g.barbadense_cottongen_reftransV1_0093858, g.barbadense_cottongen_reftransV1_0093858 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0093858
Unique Nameg.barbadense_cottongen_reftransV1_0093858
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2813
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt12chromosomeg.barbadense_cottongen_reftransV1_0093858:1..2813 .
Dt12:13272354..13276650 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: U5GAT0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12260g PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.441e-48
Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = -1
Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLK-AGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1580
            LYT STVVLVL+ +YYD++YRW +CR+ K +  V+D++ PLK      SGI IP+AS +  PRR++YYMSARSLAGS TPP R+Y+RAAKSGPSA+ LD+ SSS+DE+A  VS   + +QPRPIPRS
Sbjct:   90 LYTTSTVVLVLQGLYYDHVYRWCRCRKTKDNQQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKSGPSAVGLDNESSSDDEAAAPVSVSNTVSQPRPIPRS 216          

HSP 2 Score: 67.3958 bits (163), Expect = 8.441e-48
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = -1
Query:  816 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL E     HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  248 LLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNI 284          

HSP 3 Score: 49.2914 bits (116), Expect = 8.441e-48
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2
Query: 1010 RMNDQVANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1129
            R   + A YGTFLA S+NLPL SKA  +A  G+T RRLLH
Sbjct:  211 RPIPRSAGYGTFLATSLNLPLQSKALTQAYIGYTGRRLLH 250          

HSP 4 Score: 132.494 bits (332), Expect = 1.298e-29
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKE KPC  WVE+YFKDCLC+LKD+ SF FGL SLVCWGVA+IPQIITNF+TKSSHGVSL FLLTWV G
Sbjct:    2 SLAYCVKEQKPCVRWVEKYFKDCLCSLKDEFSFTFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAG 75          

HSP 5 Score: 60.4622 bits (145), Expect = 1.216e-9
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = -1
Query:  294 IMSSFAL--NVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL  N+ +  SI+ RT+EW++IKPNMPWLLDAA+CVALD  +
Sbjct:  295 LMFVFALVANLTYVLSIVARTTEWDSIKPNMPWLLDAAVCVALDFFI 341          

HSP 6 Score: 31.9574 bits (71), Expect = 1.216e-9
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  136 IILQYMYYSFFRET-VNSDAEDYGDHMDASK 225
            IILQY+YY +F E  V+ +   YGD++DASK
Sbjct:  341 IILQYIYYRYFLEKRVDHEECYYGDYVDASK 371          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2TYS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-46
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  127 LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 162          

HSP 2 Score: 81.2629 bits (199), Expect = 1.388e-46
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = -1
Query: 1200 SARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVS 1376
            SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV+
Sbjct:   38 SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSVA 96          

HSP 3 Score: 73.559 bits (179), Expect = 1.388e-46
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
            VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH
Sbjct:   95 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 129          

HSP 4 Score: 71.633 bits (174), Expect = 1.154e-24
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1
Query:  294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389
            SILVRTSEWENIKPNMPWLLDAAICVALDLV+
Sbjct:  188 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 219          

HSP 5 Score: 71.633 bits (174), Expect = 1.154e-24
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3
Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQYMYYSFFRETVNSDAEDYGDHMDASKRI
Sbjct:  219 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 250          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2PQ84_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.437e-46
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  113 LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 148          

HSP 2 Score: 80.8777 bits (198), Expect = 1.437e-46
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = -1
Query: 1200 SARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVS 1376
            SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV+
Sbjct:   24 SARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSVA 82          

HSP 3 Score: 73.9442 bits (180), Expect = 1.437e-46
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
            VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH
Sbjct:   81 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 115          

HSP 4 Score: 71.633 bits (174), Expect = 1.176e-24
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1
Query:  294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389
            SILVRTSEWENIKPNMPWLLDAAICVALDLV+
Sbjct:  174 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 205          

HSP 5 Score: 71.633 bits (174), Expect = 1.176e-24
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3
Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQYMYYSFFRETVNSDAEDYGDHMDASKRI
Sbjct:  205 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 236          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A059AS69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02478 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.082e-46
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = -1
Query: 1203 LPDFACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLK-AGKPGSGIPIPRASQKP-----NPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSV 1601
            LP    QLYTASTVVLVL+S+YYD++Y  WK R IK  +   +EK+PLK       GI IP A+ K      +PR+E++Y SARSLAGSGTPP RTY+R AKSGPS + LDS SSS+DE+A V S KS ++P+ IPRSV
Sbjct:   17 LPSVLEQLYTASTVVLVLQSLYYDHVYSLWKGRHIKKPDPQAEEKEPLKPKATHQMGIAIPGAAAKATPVKASPRKEFFYTSARSLAGSGTPPFRTYIRVAKSGPSTVHLDSDSSSDDEAARVPSTKSVSKPKQIPRSV 155          

HSP 2 Score: 74.7146 bits (182), Expect = 3.082e-46
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = -1
Query:  816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LLQE  + HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  186 LLQEGGIEHSVFGQWLGWLMAAIYMGGRIPQIWLNI 221          

HSP 3 Score: 36.1946 bits (82), Expect = 3.082e-46
Identity = 16/32 (50.00%), Postives = 24/32 (75.00%), Query Frame = -2
Query: 1010 YGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1105
            YGTFLA+S+ LPL +K++ EA    ++R+LL 
Sbjct:  157 YGTFLASSLTLPLQNKSFTEAHVVLSTRKLLQ 188          

HSP 4 Score: 60.4622 bits (145), Expect = 3.638e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = -1
Query:  294 IMSSFAL--NVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL  NV +  SILVRT EWE+I+ NMPWLLDA +CVALDL +
Sbjct:  232 LMFIFALVANVTYVGSILVRTVEWESIEANMPWLLDAIVCVALDLFI 278          

HSP 5 Score: 36.965 bits (84), Expect = 3.638e-11
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = -3
Query:  136 IILQYMYYSFFRETVNSDAEDYGDHMDASK 225
            IILQY+YY +FR + NSD E  G + +A K
Sbjct:  278 IILQYIYYRYFRRSENSDKEGLGHYEEAGK 307          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: W9RK91_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009167 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.405e-46
Identity = 84/132 (63.64%), Postives = 99/132 (75.00%), Query Frame = -1
Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVE-DEKKPLKAGKPG--SGIPIPRASQKPN---PRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1580
            LYT STVVLVL+SIYYD+IYRW K R+       E D++KPL   KP   SGIPIPR S K +   PRRE+YY SARSLAGSGTPP RTY+RAA+SGPSAM ++S SSS+DE+   + S KS TQPRPIP+S
Sbjct:  118 LYTTSTVVLVLQSIYYDHIYRWCKRRKTTTKQSTEEDQRKPLNNSKPADESGIPIPRPSTKASSGTPRREFYYTSARSLAGSGTPPFRTYLRAARSGPSAMAIESDSSSDDEATVPLRSNKSTTQPRPIPKS 249          

HSP 2 Score: 63.1586 bits (152), Expect = 3.405e-46
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = -1
Query:  819 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN 923
            L Q    +H+ +GQWLGW+MAAIYMGGR+PQIWLN
Sbjct:  284 LQQSGGENHTVYGQWLGWMMAAIYMGGRLPQIWLN 318          

HSP 3 Score: 37.3502 bits (85), Expect = 3.405e-46
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = -2
Query: 1013 YGTFLAASINLPLGSKAWMEARSGFTSRRLL 1105
            YGTFLAAS+NLPL S +  +   G  +R+LL
Sbjct:  253 YGTFLAASVNLPLKSNSLTQVYMGVAARKLL 283          

HSP 4 Score: 130.183 bits (326), Expect = 1.098e-28
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = -2
Query: 2180 AYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2395
            +YCV+ENK C  WVE+YF+DCLCNLKD+ SF FGL SLVCWGVA+IPQIITNF+TKSSHGVSL FLLTWV G
Sbjct:    4 SYCVEENKACVGWVEKYFQDCLCNLKDEFSFAFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAG 75          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U5GAT0_POPTR8.441e-4860.63Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0D2TYS2_GOSRA1.388e-4694.44Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PQ84_GOSRA1.437e-4694.44Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A059AS69_EUCGR3.082e-4657.55Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
W9RK91_9ROSA3.405e-4663.64Uncharacterized protein OS=Morus notabilis GN=L484... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16201FAMILY NOT NAMEDcoord: 97..133
coord: 8..69
NoneNo IPR availablePANTHERPTHR16201:SF43PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEINcoord: 97..133
coord: 8..69
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0093858 ID=g.barbadense_cottongen_reftransV1_0093858; Name=g.barbadense_cottongen_reftransV1_0093858; organism=Gossypium barbadense; type=contig; length=2813bp
ATATTCCTACAGAAAGAGAAGCTTATACTACTACTACTACTACTACTACT
ACTACTACTACTACTACTACCACCACCATACTAGCGAGATACAAACAGCA
ACTTGTCCCCTAAAGATTTCAGTCATTTAGATTCTTTTACTTGCATCCAT
GTGATCTCCATAATCTTCTGCATCACTGTTAACTGTCTCTCTGAAAAAGG
AGTAATACATATACTGTAATATGATCTGTTATAAACAATGTTAAGGTTTA
ATGTTTGTGTAAGCAGAAATTGTTGTAAGAAAATCAACAAGGATACAACT
AAGTCGAGTGCCACGCAAATTGCAGCATCCAGCAGCCATGGCATGTTAGG
CTTAATGTTTTCCCATTCACTGGTTCTCACTAGAATACTGTGAAAAACAT
TCAAGGCAAAGCTTGACATAATCATACAACACGGTACCTAAAATTGTAAA
ATCAATGTCTAAAAAACCGGAATCGATGTCAAAGAACTGTGAGAGCTCCA
GCCACCGGTTCAACAGATCATTTTTTTTTTACAGCGGTGAGTGAAATAAA
TAGAAAAGTCTGAGGCAGAGCTAACCTTGCCACATATGTAGCATTAGCTA
TCAGTGCAAAGATGAACATGAGAGGATTCAAGCCCTATATGATTTCCACT
CATTTAGTCAAATTCAATATATTTATATATAGTTAAGAGTTAATAGTACT
ACCTCAACACTGCCTCTTTTGATCTGGTCAACAAAAGCAAATCATTTGGT
AAGTAACCAAAACGACTATAATGAGAAAAAAAAATGCATGGTTTTTATGA
ATTTAGCTCAATGCTTACATTTAACCATATCTGAGGGATTCGGCCGCCCA
TGTATATGGCGGCCATTAGCCATCCCAGCCACTGCCCAAAGGTGCTGTGG
CTCATACTGTGTTCCTGCAACAGAGACTGATGGTTTTAAGTTATTTGCAG
TTGCATGGGTCGACGTCGATCTTTGTCGAATTCGAGTTAGAATTAACCAG
GAACGGTACATGTAATAGTCTTCGACTGGTAAAGCCAGATCTTGCTTCCA
TCCATGCCTTACTTCCTAAAGGCAAGTTGATTGAGGCAGCTAGAAATGTA
CCATAATTTGCAACCTGATCATTCATACGGAATTTACACTAAAAAAACCG
AACAAAAGTTGGATATTTTAAGTTTTTGAAACATCAAAGCGGGTTCAAGG
CTCACGGATCTTGGGATTGGCCTAGGTTGAGTGGCGGACTTTTTTGATGA
AACATGAGCTGATTCATCTTCTGAGGAGGAACCACTGTCGAGTTCCATAG
CTGAAGGGCCACTTTTAGCTGCTCTCATATATGTTCGGATAGGTGGAGTG
CCACTGCCAGCCAAAGATCTAGCCGACATGTAGTAATACTCCCTGCGAGG
ATTGGGTTTTTGTGAGGCCCTAGGAATGGGAATGCCTGAGCCAGGTTTCC
CAGCCTTCAATGGTTTTTTCTCATCTTCAACCATGTTGTCAGCTTTGATC
CGTCTACATTTCCACCACCTATAGATATAATCATAGTATATACTTTCAAG
TACTAGAACCACAGTACTAGCTGTATAGAGCTGACAAGCAAAATCAGGCA
ATTAGGTTTGGAAGTGCCAATGCAACCCAAAGTATGGGTTATGAACCGAA
TGGGCTCGGTACAACTTTGAACAATAGACCCATGATGTTGACAATGACTT
GGGTTAGATCGTTTTACTTTGACCCAAATGGTTCTTCAAGAATAGTCCTT
AAGTGCAATAATAAATAGAAGAAGGGTTCATTAATGAAATGAAACATGTA
AAACCTAGACTGTCAGTAGCGAACCAGAGCAGTGTAGAACTGAGTTGGCA
ACTGCATCCACAAAATTCAATTAGTCTCGTTAATCTTTTTTTTTTTTTTC
ATATGAAAGATAGCATTTTTGTTGATAAAACAAAGTCATGGTTAAATCCA
ATAAAGCCCGAGGAAAAGAAAAAGAGAGCTCACCGTTGCAGGTTCCAGAA
GGCATCCAACAAGGTTGAACACATCACTGCAACACCAAACAAAGATGAAC
GATAGTCATGATAAAGCATAAACAAGACAGGAATTTATATATGATGACGA
ACATTCTATGTATCATTAAAGAAAAGAAAACGAGAGTGATAATATGGTTT
TTCTTTTTGGAGGAGAAGAAGGAATCAAACCCAACAACCCAAGTGAGGAG
AAAAAGAAGGGAAACTCCATGGCTGGACTTGGTTTTGAAGTTGGTGATGA
TTTGAGGGATATCTGCAACTCCCCAGCAGACAAGACTAGTTAACCCAAAA
CCAAAAGACAAATCATCCTTTAGATTGCAAAGACAGTCTTTGAAATATCT
CTCAACCCACACATTGCAGGGCTTGTTTTCCTTAACACAGTAAGCTTGAG
ACTGAGACATACCAAAACAAAACAAAAAAAGAAAATACTGCAAAAAAAAC
TAGGTAAGTTGATGAGTTTTGTGGAAAGAAGAGCCTATATATATCCAAAA
GTTGGTTCAATTAGTATTAGTAAATAGAAAGACCAGAAATCACTTAAAAT
TATTTATGTCCTTTTAAGAGTGAAGCGAAAGGACTTCAACGCTCTCTCTC
TTCTCTTCCTCTTTCTCGTATGCATATTCTTATCCTGGATGCTTTTACAT
TCAATCTTCAACTTTTTCACACAGAAAAACCACTTTTGATTTCTTGTATG
AATCTTATGAAAGCATATTCCTGTCATTCATCGATGCATGATTGCATGTA
AAAACTTCATGGACGGTTCAAATTCATCAGTGCTGCAACAAAGGAAAATG
AGACAATATTGAA
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