g.barbadense_cottongen_reftransV1_0093858, g.barbadense_cottongen_reftransV1_0093858 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: U5GAT0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12260g PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.441e-48 Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = -1 Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLK-AGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1580 LYT STVVLVL+ +YYD++YRW +CR+ K + V+D++ PLK SGI IP+AS + PRR++YYMSARSLAGS TPP R+Y+RAAKSGPSA+ LD+ SSS+DE+A VS + +QPRPIPRS Sbjct: 90 LYTTSTVVLVLQGLYYDHVYRWCRCRKTKDNQQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKSGPSAVGLDNESSSDDEAAAPVSVSNTVSQPRPIPRS 216 HSP 2 Score: 67.3958 bits (163), Expect = 8.441e-48 Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = -1 Query: 816 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923 LL E HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 248 LLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNI 284 HSP 3 Score: 49.2914 bits (116), Expect = 8.441e-48 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 1010 RMNDQVANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1129 R + A YGTFLA S+NLPL SKA +A G+T RRLLH Sbjct: 211 RPIPRSAGYGTFLATSLNLPLQSKALTQAYIGYTGRRLLH 250 HSP 4 Score: 132.494 bits (332), Expect = 1.298e-29 Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKE KPC WVE+YFKDCLC+LKD+ SF FGL SLVCWGVA+IPQIITNF+TKSSHGVSL FLLTWV G Sbjct: 2 SLAYCVKEQKPCVRWVEKYFKDCLCSLKDEFSFTFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAG 75 HSP 5 Score: 60.4622 bits (145), Expect = 1.216e-9 Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = -1 Query: 294 IMSSFAL--NVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 422 +M FAL N+ + SI+ RT+EW++IKPNMPWLLDAA+CVALD + Sbjct: 295 LMFVFALVANLTYVLSIVARTTEWDSIKPNMPWLLDAAVCVALDFFI 341 HSP 6 Score: 31.9574 bits (71), Expect = 1.216e-9 Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = -3 Query: 136 IILQYMYYSFFRET-VNSDAEDYGDHMDASK 225 IILQY+YY +F E V+ + YGD++DASK Sbjct: 341 IILQYIYYRYFLEKRVDHEECYYGDYVDASK 371
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2TYS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-46 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1 Query: 816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923 LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 127 LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 162 HSP 2 Score: 81.2629 bits (199), Expect = 1.388e-46 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = -1 Query: 1200 SARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVS 1376 SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV+ Sbjct: 38 SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSVA 96 HSP 3 Score: 73.559 bits (179), Expect = 1.388e-46 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH Sbjct: 95 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 129 HSP 4 Score: 71.633 bits (174), Expect = 1.154e-24 Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 Query: 294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389 SILVRTSEWENIKPNMPWLLDAAICVALDLV+ Sbjct: 188 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 219 HSP 5 Score: 71.633 bits (174), Expect = 1.154e-24 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3 Query: 130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI Sbjct: 219 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 250
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2PQ84_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.437e-46 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1 Query: 816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923 LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 113 LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 148 HSP 2 Score: 80.8777 bits (198), Expect = 1.437e-46 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = -1 Query: 1200 SARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVS 1376 SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV+ Sbjct: 24 SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSVA 82 HSP 3 Score: 73.9442 bits (180), Expect = 1.437e-46 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH Sbjct: 81 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 115 HSP 4 Score: 71.633 bits (174), Expect = 1.176e-24 Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 Query: 294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389 SILVRTSEWENIKPNMPWLLDAAICVALDLV+ Sbjct: 174 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 205 HSP 5 Score: 71.633 bits (174), Expect = 1.176e-24 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3 Query: 130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI Sbjct: 205 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 236
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A059AS69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02478 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.082e-46 Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = -1 Query: 1203 LPDFACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLK-AGKPGSGIPIPRASQKP-----NPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSV 1601 LP QLYTASTVVLVL+S+YYD++Y WK R IK + +EK+PLK GI IP A+ K +PR+E++Y SARSLAGSGTPP RTY+R AKSGPS + LDS SSS+DE+A V S KS ++P+ IPRSV Sbjct: 17 LPSVLEQLYTASTVVLVLQSLYYDHVYSLWKGRHIKKPDPQAEEKEPLKPKATHQMGIAIPGAAAKATPVKASPRKEFFYTSARSLAGSGTPPFRTYIRVAKSGPSTVHLDSDSSSDDEAARVPSTKSVSKPKQIPRSV 155 HSP 2 Score: 74.7146 bits (182), Expect = 3.082e-46 Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = -1 Query: 816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923 LLQE + HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 186 LLQEGGIEHSVFGQWLGWLMAAIYMGGRIPQIWLNI 221 HSP 3 Score: 36.1946 bits (82), Expect = 3.082e-46 Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = -2 Query: 1010 YGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1105 YGTFLA+S+ LPL +K++ EA ++R+LL Sbjct: 157 YGTFLASSLTLPLQNKSFTEAHVVLSTRKLLQ 188 HSP 4 Score: 60.4622 bits (145), Expect = 3.638e-11 Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = -1 Query: 294 IMSSFAL--NVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 422 +M FAL NV + SILVRT EWE+I+ NMPWLLDA +CVALDL + Sbjct: 232 LMFIFALVANVTYVGSILVRTVEWESIEANMPWLLDAIVCVALDLFI 278 HSP 5 Score: 36.965 bits (84), Expect = 3.638e-11 Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = -3 Query: 136 IILQYMYYSFFRETVNSDAEDYGDHMDASK 225 IILQY+YY +FR + NSD E G + +A K Sbjct: 278 IILQYIYYRYFRRSENSDKEGLGHYEEAGK 307
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: W9RK91_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009167 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.405e-46 Identity = 84/132 (63.64%), Postives = 99/132 (75.00%), Query Frame = -1 Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVE-DEKKPLKAGKPG--SGIPIPRASQKPN---PRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1580 LYT STVVLVL+SIYYD+IYRW K R+ E D++KPL KP SGIPIPR S K + PRRE+YY SARSLAGSGTPP RTY+RAA+SGPSAM ++S SSS+DE+ + S KS TQPRPIP+S Sbjct: 118 LYTTSTVVLVLQSIYYDHIYRWCKRRKTTTKQSTEEDQRKPLNNSKPADESGIPIPRPSTKASSGTPRREFYYTSARSLAGSGTPPFRTYLRAARSGPSAMAIESDSSSDDEATVPLRSNKSTTQPRPIPKS 249 HSP 2 Score: 63.1586 bits (152), Expect = 3.405e-46 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = -1 Query: 819 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN 923 L Q +H+ +GQWLGW+MAAIYMGGR+PQIWLN Sbjct: 284 LQQSGGENHTVYGQWLGWMMAAIYMGGRLPQIWLN 318 HSP 3 Score: 37.3502 bits (85), Expect = 3.405e-46 Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = -2 Query: 1013 YGTFLAASINLPLGSKAWMEARSGFTSRRLL 1105 YGTFLAAS+NLPL S + + G +R+LL Sbjct: 253 YGTFLAASVNLPLKSNSLTQVYMGVAARKLL 283 HSP 4 Score: 130.183 bits (326), Expect = 1.098e-28 Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = -2 Query: 2180 AYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2395 +YCV+ENK C WVE+YF+DCLCNLKD+ SF FGL SLVCWGVA+IPQIITNF+TKSSHGVSL FLLTWV G Sbjct: 4 SYCVEENKACVGWVEKYFQDCLCNLKDEFSFAFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAG 75 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093858 ID=g.barbadense_cottongen_reftransV1_0093858; Name=g.barbadense_cottongen_reftransV1_0093858; organism=Gossypium barbadense; type=contig; length=2813bpback to top |