+KD+  LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFELTQLLSGPYD+EGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT VVE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   45 RLISPLLFAAQESNLSVSNESDTIEWQMQDFYTLRKDVEVASARVEEIRASSGLQQIENEISILESKATDTSFWDDRAKAQETLSALNDLKDRSRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDQEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTNVVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 289

HSP 2 Score: 286.189 bits (731), Expect = 5.457e-84
Identity = 133/159 (83.65%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + LSRLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+S+ ++
Sbjct:  287 QTSFSGVEVMPLLPEEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLSRLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYSLAMA 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: F4K2X9_ARATH (Protein high chlorophyll fluorescent 109 OS=Arabidopsis thaliana GN=HCF109 PE=4 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 1.618e-109
Identity = 177/240 (73.75%), Postives = 205/240 (85.42%), Query Frame = -2

Query: 1279 VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1998
            + +A  +S LS   E  T EW+MQDFY LRKDVE+AS RV EIR SA +QQLE+E+  LESK  D+SFWDDR KAQETL +L D+KD++ LL+EFKT VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LD+FELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT+VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   56 IVFAAQESNLSVSNENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 295

HSP 2 Score: 125.176 bits (313), Expect = 2.305e-27
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2

Query:  532 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTE 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCT+
Sbjct:  293 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: R0F555_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004691mg PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.170e-109
Identity = 179/241 (74.27%), Postives = 206/241 (85.48%), Query Frame = -2

Query: 1279 SVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2001
            SV +A  +S LS   E+ T EWVMQDFY LRKDVE+AS RV EIR SAG+ QLE+E+  LESK  D+SFWDDR KAQETL +L D+KD++ LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YK +VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   84 SVVFAAQESNLSVSNESETSEWVMQDFYTLRKDVEIASARVEEIRDSAGLTQLEQEIANLESKATDTSFWDDRVKAQETLSSLNDLKDRMRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKIKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 324

HSP 2 Score: 292.352 bits (747), Expect = 9.182e-86
Identity = 135/159 (84.91%), Postives = 151/159 (94.97%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKLLVIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  322 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLLVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 480

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: D7MI02_ARALL (HCF109 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493658 PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 4.893e-109
Identity = 179/237 (75.53%), Postives = 204/237 (86.08%), Query Frame = -2

Query: 1279 ATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1989
            A  +S LS   E  T EW+MQDFY LRKDVE+AS RV EIR SAG++QLE+E+  LESK  D+SFWDDR KAQETL AL D+KD++ LL+EFKT VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT+VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   56 AAQESNLSVSNENETSEWLMQDFYTLRKDVEIASARVEEIRASAGLEQLEQEIANLESKATDTSFWDDRTKAQETLSALNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 292

HSP 2 Score: 292.352 bits (747), Expect = 3.337e-86
Identity = 135/159 (84.91%), Postives = 151/159 (94.97%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKLLVIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  290 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLLVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 448

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A068U7C9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_12 OS=Coffea canephora GN=GSCOC_T00017482001 PE=4 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.731e-108
Identity = 181/250 (72.40%), Postives = 206/250 (82.40%), Query Frame = -2

Query: 1279 SSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2028
            ++ PP F S      +  ++  GV T T EW M DFY LR++VE+ SERV EIR +AG++QLE++L  LE    DSS WDDRAKAQE L  LTDV+D++ LLN+FK ++EDAETIV LTEEMDSID  LLEEAV++IKDLNKALD FE TQLLSGPYDKEGAVI+I AGAGGTDAQDWADMLLRMY RW EKQKYKT+VVEKSLG+EAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:   77 ATHPPAFLSGSKVLLAAPEV--GVSTETSEWAMPDFYTLRRNVEVTSERVEEIRAAAGLKQLEEDLAKLEDAAVDSSLWDDRAKAQEILQDLTDVRDRMKLLNDFKAQIEDAETIVKLTEEMDSIDTGLLEEAVSIIKDLNKALDHFEFTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWAEKQKYKTKVVEKSLGDEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 324

HSP 2 Score: 303.138 bits (775), Expect = 7.042e-90
Identity = 144/159 (90.57%), Postives = 154/159 (96.86%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSG+EVMPL+PE S+DVE+PEEDLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEER+QLANKIKAL RLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDI SVMDGELD FIK+YLKYK+S +VS
Sbjct:  322 QTSFSGIEVMPLIPE-SMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERTQLANKIKALGRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELDLFIKSYLKYKYSTSVS 479

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RF2_STRPN	1.055e-44	49.68	Peptide chain release factor 2 OS=Streptococcus pn...	[more]
RF2_STRU0	2.135e-44	49.67	Peptide chain release factor 2 OS=Streptococcus ub...	[more]
RF2_CLOP1	3.876e-44	53.33	Peptide chain release factor 2 OS=Clostridium perf...	[more]
RF2_STRA1	6.385e-44	49.67	Peptide chain release factor 2 OS=Streptococcus ag...	[more]
RF2_THEP1	1.720e-43	53.95	Peptide chain release factor 2 OS=Thermotoga petro...	[more]
RF2_THESQ	2.736e-43	53.29	Peptide chain release factor 2 OS=Thermotoga sp. (...	[more]
RF2_STRPG	2.757e-43	49.02	Peptide chain release factor 2 OS=Streptococcus py...	[more]
RF2_THEMA	3.056e-43	53.29	Peptide chain release factor 2 OS=Thermotoga marit...	[more]
RF2_CLOPS	3.355e-43	52.67	Peptide chain release factor 2 OS=Clostridium perf...	[more]
RF2_OENOB	3.640e-42	50.32	Peptide chain release factor 2 OS=Oenococcus oeni ...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4K6J8_EUTSA	6.923e-110	73.47	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
F4K2X9_ARATH	1.618e-109	73.75	Protein high chlorophyll fluorescent 109 OS=Arabid...	[more]
R0F555_9BRAS	4.170e-109	74.27	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
D7MI02_ARALL	4.893e-109	75.53	HCF109 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
A0A068U7C9_COFCA	3.731e-108	72.40	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..210
None	No IPR available	GENE3D	1.20.58.410		coord: 98..209 e-value: 6.4E-15 score: 54.6
None	No IPR available	PANTHER	PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	coord: 40..308
None	No IPR available	PANTHER	PTHR11075:SF46	PROTEIN HIGH CHLOROPHYLL FLUORESCENT 109	coord: 40..308
None	No IPR available	SUPERFAMILY	75620	Release factor	coord: 122..309
IPR005139	Peptide chain release factor	SMART	SM00937	PCRF_a_2	coord: 177..289 e-value: 2.3E-44 score: 163.4
IPR005139	Peptide chain release factor	PFAM	PF03462	PCRF	coord: 123..311 e-value: 4.1E-49 score: 166.9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094088 ID=g.barbadense_cottongen_reftransV1_0094088; Name=g.barbadense_cottongen_reftransV1_0094088; organism=Gossypium barbadense; type=contig; length=2365bp
AACAAATTAAATAAGATTCATATGGTACTATTTGAATGGTTAGCAGATAA
ATGGACTCGGATAACAAATAAAATAAGTCGTTCCGAATATTTAAAAAATT
ACAAATATCCGAGCCGCTGTTATTCTTAAATAACTCAAAGAATTTGAGCC
TACATACACAAAAAGGGTATCATATATAAGTTAATCATGAATCACTAAAC
TCTTTAATTAGGCCCCTGTTGTAGTTGCAGTCGCAGTTGCAGTTGCAGAT
ACATTGATACTGTGTTTATATTTAAGGTAAGCTTTGATGAAGGCATCCAA
TTCACCATCCATCACCGATACAATATCCGAAGTCTCGAACCCAGTTCGAA
CATCTTTCACTAGTTTGTAAGGATGGAATACATAGTTTCGTATCTGCTGC
CCCCACTCGGCCTTCACTGCATCTCCCCTTATTTGCTTGATTTCGGATGC
ACGTTGCTCCTCGGCTATCACTAATAACTTGGCTTTTAATCTGCTAAGAG
CCTTGATCTTGTTTGCTAGCTGCGACCTCTCTTCTGTGCAACGAACGGTA
ACACCAGTCGGGATGTGAGTAATCCGAACGGCGGTTTCAACTTTGTTCAC
ATTCTGACCTCCTTTCCCTCCTGCCCTTGAAAATGAAATTTCAAGGTCTT
CCTCAGGTAATTCAACATCTACCGAATCTTCAGGGAGAAGAGGCATTACT
TCAACACCGGAAAAGCTTGTCTGTATATAATCCAATGTAAGCAAATAAAT
GGAGGCAAGGGTTCAATGTGAATGATAAAAGATTCAACAACAACCTGATT
TCTAAACCAAAGGTCTCTATGAGGTTATCGGAAGACAATGATTCTTTTCT
CAAAGGAAAAAGAATAGAGAGGGTTCTGTTCGGAAGAGGATACCAGTCAA
ACTGGTATGAAATAGCATAGCTTTTCTTGAAAGAATTTACAGAAAGCATG
TTGAACTTCCATCAACCGAGGCAAAAAAAACTTCCATCACGTATGCAACA
AGTCTTTCAGGCAAAGTATCAAAACAACCATCTCGTGGCAGCTATTACCG
TGTACATGATCTTCCTAGTGCAACAAATCCACTCACAGTATGGATGCTTA
GAAGCATAATGCAAACAAGTAAAAGATGCAGGAAAATTAACCACTTATTA
TAGAAATTTGAAGCAAAAACGAATGTTGGTCATTGAGATAATCTAATTAT
TGGATAAGAATGGTTAAAAACAATTACCACAAAAGAAGAGAATGAGTCTT
TTCTAAACGTTCAACAAAACATAACAGAAGTTACCTGACGAAGACCTTTA
GCATTGAAAGGAGACTGTCGTACTATACGATGAGTCCCTTTCTCTCCAGA
TAGATAGCCATAAGCATATCTGCCTTCAACTTCAATTGTGACCGACTTAA
TCCCGGCTTCCTCTCCCAATGACTTTTCAACAACCCTTGTCTTATATTTC
TGTTTCTCTCCCCATCTCGTGTACATCCTGAGAAGCATGTCAGCCCAGTC
CTGTGCATCGGTGCCTCCAGCACCAGCAGCTATAGAGATGACTGCACCTT
CTTTGTCATATGGACCAGAAAGAAGTTGAGTCAACTCGAATCTGTCCAAT
GCCTTATTTAGATCTTTAATCACATTGACAGCCTCTTCTAGAAGTGCAGC
ATCTATGGAGTCCATCTCCTCTGTTAGATTAACTATAGTTTCAGCATCTT
CAACCTTCGTTTTAAATTCATTGAGTAAATTTATTTTGTCTTTGACATCA
GTCAGTGCCAAAAGAGTTTCTTGAGCTTTGGCACGATCATCCCAAAATGA
GCTATCAGCTGTTTTTGATTCCAGAACCACGAGTTCCTTTTCTAATTGCT
GCATACCAGCAGATGTTCTAATTTCATTAACGCGTTCTGAGGCCATTTCA
ACATCTTTCCTTAGAGCATAAAAATCTTGCATTACCCATTCTCTTGTACT
GGTTTCTACTCCTTCACTCAATTGGCTATCCGAAGTTGCATATGTAACAG
AAGAAGTGAAACGGGGAGGAGGGGAAGAGAGAATTGCAGAAAAAGGAAAT
GAAGTGGTCGTGAAATGAGTCAGTGATAGCAAAAATGGAGCTTTGTTGAC
GTTCGACAAAGAGAATGGATTTGTGGGTTTTAGAATGGTGGGTGAGCTTA
AAAGAGGGTTTAAAATGGCTTCCATTTTGGGGTTATCGAGGAAAATAGAA
TTTAGCAGTGGAATGTCATCACTTGCTTTGTTTCAACGGTGGTATGTTAG
AATCGCAAATGGATAGAGAAAGAGAGGGAGCAAGACCACCCCTGTAAGCT
CCATAACGGTAAAAGGCCGGTTTCCGGTTGCTTCTAATTAGCTTCTTCTT
TTTTTTTGGTGTAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005139	PCRF

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

Search form

g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

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