g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094088
Unique Name	g.barbadense_cottongen_reftransV1_0094088
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2365

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0094088:1..2355 . Dt08:66632720..66639375 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: PRFB1_ARATH (Peptide chain release factor PrfB1, chloroplastic OS=Arabidopsis thaliana GN=PRFB1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 1.970e-110
Identity = 177/240 (73.75%), Postives = 205/240 (85.42%), Query Frame = -2

Query: 1279 VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1998
            + +A  +S LS   E  T EW+MQDFY LRKDVE+AS RV EIR SA +QQLE+E+  LESK  D+SFWDDR KAQETL +L D+KD++ LL+EFKT VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LD+FELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT+VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   56 IVFAAQESNLSVSNENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 295

HSP 2 Score: 291.582 bits (745), Expect = 9.369e-88
Identity = 134/159 (84.28%), Postives = 151/159 (94.97%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKL+VIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  293 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 451

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_SYNY3 (Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfB PE=3 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 9.054e-67
Identity = 106/157 (67.52%), Postives = 133/157 (84.71%), Query Frame = -2

Query:  253 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSIN 723
            QTSF+GVEVMPLL E+++ +++P++DL+IS SRAGGKGGQNVNKVETAVRI H+PTG+ VRCT+ERSQL NK KAL+ LKAKLL++ EEQRA  I +IRGD V+A WG QIRNYVFHPY+LVKD+RT  ET+D+  VMDGEL  FI+AYL++   ++
Sbjct:  215 QTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVRIVHLPTGLAVRCTQERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVEAAWGTQIRNYVFHPYQLVKDLRTNVETTDVGGVMDGELSDFIEAYLRHSARLD 371

HSP 2 Score: 194.512 bits (493), Expect = 1.999e-53
Identity = 109/212 (51.42%), Postives = 146/212 (68.87%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            L++++E+ S R+ + +    +  L+ ++  LE   A   FWDD  +AQ+ L  L + K ++     ++ + +D++ IV L E  D  D ALL EA   ++ L K LDR+EL QLLSGPYD +GA ++I AGAGGTDAQDWA+MLLRMYTRW EKQ YK  + E S G+EAG+KSVT+E+EGRYAYGYL  EKGTHR+VR SPFNA G RQ +
Sbjct:    8 LKRNLELISSRLGQTQDYLDLPGLKAKVQDLEQCAAQPDFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED--DQALLTEAETTLEQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVRISPFNANGKRQTS 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_SYNPX (Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.103e-63
Identity = 105/154 (68.18%), Postives = 130/154 (84.42%), Query Frame = -2

Query:  271 DYIQTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 732
            D  QTSF+G+EVMP + E+ VD+++PE+DLE++ SR+GG GGQNVNKVETAVRI HIPTG+ VRCT+ERSQL NK KA++ LKAKLLVIA+EQRA+EI  IRGD V+A WG QIRNYVFHPY++VKD+RT  ET+D+ +VMDG LD FI A L+
Sbjct:  210 DKRQTSFAGIEVMPKIDEE-VDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIRGDIVEAAWGNQIRNYVFHPYQMVKDLRTSEETNDVQAVMDGALDPFIDASLR 362

HSP 2 Score: 173.326 bits (438), Expect = 4.226e-46
Identity = 106/216 (49.07%), Postives = 135/216 (62.50%), Query Frame = -2

Query: 1279 DFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1926
            D    ++D+   ++R+   +    +  L+     LE   A   FWDD+  AQ+ +  L +VK ++  L ++   V+DA+  + L E     D  +L EA   +  L + LDR+EL +LLSG YDKEGAV++I AGAGGTDAQDWA MLLRMYTRW E    K  V E S GEEAGIKS TIEVEGRYAYGYL  EKGTHR+VR SPFNA   RQ +
Sbjct:    2 DLTDFKRDLSELTDRLGHAQDCLDVPALKARQQDLEQLAAQPDFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLELYEL--EPDEEMLTEAQEGLNQLRQGLDRWELERLLSGDYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVRISPFNANDKRQTS 215

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_CYAP8 (Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801) GN=prfB PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.428e-59
Identity = 104/151 (68.87%), Postives = 130/151 (86.09%), Query Frame = -2

Query:  271 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLK 723
            QTSF+G+EVMP L E+ + VE+PE+DLEI+ +R+GGKGGQNVNKVETAVR+ H+PTG+ VRCT+ERSQL NK KAL+ LKAKLL+IA+EQRA  I +IRGD V+A WG QIRNYVFHPY++VKDVRT  ET+D+  VMDG+LD FI++YL+
Sbjct:  213 QTSFAGIEVMPALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDVRTNTETTDVNGVMDGKLDLFIESYLR 363

HSP 2 Score: 188.348 bits (477), Expect = 2.414e-51
Identity = 107/212 (50.47%), Postives = 144/212 (67.92%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            L+++++  + R+ + +    +  L   +  LE   A   FWD++  AQ+TL  L D+K  +   +++  ++ED + I  L E  +  DA L EEA   +  LN  LDR+EL +LLSG YD +GAV++I AGAGGTDAQDWA+MLLRMYTRWGE+Q YK  + E S G+EAGIKS T+E+EGRYAYGYL GEKGTHR+VR SPFNA G RQ +
Sbjct:    6 LKREIQQIAARLGKTQDYLDLPALNANIQDLEQIAAQPDFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE--DATLNEEAEANLTQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKVHLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVRISPFNANGKRQTS 215

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_SULSY (Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=prfB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.880e-48
Identity = 87/153 (56.86%), Postives = 113/153 (73.86%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSFS V V+P + ED + VE+ EEDL I   RA G GGQ+VNK ++AVRITHIPTG+ V C  ERSQL NK+KA + LKAKL  +  E+R  + K++ G+     WG QIR+YVF PY++VKD+RTGFET +I +VMDGE+D FI++YLK+K
Sbjct:  213 HTSFSAVSVIPEIDED-IKVEINEEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVACQSERSQLQNKLKATNMLKAKLYQLELEKRKEKQKELEGEKKDITWGSQIRSYVFQPYQMVKDLRTGFETGNIEAVMDGEIDDFIESYLKWK 364

HSP 2 Score: 111.309 bits (277), Expect = 9.064e-25
Identity = 78/207 (37.68%), Postives = 121/207 (58.45%), Query Frame = -2

Query: 1279 EMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1899
            E   E+ + ++     ++LE+E+  L+   AD +FW+D  KAQE       + +K+  +     KV +    + L E M+  D  L  E    +K++ K + R EL  LLS   D + A++++ AG+GG +A DW +MLLRMYTRW EK+ Y+  +V+    + AG+KS T+ ++G YAYGYL GE+G HR+VR SPF+A   R  +
Sbjct:   11 EEIKEKWDNLKEILKPEKLEEEIKQLDDLMADPNFWNDTKKAQEISSRRNYLGEKLEEILTVDKKVNNLLDYITLLE-MEE-DQELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNAILTVQAGSGGVEACDWTEMLLRMYTRWAEKRGYQVELVDFQPDDVAGVKSATLIIKGPYAYGYLKGEQGVHRLVRISPFDANKRRHTS 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_AQUAE (Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5) GN=prfB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.068e-47
Identity = 86/153 (56.21%), Postives = 111/153 (72.55%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ V VMP + ED + +E+  EDL+I   RA G GGQ VNK +TAVRITHIPTG+TV C +ERSQ  NK KAL  LKAKL  +  ++   + KQ  G+     WG QIR+YVFHPYKL+KD+RTG+ET ++ +VMDGE+D FI++YLK+K
Sbjct:  212 HTSFAAVSVMPQIDED-IKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRITHIPTGITVSCQQERSQYQNKRKALELLKAKLYQLEMKKLEEKKKQYEGEKTDIGWGHQIRSYVFHPYKLIKDLRTGYETGNVEAVMDGEIDEFIESYLKWK 363

HSP 2 Score: 145.591 bits (366), Expect = 3.259e-36
Identity = 86/212 (40.57%), Postives = 134/212 (63.21%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            L+  VE   +R+ +++     ++LE EL  L+ K ++ +FW+D+ KA++ +     V++ +N L   +  V+D E +V +T E D+   A+++E    IK++ + L   EL   LSG  D + A ++I AGAGGT+A DWADML RMY RW EK+ Y+  +++ +  + AGIKSVT+ V+G YAYGYL GE+G HR+VR SPF+A   R  +
Sbjct:    6 LKGKVEELRKRLEDVKKILSPEKLESELKELDQKMSEPNFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEITSEEDTETWAMMDEE---IKEVERTLRELELKTYLSGEMDAKNAYLTIQAGAGGTEACDWADMLFRMYKRWAEKKGYEVELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRISPFDANARRHTS 214

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LACLA (Peptide chain release factor 2 OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=prfB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 5.790e-47
Identity = 79/153 (51.63%), Postives = 115/153 (75.16%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ V+VMP L +DS++V++ + D+++   R+GG GGQNVNKV T VR+THIPTG+ V+ T +R+Q  N+ KA++ LK+KL  +  +++ +E+ ++RGD  +  WG QIR+YVF PY+LVKD RTG+ET  I +VMDGELD FI AYL++ 
Sbjct:  213 HTSFTSVDVMPEL-DDSIEVDVRDADVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQSEISWGSQIRSYVFMPYQLVKDTRTGYETGQISNVMDGELDGFINAYLRWN 364

HSP 2 Score: 140.584 bits (353), Expect = 1.502e-34
Identity = 83/213 (38.97%), Postives = 129/213 (60.56%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVN-LTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R  +E  +E++N  R S  +++LE+E+ +LE+  A   FW+D+A AQ+ +     +K K +        +E+A+T++  L EE D    A LEE       L + ++ +EL  +L+ PYD   AV+ I  G+GGT++QDW  ML+RMYTRWGE   +K  +++   G+ AG+KSV +   GR AYG+L GEKG HR+VR SPF++   R  +
Sbjct:    6 IRNLLEGYAEKINGFRESLDLERLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAKYDNYQAMNNMLEEAQTMLEMLQEEADEEMQAELEEMTIA---LGQKIESYELEIMLNQPYDHMNAVLEIHPGSGGTESQDWGSMLMRMYTRWGEAHGFKVEILDYQDGDVAGLKSVALRFVGRNAYGFLRGEKGVHRLVRISPFDSANRRHTS 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LACLM (Peptide chain release factor 2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=prfB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.664e-47
Identity = 78/153 (50.98%), Postives = 115/153 (75.16%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ V+VMP L +DS++VE+ + D+++   R+GG GGQNVNKV T VR+TH+PTG+ V+ T +R+Q  N+ KA++ LK+KL  +  +++ +E+ ++RGD  +  WG QIR+YVF PY+LVKD RTG+ET  I +VMDGE+D FI AYL++ 
Sbjct:  213 HTSFTSVDVMPEL-DDSIEVEVRDADVKMDTFRSGGAGGQNVNKVSTGVRLTHVPTGIVVQSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQSEISWGSQIRSYVFMPYQLVKDTRTGYETGQISNVMDGEIDGFINAYLRWN 364

HSP 2 Score: 143.665 bits (361), Expect = 1.337e-35
Identity = 85/213 (39.91%), Postives = 128/213 (60.09%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVN-LTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R  +E  SE++N  R S  + +LE+E+ +LE+  A   FW+D+A AQ+ +     +K K +      T +E+A+T++  L EE D      LEE       L + ++ +EL  +L+ PYD   AV+ I  G+GGT++QDW  ML+RMYTRWGE   +K  +++   G+ AG+KSV I   GR AYG+L GEKG HR+VR SPF++   R  +
Sbjct:    6 IRNLLEGYSEKINGFRDSLDLDRLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAKYDNYQAMNTMLEEAQTMLEMLQEEADEDMQVELEEMTTA---LGQKIESYELEIMLNQPYDHMNAVLEIHPGSGGTESQDWGSMLMRMYTRWGEAHGFKVEILDYQDGDVAGLKSVAIRFVGRNAYGFLRGEKGVHRLVRISPFDSANRRHTS 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_LACLS (Peptide chain release factor 2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prfB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 9.101e-47
Identity = 78/153 (50.98%), Postives = 115/153 (75.16%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ V+VMP L +DS++VE+ + D+++   R+GG GGQNVNKV T VR+TH+PTG+ V+ T +R+Q  N+ KA++ LK+KL  +  +++ +E+ ++RGD  +  WG QIR+YVF PY+LVKD RTG+ET  I +VMDGE+D FI AYL++ 
Sbjct:  213 HTSFTSVDVMPEL-DDSIEVEVRDADVKMDTFRSGGAGGQNVNKVSTGVRLTHVPTGIVVQSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQSEISWGSQIRSYVFMPYQLVKDTRTGYETGQISNVMDGEIDGFINAYLRWN 364

HSP 2 Score: 141.739 bits (356), Expect = 5.589e-35
Identity = 84/213 (39.44%), Postives = 127/213 (59.62%), Query Frame = -2

Query: 1279 LRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVN-LTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1914
            +R  +E  SE++N  R S  + +LE+E+ +LE+  A   FW+D+A AQ+ +     +K K +        +E+A+T++  L EE D      LEE       L + ++ +EL  +L+ PYD   AV+ I  G+GGT++QDW  ML+RMYTRWGE   +K  +++   G+ AG+KSV I   GR AYG+L GEKG HR+VR SPF++   R  +
Sbjct:    6 IRNLLEGYSEKINGFRDSLDLDRLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAKYDNYQAMNNMLEEAQTMLEMLQEEADEDMQVELEEMTTA---LGQKIESYELEIMLNQPYDHMNAVLEIHPGSGGTESQDWGSMLMRMYTRWGEAHGFKVEILDYQDGDVAGLKSVAIRFVGRNAYGFLRGEKGVHRLVRISPFDSANRRHTS 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Match: RF2_STRGC (Peptide chain release factor 2 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=prfB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.764e-45
Identity = 77/153 (50.33%), Postives = 114/153 (74.51%), Query Frame = -2

Query:  265 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYK 723
             TSF+ VEVMP L +D+++VE+ E+D+++   R+GG GGQNVNKV T VR+THIPTG+ V+ T +R+Q  N+ +A+  L+AKL  + +E++A+E+  ++GD  +  WG QIR+YVF PY +VKD RT +E + +  VMDG+LD FI AYLK++
Sbjct:  211 HTSFTSVEVMPEL-DDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEISWGSQIRSYVFTPYTMVKDHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 362

HSP 2 Score: 138.658 bits (348), Expect = 5.844e-34
Identity = 82/216 (37.96%), Postives = 128/216 (59.26%), Query Frame = -2

Query: 1279 DFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1926
            D   +R+ ++   E++   R S  ++ LE+E+ +LE+K  +  FWDD   AQ+T   L ++K      ++     +++E +++   E DS+   L E+   +     K +  +E+T LLS PYD   A++ I  G+GGT+AQDW DMLLRMYTR+G  + +K  V++   G+EAGIKSVT+  EG +AYG L  E G HR+VR SPF++   R  +
Sbjct:    2 DISEIRQKIDANREKLASFRGSLDLEGLEEEIAILENKMTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTDLFDESEILLDFLAEDDSVQEELEEKLAEL----EKMMTSYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTS 213

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: V4K6J8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10004205mg PE=4 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 6.923e-110
Identity = 180/245 (73.47%), Postives = 207/245 (84.49%), Query Frame = -2

Query: 1279 RFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2013
            R  S + +A  +S LS   E+ T EW MQDFY LRKDVE+AS RV EIR S+G+QQ+E E+ +LESK  D+SFWDDRAKAQETL AL D+KD+  LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFELTQLLSGPYD+EGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT VVE S GEEAGIKS T+E+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   45 RLISPLLFAAQESNLSVSNESDTIEWQMQDFYTLRKDVEVASARVEEIRASSGLQQIENEISILESKATDTSFWDDRAKAQETLSALNDLKDRSRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDQEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTNVVEMSAGEEAGIKSATLEIEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTS 289

HSP 2 Score: 286.189 bits (731), Expect = 5.457e-84
Identity = 133/159 (83.65%), Postives = 148/159 (93.08%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V VE+PEEDLEI+F+RAGGKGGQNVNKVETAVRITHIPTGV VRC+EERSQ ANK + LSRLKAKLLVIAEEQRA+EIK+IRGD VKAEWGQQIRNYVFHPYKLVKDVRT  ETSDI SVMDG+LD FIKAYLK+K+S+ ++
Sbjct:  287 QTSFSGVEVMPLLPEEAVGVEIPEEDLEITFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCSEERSQSANKTRGLSRLKAKLLVIAEEQRATEIKEIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTSHETSDITSVMDGDLDPFIKAYLKHKYSLAMA 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: F4K2X9_ARATH (Protein high chlorophyll fluorescent 109 OS=Arabidopsis thaliana GN=HCF109 PE=4 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 1.618e-109
Identity = 177/240 (73.75%), Postives = 205/240 (85.42%), Query Frame = -2

Query: 1279 VTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1998
            + +A  +S LS   E  T EW+MQDFY LRKDVE+AS RV EIR SA +QQLE+E+  LESK  D+SFWDDR KAQETL +L D+KD++ LL+EFKT VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LD+FELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT+VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   56 IVFAAQESNLSVSNENETSEWLMQDFYTLRKDVEIASARVEEIRASANLQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 295

HSP 2 Score: 125.176 bits (313), Expect = 2.305e-27
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = -2

Query:  532 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTE 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCT+
Sbjct:  293 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTD 356

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: R0F555_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004691mg PE=4 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.170e-109
Identity = 179/241 (74.27%), Postives = 206/241 (85.48%), Query Frame = -2

Query: 1279 SVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2001
            SV +A  +S LS   E+ T EWVMQDFY LRKDVE+AS RV EIR SAG+ QLE+E+  LESK  D+SFWDDR KAQETL +L D+KD++ LL+EFK+ VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YK +VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   84 SVVFAAQESNLSVSNESETSEWVMQDFYTLRKDVEIASARVEEIRDSAGLTQLEQEIANLESKATDTSFWDDRVKAQETLSSLNDLKDRMRLLSEFKSMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKIKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 324

HSP 2 Score: 292.352 bits (747), Expect = 9.182e-86
Identity = 135/159 (84.91%), Postives = 151/159 (94.97%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKLLVIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  322 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLLVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 480

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: D7MI02_ARALL (HCF109 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493658 PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 4.893e-109
Identity = 179/237 (75.53%), Postives = 204/237 (86.08%), Query Frame = -2

Query: 1279 ATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 1989
            A  +S LS   E  T EW+MQDFY LRKDVE+AS RV EIR SAG++QLE+E+  LESK  D+SFWDDR KAQETL AL D+KD++ LL+EFKT VEDAETIV LTEEMDS D +LLEEA+ +IK+LNK+LDRFELTQLLSGPYDKEGAV+ I AGAGGTDAQDWADMLLRMY RWGEKQ+YKT+VVE S GEEAGIKS T+E+EGRYAYGY+SGEKGTHRIVRQSPFN+KGLRQ +
Sbjct:   56 AAQESNLSVSNENETSEWLMQDFYTLRKDVEIASARVEEIRASAGLEQLEQEIANLESKATDTSFWDDRTKAQETLSALNDLKDRMRLLSEFKTMVEDAETIVKLTEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTS 292

HSP 2 Score: 292.352 bits (747), Expect = 3.337e-86
Identity = 135/159 (84.91%), Postives = 151/159 (94.97%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSGVEVMPLLPE++V +E+PEEDL+ISF+RAGGKGGQNVNKVETAVRITHIPTGV VRCTEERSQLANK +AL RLKAKLLVIAEEQRA+EIK+IRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG ETSDI SVMDG+LD FIKAYLK+K+++ ++
Sbjct:  290 QTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLLVIAEEQRATEIKEIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMA 448

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Match: A0A068U7C9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_12 OS=Coffea canephora GN=GSCOC_T00017482001 PE=4 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.731e-108
Identity = 181/250 (72.40%), Postives = 206/250 (82.40%), Query Frame = -2

Query: 1279 SSPPPRFTSSVTYATSDSQLSEGVETSTREWVMQDFYALRKDVEMASERVNEIRTSAGMQQLEKELVVLESKTADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVNLTEEMDSIDAALLEEAVNVIKDLNKALDRFELTQLLSGPYDKEXXXXXXXXXXXGTDAQDWADMLLRMYTRWGEKQKYKTRVVEKSLGEEAGIKSVTIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQVT 2028
            ++ PP F S      +  ++  GV T T EW M DFY LR++VE+ SERV EIR +AG++QLE++L  LE    DSS WDDRAKAQE L  LTDV+D++ LLN+FK ++EDAETIV LTEEMDSID  LLEEAV++IKDLNKALD FE TQLLSGPYDKEGAVI+I AGAGGTDAQDWADMLLRMY RW EKQKYKT+VVEKSLG+EAGIKS TIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQ +
Sbjct:   77 ATHPPAFLSGSKVLLAAPEV--GVSTETSEWAMPDFYTLRRNVEVTSERVEEIRAAAGLKQLEEDLAKLEDAAVDSSLWDDRAKAQEILQDLTDVRDRMKLLNDFKAQIEDAETIVKLTEEMDSIDTGLLEEAVSIIKDLNKALDHFEFTQLLSGPYDKEGAVINITAGAGGTDAQDWADMLLRMYVRWAEKQKYKTKVVEKSLGDEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS 324

HSP 2 Score: 303.138 bits (775), Expect = 7.042e-90
Identity = 144/159 (90.57%), Postives = 154/159 (96.86%), Query Frame = -2

Query:  247 QTSFSGVEVMPLLPEDSVDVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIVSVMDGELDAFIKAYLKYKHSINVS 723
            QTSFSG+EVMPL+PE S+DVE+PEEDLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEER+QLANKIKAL RLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTG+ETSDI SVMDGELD FIK+YLKYK+S +VS
Sbjct:  322 QTSFSGIEVMPLIPE-SMDVEIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERTQLANKIKALGRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETSDITSVMDGELDLFIKSYLKYKYSTSVS 479

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PRFB1_ARATH	1.970e-110	73.75	Peptide chain release factor PrfB1, chloroplastic ...	[more]
RF2_SYNY3	9.054e-67	67.52	Peptide chain release factor 2 OS=Synechocystis sp...	[more]
RF2_SYNPX	3.103e-63	68.18	Peptide chain release factor 2 OS=Synechococcus sp...	[more]
RF2_CYAP8	1.428e-59	68.87	Peptide chain release factor 2 OS=Cyanothece sp. (...	[more]
RF2_SULSY	1.880e-48	56.86	Peptide chain release factor 2 OS=Sulfurihydrogeni...	[more]
RF2_AQUAE	4.068e-47	56.21	Peptide chain release factor 2 OS=Aquifex aeolicus...	[more]
RF2_LACLA	5.790e-47	51.63	Peptide chain release factor 2 OS=Lactococcus lact...	[more]
RF2_LACLM	8.664e-47	50.98	Peptide chain release factor 2 OS=Lactococcus lact...	[more]
RF2_LACLS	9.101e-47	50.98	Peptide chain release factor 2 OS=Lactococcus lact...	[more]
RF2_STRGC	1.764e-45	50.33	Peptide chain release factor 2 OS=Streptococcus go...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094088 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4K6J8_EUTSA	6.923e-110	73.47	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
F4K2X9_ARATH	1.618e-109	73.75	Protein high chlorophyll fluorescent 109 OS=Arabid...	[more]
R0F555_9BRAS	4.170e-109	74.27	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
D7MI02_ARALL	4.893e-109	75.53	HCF109 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
A0A068U7C9_COFCA	3.731e-108	72.40	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 190..210
None	No IPR available	GENE3D	1.20.58.410		coord: 98..209 e-value: 6.4E-15 score: 54.6
None	No IPR available	PANTHER	PTHR11075	PEPTIDE CHAIN RELEASE FACTOR	coord: 40..308
None	No IPR available	PANTHER	PTHR11075:SF46	PROTEIN HIGH CHLOROPHYLL FLUORESCENT 109	coord: 40..308
None	No IPR available	SUPERFAMILY	75620	Release factor	coord: 122..309
IPR005139	Peptide chain release factor	SMART	SM00937	PCRF_a_2	coord: 177..289 e-value: 2.3E-44 score: 163.4
IPR005139	Peptide chain release factor	PFAM	PF03462	PCRF	coord: 123..311 e-value: 4.1E-49 score: 166.9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094088 ID=g.barbadense_cottongen_reftransV1_0094088; Name=g.barbadense_cottongen_reftransV1_0094088; organism=Gossypium barbadense; type=contig; length=2365bp
AACAAATTAAATAAGATTCATATGGTACTATTTGAATGGTTAGCAGATAA
ATGGACTCGGATAACAAATAAAATAAGTCGTTCCGAATATTTAAAAAATT
ACAAATATCCGAGCCGCTGTTATTCTTAAATAACTCAAAGAATTTGAGCC
TACATACACAAAAAGGGTATCATATATAAGTTAATCATGAATCACTAAAC
TCTTTAATTAGGCCCCTGTTGTAGTTGCAGTCGCAGTTGCAGTTGCAGAT
ACATTGATACTGTGTTTATATTTAAGGTAAGCTTTGATGAAGGCATCCAA
TTCACCATCCATCACCGATACAATATCCGAAGTCTCGAACCCAGTTCGAA
CATCTTTCACTAGTTTGTAAGGATGGAATACATAGTTTCGTATCTGCTGC
CCCCACTCGGCCTTCACTGCATCTCCCCTTATTTGCTTGATTTCGGATGC
ACGTTGCTCCTCGGCTATCACTAATAACTTGGCTTTTAATCTGCTAAGAG
CCTTGATCTTGTTTGCTAGCTGCGACCTCTCTTCTGTGCAACGAACGGTA
ACACCAGTCGGGATGTGAGTAATCCGAACGGCGGTTTCAACTTTGTTCAC
ATTCTGACCTCCTTTCCCTCCTGCCCTTGAAAATGAAATTTCAAGGTCTT
CCTCAGGTAATTCAACATCTACCGAATCTTCAGGGAGAAGAGGCATTACT
TCAACACCGGAAAAGCTTGTCTGTATATAATCCAATGTAAGCAAATAAAT
GGAGGCAAGGGTTCAATGTGAATGATAAAAGATTCAACAACAACCTGATT
TCTAAACCAAAGGTCTCTATGAGGTTATCGGAAGACAATGATTCTTTTCT
CAAAGGAAAAAGAATAGAGAGGGTTCTGTTCGGAAGAGGATACCAGTCAA
ACTGGTATGAAATAGCATAGCTTTTCTTGAAAGAATTTACAGAAAGCATG
TTGAACTTCCATCAACCGAGGCAAAAAAAACTTCCATCACGTATGCAACA
AGTCTTTCAGGCAAAGTATCAAAACAACCATCTCGTGGCAGCTATTACCG
TGTACATGATCTTCCTAGTGCAACAAATCCACTCACAGTATGGATGCTTA
GAAGCATAATGCAAACAAGTAAAAGATGCAGGAAAATTAACCACTTATTA
TAGAAATTTGAAGCAAAAACGAATGTTGGTCATTGAGATAATCTAATTAT
TGGATAAGAATGGTTAAAAACAATTACCACAAAAGAAGAGAATGAGTCTT
TTCTAAACGTTCAACAAAACATAACAGAAGTTACCTGACGAAGACCTTTA
GCATTGAAAGGAGACTGTCGTACTATACGATGAGTCCCTTTCTCTCCAGA
TAGATAGCCATAAGCATATCTGCCTTCAACTTCAATTGTGACCGACTTAA
TCCCGGCTTCCTCTCCCAATGACTTTTCAACAACCCTTGTCTTATATTTC
TGTTTCTCTCCCCATCTCGTGTACATCCTGAGAAGCATGTCAGCCCAGTC
CTGTGCATCGGTGCCTCCAGCACCAGCAGCTATAGAGATGACTGCACCTT
CTTTGTCATATGGACCAGAAAGAAGTTGAGTCAACTCGAATCTGTCCAAT
GCCTTATTTAGATCTTTAATCACATTGACAGCCTCTTCTAGAAGTGCAGC
ATCTATGGAGTCCATCTCCTCTGTTAGATTAACTATAGTTTCAGCATCTT
CAACCTTCGTTTTAAATTCATTGAGTAAATTTATTTTGTCTTTGACATCA
GTCAGTGCCAAAAGAGTTTCTTGAGCTTTGGCACGATCATCCCAAAATGA
GCTATCAGCTGTTTTTGATTCCAGAACCACGAGTTCCTTTTCTAATTGCT
GCATACCAGCAGATGTTCTAATTTCATTAACGCGTTCTGAGGCCATTTCA
ACATCTTTCCTTAGAGCATAAAAATCTTGCATTACCCATTCTCTTGTACT
GGTTTCTACTCCTTCACTCAATTGGCTATCCGAAGTTGCATATGTAACAG
AAGAAGTGAAACGGGGAGGAGGGGAAGAGAGAATTGCAGAAAAAGGAAAT
GAAGTGGTCGTGAAATGAGTCAGTGATAGCAAAAATGGAGCTTTGTTGAC
GTTCGACAAAGAGAATGGATTTGTGGGTTTTAGAATGGTGGGTGAGCTTA
AAAGAGGGTTTAAAATGGCTTCCATTTTGGGGTTATCGAGGAAAATAGAA
TTTAGCAGTGGAATGTCATCACTTGCTTTGTTTCAACGGTGGTATGTTAG
AATCGCAAATGGATAGAGAAAGAGAGGGAGCAAGACCACCCCTGTAAGCT
CCATAACGGTAAAAGGCCGGTTTCCGGTTGCTTCTAATTAGCTTCTTCTT
TTTTTTTGGTGTAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005139	PCRF

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006415	translational termination

Vocabulary: **Molecular Function**
Term	Definition
GO:0016149	translation release factor activity, codon specific

Search form

g.barbadense_cottongen_reftransV1_0094088, g.barbadense_cottongen_reftransV1_0094088 (contig) Gossypium barbadense

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