g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094088
Unique Name	g.barbadense_cottongen_reftransV1_0094088
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2365

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0094088:1..2355 . Dt08:66632720..66639375 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRPN (Peptide chain release factor 2 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=prfB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.055e-44
Identity = 77/155 (49.68%), Postives = 115/155 (74.19%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
             TSF+ VEVMP L +D+++VE+ E+D+++   R+GG GGQNVNKV T VR+THIPTG+ V+ T +R+Q  N+ +A+  L+AKL  + ++++A+E+  ++G+  +  WG QIR+YVF PY +VKD RT FE + +  VMDG+LD FI AYLK++ S
Sbjct:  211 HTSFTSVEVMPEL-DDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWGSQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWRIS 364

HSP 2 Score: 147.902 bits (372), Expect = 3.924e-37
Identity = 82/216 (37.96%), Postives = 132/216 (61.11%), Query Frame = -2

Query: 1279 DFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1926
            D   +R+ ++   E++   R S  ++ LE+E+ +LE+K  +  FW+D   AQ+T   L ++K+  N  ++ +   ++ E +++   E    D ++ +E V  + +L+K +  +E+T LLS PYD   A++ I  G+GGT+AQDW DMLLRMYTR+G  + +K  V++   G+EAGIKSVT+  EG  AYG L  E G HR+VR SPF++   R  +
Sbjct:    2 DISVIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAE----DESVHDELVAQLAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRU0 (Peptide chain release factor 2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=prfB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.135e-44
Identity = 76/153 (49.67%), Postives = 112/153 (73.20%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +D+++V++ ++D+++   R+GG GGQNVNKV T VR+THIPTG+ V  T +R+Q  N+ +A+  L+AKL  + +E++A E+  ++GD  +  WG QIR+YVF PY +VKD RT FE + +  VMDGE+D FI AYLK++
Sbjct:  211 HTSFTSVEVMPEL-DDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNFEVAQVDKVMDGEIDGFIDAYLKWR 362

HSP 2 Score: 135.961 bits (341), Expect = 4.724e-33
Identity = 81/212 (38.21%), Postives = 122/212 (57.55%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R+ +    E++   R S  +  LE+E+ +LE+K  +  FW+D   AQ+T   L  +K      ++     ++ E  + +  E +SI   L E  V     L + L ++E+T LLS PYD   A++ I  G+GGT+AQDWADML RMYTR+G  + +K   ++   G+EAGIKSVT+  EG  AYG+L  E G HR+VR SPF++   R  +
Sbjct:    6 IRQKIVENKEKLTSFRRSLDLDGLEEEIALLENKMTEPDFWNDNIAAQKTSQELNTLKSTFETFHDMLELSDETELYLEMLAEDESIKEELEEALVK----LEQILSQYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_CLOP1 (Peptide chain release factor 2 OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.876e-44
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = -2

Query:  274 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYL 723
            QTSF+ VEV+P L  D  D+E+   DL I   RAGG GGQ+VNK E+AVRITHIPTG+ V+C  ERSQ +N+  A+  LK+KL+ + E     +I+ + G+     WG QIR+YVFHPY +VKD RT  ETS++  VMDG++D FI AYL
Sbjct:  212 QTSFASVEVLPELTSDQ-DIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMDGDIDNFIIAYL 360

HSP 2 Score: 159.844 bits (403), Expect = 2.805e-41
Identity = 88/201 (43.78%), Postives = 126/201 (62.69%), Query Frame = -2

Query: 1279 VNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1881
            + E+  S  +  LEK+   LE K  ++ FWDD  KAQE       VKDKI+       +++D E +  L EE D   A   +E ++ +K L+K +D  ++  +LSG YD+  A++++  G GG+DA DW +MLLRMYTRW EK+ Y    ++   G+EAG+KSVT++V+G +AYGYL  EKG HR+VR SPFNA G RQ +
Sbjct:   17 LKEMGASLCLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETA---KEIISEVKALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTS 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRA1 (Peptide chain release factor 2 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) GN=prfB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.385e-44
Identity = 76/153 (49.67%), Postives = 112/153 (73.20%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +D+++VE+ ++D+++   R+GG GGQNVNKV T VR+THIPTG+ V  T +R+Q  N+ +A+  L+AKL  + +E++A E+  ++GD  +  WG QIR+YVF PY +VKD RT FE + +  VMDGE++ FI AYLK++
Sbjct:  211 HTSFASVEVMPEL-DDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWR 362

HSP 2 Score: 140.198 bits (352), Expect = 1.834e-34
Identity = 81/212 (38.21%), Postives = 130/212 (61.32%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R+ +    E++   R S  + +LE+E+ +LE++  +  FW+D   AQ+T   L ++K K +  +  +   ++ E ++ + +E DS+   L E   N+++ L+K +  +E+T LLS PYD   A++ I  G+GGT+AQDW D+LLRMYTR+G    +K  V++   G+EAGIKSVT+  EG  AYG L  E G HR+VR SPF++   R  +
Sbjct:    6 IRQKIVENKEKLTSFRRSLDLDRLEEEIALLENQMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDSLKEELEE---NLMQ-LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THEP1 (Peptide chain release factor 2 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=prfB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.720e-43
Identity = 82/152 (53.95%), Postives = 108/152 (71.05%), Query Frame = -2

Query:  268 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKY 723
             TSF+ V V+P + +D VD+E+  EDL+I   RA G GGQ VNK E+AVRITH+PTG+ V C  ERSQ  NK  AL  LKAKL  +  E++  EI++I+G+     WG QIR+YVFHPY +VKD RTG ET+++ +VMDG++D FI+A L Y
Sbjct:  211 HTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKQREIQEIQGELKDISWGNQIRSYVFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 361

HSP 2 Score: 137.502 bits (345), Expect = 1.766e-33
Identity = 80/214 (37.38%), Postives = 124/214 (57.94%), Query Frame = -2

Query: 1279 YALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1920
            +  R  +E   ++  +I +     ++++E+  +E K  D S WDD+ KA+E    L  +K+    L   ++  ED E  + L++E    D  + +    ++++L  A+ + EL  +L+G YD   A +S+  GAGGT++QDWA MLLRMY RW E++ +   +VE   GEEAGIK  TI ++G YAYGYL  E G HR+VR SPF+A   R  +
Sbjct:    4 FETRTRMEELEKKYKDILSVVNENEVDREIEEIEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THESQ (Peptide chain release factor 2 OS=Thermotoga sp. (strain RQ2) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.736e-43
Identity = 81/152 (53.29%), Postives = 108/152 (71.05%), Query Frame = -2

Query:  268 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKY 723
             TSF+ V V+P + +D VD+E+  EDL+I   RA G GGQ VNK E+AVRITH+PTG+ V C  ERSQ  NK  AL  LKAKL  +  E++  EI++I+G+     WG QIR+Y+FHPY +VKD RTG ET+++ +VMDG++D FI+A L Y
Sbjct:  211 HTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 361

HSP 2 Score: 137.117 bits (344), Expect = 1.887e-33
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = -2

Query: 1279 YALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1920
            +  +  +E   ++  ++ +     ++ KEL  +E K  D S WDD+ KA+E    L  +K+    L   ++  ED E  + L++E    D  + +    ++++L  A+ + EL  +L+G YD   A +S+  GAGGT++QDWA MLLRMY RW E++ +   +VE   GEEAGIK  TI ++G YAYGYL  E G HR+VR SPF+A   R  +
Sbjct:    4 FETKTKIEELEKKYKDVLSVVNEDEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRPG (Peptide chain release factor 2 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.757e-43
Identity = 75/153 (49.02%), Postives = 112/153 (73.20%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +++++VE+ ++D+++   R+GG GGQNVNKV T VR+THIPTG+ V  T +R+Q  N+ +A+  L+AKL  + +E++A E+  ++GD  +  WG QIR+YVF PY +VKD RT FE + +  VMDGE++ FI AYLK++
Sbjct:  211 HTSFASVEVMPEL-DNTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWGSQIRSYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWR 362

HSP 2 Score: 139.813 bits (351), Expect = 2.556e-34
Identity = 81/212 (38.21%), Postives = 129/212 (60.85%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R+ +    E++   R S  + +LE+E+ +LE+   +  FW+D   AQ+T   L ++K K +  +  +   ++ E ++ + +E DS+   L E   N+++ L+K +  +E+T LLS PYD   A++ I  G+GGT+AQDW D+LLRMYTR+G    +K  V++   G+EAGIKSVT+  EG  AYG L  E G HR+VR SPF++   R  +
Sbjct:    6 IRQKIVENKEKLTSFRRSLDLDRLEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDSLKEELEE---NLMQ-LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_THEMA (Peptide chain release factor 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.056e-43
Identity = 81/152 (53.29%), Postives = 108/152 (71.05%), Query Frame = -2

Query:  268 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKY 723
             TSF+ V V+P + +D VD+E+  EDL+I   RA G GGQ VNK E+AVRITH+PTG+ V C  ERSQ  NK  AL  LKAKL  +  E++  EI++I+G+     WG QIR+Y+FHPY +VKD RTG ET+++ +VMDG++D FI+A L Y
Sbjct:  213 HTSFASVNVIPEI-DDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEIQGELKDISWGNQIRSYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEAELVY 363

HSP 2 Score: 137.502 bits (345), Expect = 1.805e-33
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = -2

Query: 1279 YALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1920
            +  +  +E   ++  ++ +     ++ KEL  +E K  D S WDD+ KA+E    L  +K+    L   ++  ED E  + L++E    D  + +    ++++L  A+ + EL  +L+G YD   A +S+  GAGGT++QDWA MLLRMY RW E++ +   +VE   GEEAGIK  TI ++G YAYGYL  E G HR+VR SPF+A   R  +
Sbjct:    6 FETKTKIEELEKKYKDVLSVVNEDEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELSDE----DQEMAQHVEEIVQELEGAVKKLELEIILNGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARRRHTS 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_CLOPS (Peptide chain release factor 2 OS=Clostridium perfringens (strain SM101 / Type A) GN=prfB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.355e-43
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = -2

Query:  274 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYL 723
            QTSF+ VEV+P L  D  D+E+   DL I   RAGG GGQ+VNK E+AVRITHIPTG+ V+C  ERSQ +N+  A+  LK+KL+ + E     +I+ + G+     WG QIR+YVFHPY +VKD RT  ETS++  VM G++D FI AYL
Sbjct:  214 QTSFASVEVLPELTSDQ-DIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMGGDIDNFIIAYL 362

HSP 2 Score: 159.458 bits (402), Expect = 3.067e-41
Identity = 88/201 (43.78%), Postives = 126/201 (62.69%), Query Frame = -2

Query: 1279 VNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1881
            + E+  S  +  LEK+   LE K  ++ FWDD  KAQE       VKDKI+       +++D E +  L EE D   A   +E ++ +K L+K +D  ++  +LSG YD+  A++++  G GG+DA DW +MLLRMYTRW EK+ Y    ++   G+EAG+KSVT++V+G +AYGYL  EKG HR+VR SPFNA G RQ +
Sbjct:   19 LKEMGASLDLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETA---KEIISEVKALSKEIDTLKIETILSGEYDRNNAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTS 216

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_OENOB (Peptide chain release factor 2 OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) GN=prfB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.640e-42
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = -2

Query:  259 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHS 723
             TSF  ++VMP L +D +++E+  +D+++   R+GG GGQNVNKV TAVR+THIPTG+ V    ER+Q  N+  A+  LKAKL    E++R  E  ++ G  +   WG QIR+YVF PY++VKD+R+G+ET D   VMDG LD FI AYLK+K S
Sbjct:  213 HTSFVSIDVMPELDDDEIEIEIKPQDVKMDVYRSGGAGGQNVNKVSTAVRLTHIPTGIVVASQVERTQYGNRDIAMKMLKAKLYEQEEQKREEEHAKLSGTKLDVAWGSQIRSYVFQPYRMVKDLRSGYETGDTDGVMDGNLDPFINAYLKWKLS 367

HSP 2 Score: 121.709 bits (304), Expect = 3.636e-28
Identity = 73/213 (34.27%), Postives = 112/213 (52.58%), Query Frame = -2

Query: 1273 RKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVTSV 1911
            R  +    E+++  R++  +  L+  +   E K +   FWDD+  AQ+ +     +K++ +     +  VED   +  L  E D  DA +  E    I+   K L+++ L QLL+  YD   A++ I  G GGT++ DWA  L RMYTRW +   +K  V +   G+ AGI S T+ + G  AYG+L  EKG HR VR SPF++ G R  + V
Sbjct:    7 RNSISDMQEQIDGFRSTLDLDALDASIAENEDKMSQPGFWDDQQSAQKIIDETNTLKNRRDSFLSLQKSVEDLTAMAELLSEED--DADMHAELDTDIEKTEKDLEKYNLNQLLTEKYDSNNAILEIHPGEGGTESTDWASNLYRMYTRWAQAHDFKVEVTDYQTGDVAGIDSATLRIIGHNAYGFLRSEKGVHRFVRISPFDSAGRRHTSFV 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0A0LY01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652260 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 2.034e-115
Identity = 188/259 (72.59%), Postives = 219/259 (84.56%), Query Frame = -2

Query: 1279 SSPPPRFTSS---------VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2028
            +SP P F +S         V +AT +S + E ++T TREW MQDFY LRK+VE  SERV EIR SAG+ QL++EL  LESK AD+SFWDDR+KAQ+ L+A+TDVKDKI +L +FKT+VE+AETIV LTEEMDS+D  LLEEA  +IKDLNKALD+FEL++LLSGPYDKEGAVISI+AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKS TIE+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   36 TSPSPHFRTSLSTHSRFSLVPFATHESPVGEAIDTDTREWAMQDFYTLRKEVETTSERVEEIRNSAGLLQLDQELADLESKAADNSFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKLTEEMDSVDVGLLEEATKIIKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 294

HSP 2 Score: 311.997 bits (798), Expect = 1.316e-93
Identity = 149/159 (93.71%), Postives = 157/159 (98.74%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDIVSVMDGEL+ FIKAYLKYK+SI +S
Sbjct:  292 QTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDIVSVMDGELEPFIKAYLKYKYSIALS 450

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: Q6ZY50_CUCSA (Putative translation releasing factor 2 OS=Cucumis sativus GN=rf2 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.870e-114
Identity = 187/259 (72.20%), Postives = 218/259 (84.17%), Query Frame = -2

Query: 1279 SSPPPRFTSS---------VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2028
            +SP P F +S         V +AT +S + E ++T TREW  QDFY LRK+VE  SERV EIR SAG+ QL++EL  LESK AD+SFWDDR+KAQ+ L+A+TDVKDKI +L +FKT+VE+AETIV LTEEMDS+D  LLEEA  +IKDLNKALD+FEL++LLSGPYDKEGAVISI+AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKS GEEAGIKS TIE+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   36 TSPSPHFRTSLSTHSRFSLVPFATHESPVGEAIDTDTREWATQDFYTLRKEVETTSERVEEIRNSAGLLQLDQELADLESKAADNSFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKLTEEMDSVDVGLLEEATKIIKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 294

HSP 2 Score: 312.383 bits (799), Expect = 1.136e-93
Identity = 149/159 (93.71%), Postives = 157/159 (98.74%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDIVSVMDGEL+ FIKAYLKYK+SI +S
Sbjct:  292 QTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDIVSVMDGELEPFIKAYLKYKYSIALS 450

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: I1L681_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 1.751e-113
Identity = 205/303 (67.66%), Postives = 232/303 (76.57%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILS--SPPPRFTSSVTYATSDSQLS--EGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            ME +  PL    TIL PT   SL    + P       F +      +  S  SPPP     + +AT ++QLS  EG  T   +W +QDFY+LRKDVE+ S+RV EIR S+G+Q LE+EL  LE + ADSSFWD+R KAQETL  L DVKDKI LLN+FKT+VEDAETIV+LTEEMDSID  L EEA N+IK+LNK++DR+ELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQKYKTRVVEKS GEEAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEVVSQPLC---TILTPTRKHSLLIPQQIPNPSKHFPFLSFRATTLSTSSRFSPPP-----LLFATPENQLSIGEGENTDASDWALQDFYSLRKDVEIMSQRVGEIRESSGLQLLEQELGNLEEQAADSSFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRGLFEEASNLIKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQKYKTRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 295

HSP 2 Score: 303.138 bits (775), Expect = 3.759e-90
Identity = 142/159 (89.31%), Postives = 156/159 (98.11%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VE+PEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKI+ALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ET+DI SVMDGELD FIK+YLK+K+++++S
Sbjct:  293 QTSFSGVEVMPLLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDITSVMDGELDPFIKSYLKHKYNMSLS 451

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0B2RBJ2_GLYSO (Peptide chain release factor 2 OS=Glycine soja GN=glysoja_004976 PE=4 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 1.751e-113
Identity = 205/303 (67.66%), Postives = 232/303 (76.57%), Query Frame = -2

Query: 1279 MEAILNPLLSSPTILKPTNPFSLSNVNKAXXXXXXXXXXXXXXXXSAILS--SPPPRFTSSVTYATSDSQLS--EGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2175
            ME +  PL    TIL PT   SL    + P       F +      +  S  SPPP     + +AT ++QLS  EG  T   +W +QDFY+LRKDVE+ S+RV EIR S+G+Q LE+EL  LE + ADSSFWD+R KAQETL  L DVKDKI LLN+FKT+VEDAETIV+LTEEMDSID  L EEA N+IK+LNK++DR+ELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQKYKTRVVEKS GEEAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:    1 MEVVSQPLC---TILTPTRKHSLLIPQQIPNPSKHFPFLSFRATTLSTSSRFSPPP-----LLFATPENQLSIGEGENTDASDWALQDFYSLRKDVEIMSQRVGEIRESSGLQLLEQELGNLEEQAADSSFWDNRGKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVSLTEEMDSIDRGLFEEASNLIKELNKSIDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQKYKTRVVEKSPGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 295

HSP 2 Score: 303.138 bits (775), Expect = 3.759e-90
Identity = 142/159 (89.31%), Postives = 156/159 (98.11%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP++S++VE+PEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKI+ALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ET+DI SVMDGELD FIK+YLK+K+++++S
Sbjct:  293 QTSFSGVEVMPLLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETTDITSVMDGELDPFIKSYLKHKYNMSLS 451

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A067EPJ0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0170091mg PE=4 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.547e-113
Identity = 185/216 (85.65%), Postives = 197/216 (91.20%), Query Frame = -2

Query: 1285 MQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ 1932
            MQDFY LRKDVE AS+RV EIR SAG+QQLEKEL  LE K ADSSFWD+RA+AQETL ALTDVKDKINLL +FKTK++DA TIV LTEEMDS DA LLEEA ++IK+LNKALD+FELTQLLSGPYDKEGAVISI AGAGGTDAQDWADMLLRMY RWGEKQ+YKTRVVEKSLGEEAGIKS  IEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ
Sbjct:    1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ 216

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: M4FEH3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra039494 PE=4 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.460e-112
Identity = 182/249 (73.09%), Postives = 214/249 (85.94%), Query Frame = -2

Query: 1279 SPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2025
            S   R TS +++AT +S  S   E+ T EWVMQDFY LRKDVE+AS RV EIR SAG++QL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK++DRFELTQLLSGPYDKEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   45 SSTSRLTSPISFATQES--SNLSESDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLEQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSVDRFELTQLLSGPYDKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 291

HSP 2 Score: 283.108 bits (723), Expect = 8.626e-83
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  289 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 447

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A078JNZ8_BRANA (BnaAnng27520D protein OS=Brassica napus GN=BnaAnng27520D PE=4 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.807e-111
Identity = 181/249 (72.69%), Postives = 214/249 (85.94%), Query Frame = -2

Query: 1279 SPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2025
            S   R TS +++AT +S  S   E+ T EWVMQDFY LRKDVE+AS RV EIR SAG++QL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK++DRFELTQLLSGPYDKEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E++GRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   45 SSTSRLTSPISFATQES--SNLSESDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLEQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSVDRFELTQLLSGPYDKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIDGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 291

HSP 2 Score: 283.108 bits (723), Expect = 9.179e-83
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  289 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 447

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A078EZU1_BRANA (BnaC06g12020D protein OS=Brassica napus GN=BnaC06g12020D PE=4 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 1.096e-110
Identity = 180/238 (75.63%), Postives = 209/238 (87.82%), Query Frame = -2

Query: 1279 YATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1992
            +AT +S LSE   + T EWVMQDFY LRKDVE+AS RV EIR SAG+QQL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEM+S D +LLEEA+ +IKDLNK+LDRFELTQLLSGPY+KEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   55 FATQESNLSE---SDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLQQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMESTDVSLLEEAMAIIKDLNKSLDRFELTQLLSGPYNKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 289

HSP 2 Score: 282.722 bits (722), Expect = 1.209e-82
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  287 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A0D3CSR1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=HCF109 PE=4 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 1.096e-110
Identity = 180/238 (75.63%), Postives = 209/238 (87.82%), Query Frame = -2

Query: 1279 YATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1992
            +AT +S LSE   + T EWVMQDFY LRKDVE+AS RV EIR SAG+QQL+ E+ +LESK  D+SFWDDRAKAQETL AL D+KD++ LL+EFK+ VEDAETIV LTEEM+S D +LLEEA+ +IKDLNK+LDRFELTQLLSGPY+KEGAV++I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   55 FATQESNLSE---SDTSEWVMQDFYTLRKDVEIASARVEEIRASAGLQQLQHEIALLESKATDTSFWDDRAKAQETLSALNDLKDRLRLLSEFKSMVEDAETIVKLTEEMESTDVSLLEEAMAIIKDLNKSLDRFELTQLLSGPYNKEGAVVTITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 289

HSP 2 Score: 282.722 bits (722), Expect = 1.209e-82
Identity = 130/159 (81.76%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLP+++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + L+RLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  287 QTSFSGVEVMPLLPDEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLARLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A087GL93_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G008900 PE=4 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 6.831e-110
Identity = 177/251 (70.52%), Postives = 211/251 (84.06%), Query Frame = -2

Query: 1279 LSSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2031
             SS   R +S + +A  +S LS   E+ T EWVMQDFY LRKDVE+A+ RV EIR SAG+QQ+E ++  LESK +D+SFWDDRA+AQETL +L D+KD+  LL++FK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFE+TQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGE Q+YKT++VE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   42 FSSSTCRLSSPILFAAQESNLSVSDESDTSEWVMQDFYTLRKDVEIATARVEEIRASAGLQQIELDIANLESKASDTSFWDDRAQAQETLSSLNDLKDRFRLLSDFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFEITQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGENQRYKTKIVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 292

HSP 2 Score: 285.419 bits (729), Expect = 1.318e-83
Identity = 132/159 (83.02%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + LSRLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  290 QTSFSGVEVMPLLPEEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLSRLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 448

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RF2_STRPN	1.055e-44	49.68	Peptide chain release factor 2 OS=Streptococcus pn...	[more]
RF2_STRU0	2.135e-44	49.67	Peptide chain release factor 2 OS=Streptococcus ub...	[more]
RF2_CLOP1	3.876e-44	53.33	Peptide chain release factor 2 OS=Clostridium perf...	[more]
RF2_STRA1	6.385e-44	49.67	Peptide chain release factor 2 OS=Streptococcus ag...	[more]
RF2_THEP1	1.720e-43	53.95	Peptide chain release factor 2 OS=Thermotoga petro...	[more]
RF2_THESQ	2.736e-43	53.29	Peptide chain release factor 2 OS=Thermotoga sp. (...	[more]
RF2_STRPG	2.757e-43	49.02	Peptide chain release factor 2 OS=Streptococcus py...	[more]
RF2_THEMA	3.056e-43	53.29	Peptide chain release factor 2 OS=Thermotoga marit...	[more]
RF2_CLOPS	3.355e-43	52.67	Peptide chain release factor 2 OS=Clostridium perf...	[more]
RF2_OENOB	3.640e-42	50.32	Peptide chain release factor 2 OS=Oenococcus oeni ...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0A0LY01_CUCSA	2.034e-115	72.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
Q6ZY50_CUCSA	1.870e-114	72.20	Putative translation releasing factor 2 OS=Cucumis...	[more]
I1L681_SOYBN	1.751e-113	67.66	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2RBJ2_GLYSO	1.751e-113	67.66	Peptide chain release factor 2 OS=Glycine soja GN=...	[more]
A0A067EPJ0_CITSI	2.547e-113	85.65	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
M4FEH3_BRARP	4.460e-112	73.09	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]
A0A078JNZ8_BRANA	1.807e-111	72.69	BnaAnng27520D protein OS=Brassica napus GN=BnaAnng...	[more]
A0A078EZU1_BRANA	1.096e-110	75.63	BnaC06g12020D protein OS=Brassica napus GN=BnaC06g...	[more]
A0A0D3CSR1_BRAOL	1.096e-110	75.63	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
A0A087GL93_ARAAL	6.831e-110	70.52	Uncharacterized protein OS=Arabis alpina GN=AALP_A...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..210
None	No IPR available	GENE3D	1.20.58.410		coord: 98..209 e-value: 6.4E-15 score: 54.6
None	No IPR available	PANTHER	PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	coord: 40..308
None	No IPR available	PANTHER	PTHR11075:SF46	PROTEIN HIGH CHLOROPHYLL FLUORESCENT 109	coord: 40..308
None	No IPR available	SUPERFAMILY	75620	Release factor	coord: 122..309
IPR005139	Peptide chain release factor	SMART	SM00937	PCRF_a_2	coord: 177..289 e-value: 2.3E-44 score: 163.4
IPR005139	Peptide chain release factor	PFAM	PF03462	PCRF	coord: 123..311 e-value: 4.1E-49 score: 166.9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094088 ID=g.barbadense_cottongen_reftransV1_0094088; Name=g.barbadense_cottongen_reftransV1_0094088; organism=Gossypium barbadense; type=contig; length=2365bp
AACAAATTAAATAAGATTCATATGGTACTATTTGAATGGTTAGCAGATAA
ATGGACTCGGATAACAAATAAAATAAGTCGTTCCGAATATTTAAAAAATT
ACAAATATCCGAGCCGCTGTTATTCTTAAATAACTCAAAGAATTTGAGCC
TACATACACAAAAAGGGTATCATATATAAGTTAATCATGAATCACTAAAC
TCTTTAATTAGGCCCCTGTTGTAGTTGCAGTCGCAGTTGCAGTTGCAGAT
ACATTGATACTGTGTTTATATTTAAGGTAAGCTTTGATGAAGGCATCCAA
TTCACCATCCATCACCGATACAATATCCGAAGTCTCGAACCCAGTTCGAA
CATCTTTCACTAGTTTGTAAGGATGGAATACATAGTTTCGTATCTGCTGC
CCCCACTCGGCCTTCACTGCATCTCCCCTTATTTGCTTGATTTCGGATGC
ACGTTGCTCCTCGGCTATCACTAATAACTTGGCTTTTAATCTGCTAAGAG
CCTTGATCTTGTTTGCTAGCTGCGACCTCTCTTCTGTGCAACGAACGGTA
ACACCAGTCGGGATGTGAGTAATCCGAACGGCGGTTTCAACTTTGTTCAC
ATTCTGACCTCCTTTCCCTCCTGCCCTTGAAAATGAAATTTCAAGGTCTT
CCTCAGGTAATTCAACATCTACCGAATCTTCAGGGAGAAGAGGCATTACT
TCAACACCGGAAAAGCTTGTCTGTATATAATCCAATGTAAGCAAATAAAT
GGAGGCAAGGGTTCAATGTGAATGATAAAAGATTCAACAACAACCTGATT
TCTAAACCAAAGGTCTCTATGAGGTTATCGGAAGACAATGATTCTTTTCT
CAAAGGAAAAAGAATAGAGAGGGTTCTGTTCGGAAGAGGATACCAGTCAA
ACTGGTATGAAATAGCATAGCTTTTCTTGAAAGAATTTACAGAAAGCATG
TTGAACTTCCATCAACCGAGGCAAAAAAAACTTCCATCACGTATGCAACA
AGTCTTTCAGGCAAAGTATCAAAACAACCATCTCGTGGCAGCTATTACCG
TGTACATGATCTTCCTAGTGCAACAAATCCACTCACAGTATGGATGCTTA
GAAGCATAATGCAAACAAGTAAAAGATGCAGGAAAATTAACCACTTATTA
TAGAAATTTGAAGCAAAAACGAATGTTGGTCATTGAGATAATCTAATTAT
TGGATAAGAATGGTTAAAAACAATTACCACAAAAGAAGAGAATGAGTCTT
TTCTAAACGTTCAACAAAACATAACAGAAGTTACCTGACGAAGACCTTTA
GCATTGAAAGGAGACTGTCGTACTATACGATGAGTCCCTTTCTCTCCAGA
TAGATAGCCATAAGCATATCTGCCTTCAACTTCAATTGTGACCGACTTAA
TCCCGGCTTCCTCTCCCAATGACTTTTCAACAACCCTTGTCTTATATTTC
TGTTTCTCTCCCCATCTCGTGTACATCCTGAGAAGCATGTCAGCCCAGTC
CTGTGCATCGGTGCCTCCAGCACCAGCAGCTATAGAGATGACTGCACCTT
CTTTGTCATATGGACCAGAAAGAAGTTGAGTCAACTCGAATCTGTCCAAT
GCCTTATTTAGATCTTTAATCACATTGACAGCCTCTTCTAGAAGTGCAGC
ATCTATGGAGTCCATCTCCTCTGTTAGATTAACTATAGTTTCAGCATCTT
CAACCTTCGTTTTAAATTCATTGAGTAAATTTATTTTGTCTTTGACATCA
GTCAGTGCCAAAAGAGTTTCTTGAGCTTTGGCACGATCATCCCAAAATGA
GCTATCAGCTGTTTTTGATTCCAGAACCACGAGTTCCTTTTCTAATTGCT
GCATACCAGCAGATGTTCTAATTTCATTAACGCGTTCTGAGGCCATTTCA
ACATCTTTCCTTAGAGCATAAAAATCTTGCATTACCCATTCTCTTGTACT
GGTTTCTACTCCTTCACTCAATTGGCTATCCGAAGTTGCATATGTAACAG
AAGAAGTGAAACGGGGAGGAGGGGAAGAGAGAATTGCAGAAAAAGGAAAT
GAAGTGGTCGTGAAATGAGTCAGTGATAGCAAAAATGGAGCTTTGTTGAC
GTTCGACAAAGAGAATGGATTTGTGGGTTTTAGAATGGTGGGTGAGCTTA
AAAGAGGGTTTAAAATGGCTTCCATTTTGGGGTTATCGAGGAAAATAGAA
TTTAGCAGTGGAATGTCATCACTTGCTTTGTTTCAACGGTGGTATGTTAG
AATCGCAAATGGATAGAGAAAGAGAGGGAGCAAGACCACCCCTGTAAGCT
CCATAACGGTAAAAGGCCGGTTTCCGGTTGCTTCTAATTAGCTTCTTCTT
TTTTTTTGGTGTAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005139	PCRF

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

Search form

g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

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