g.barbadense_cottongen_reftransV1_0093858, g.barbadense_cottongen_reftransV1_0093858 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0093858
Unique Name	g.barbadense_cottongen_reftransV1_0093858
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2813

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt12	chromosome	g.barbadense_cottongen_reftransV1_0093858:1..2813 . Dt12:13272354..13276650 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DFX5_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 1 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.696e-60
Identity = 137/259 (52.90%), Postives = 153/259 (59.07%), Query Frame = -1

Query:  816 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1592
            +   LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   95 YTALLYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291

HSP 2 Score: 143.28 bits (360), Expect = 3.457e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75

HSP 3 Score: 62.3882 bits (150), Expect = 3.257e-16
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -1

Query:  294 IMSSFAL----NVFHSILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL        SILVRT+EWE+IK NMPWLLDAA+CVALDL +
Sbjct:  302 LMFIFALIANATYVASILVRTTEWESIKANMPWLLDAAVCVALDLFI 348

HSP 4 Score: 52.373 bits (124), Expect = 3.257e-16
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = -3

Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQY+YY +FR+T NSD EDYGD+M+ASK +
Sbjct:  348 IILQYVYYKYFRKTDNSDGEDYGDYMEASKEV 379

HSP 5 Score: 68.1662 bits (165), Expect = 1.095e-8
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2

Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A067KHT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12276 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.987e-58
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = -1

Query: 1203 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPG-SGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSV 1580
            LYT ST+VLVL+ +YYD+IYRWWKC++I  +  VED+KKPLK  K G SGIPIP AS+   PRREYYY SARS+AGSGTPP R Y+RAA+SGPSAM LD+ SSS+DE++ VS  KS +QPRPIPRSV
Sbjct:   99 LYTTSTIVLVLQGLYYDHIYRWWKCQKIDDNQQVEDDKKPLKQNKSGDSGIPIPNASRTATPRREYYYTSARSMAGSGTPPFRGYLRAARSGPSAMGLDNESSSDDEASTVSV-KSVSQPRPIPRSV 224

HSP 2 Score: 70.8626 bits (172), Expect = 6.987e-58
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = -1

Query:  816 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL E S M HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  255 LLHEGSGMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291

HSP 3 Score: 45.8246 bits (107), Expect = 6.987e-58
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = -2

Query: 1010 RMNDQVANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1129
            R   +   YGTFLA S+NLP  SKA   A +G TSRRLLH
Sbjct:  218 RPIPRSVGYGTFLATSVNLPRQSKALTYAYTGITSRRLLH 257

HSP 4 Score: 136.346 bits (342), Expect = 6.843e-31
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKE KPC  WVE+YFKDCLCNLKD+ SFGFG  SL+CWGVA+IPQIITNF+TKSSHGVSL+FLLTWV G
Sbjct:    2 SLAYCVKEQKPCVRWVEKYFKDCLCNLKDEFSFGFGFISLICWGVAEIPQIITNFRTKSSHGVSLIFLLTWVAG 75

HSP 5 Score: 61.6178 bits (148), Expect = 4.997e-12
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = -1

Query:  294 MIMSSFALNVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 425
            M + + A N+ +  SI+VRT+EW++IK NMPWLLDAA+CVALDL +
Sbjct:  303 MFVFALAANLTYVLSIVVRTTEWDSIKANMPWLLDAAVCVALDLFI 348

HSP 6 Score: 38.891 bits (89), Expect = 4.997e-12
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = -3

Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQY+YY +  +   S  EDYGD+M+ASK +
Sbjct:  348 IILQYIYYRYMHQKRISHGEDYGDYMEASKAV 379

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: B9T4V4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0411610 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 8.176e-56
Identity = 80/129 (62.02%), Postives = 93/129 (72.09%), Query Frame = -1

Query: 1206 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRS 1592
            +   LYT ST+VLVL+ +YYDYIYRWWK ++ + +  VEDEKKPLK     SGIPIP AS +  PRREYYY SARS+A SGTPP R Y+R AKSGPSAM  D  SSS D+ A   S  S +QPRPIPRS
Sbjct:   95 YTALLYTTSTIVLVLQGLYYDYIYRWWKGQKNEVNQQVEDEKKPLKPKLGDSGIPIPNASTRSTPRREYYYTSARSMASSGTPPFRGYLRTAKSGPSAMGFDHESSSSDDEAAPVSAASVSQPRPIPRS 223

HSP 2 Score: 70.8626 bits (172), Expect = 8.176e-56
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = -1

Query:  816 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL E S M HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  255 LLHEGSGMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291

HSP 3 Score: 49.2914 bits (116), Expect = 8.176e-56
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query: 1010 RMNDQVANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1129
            R   + A YGTFLA S+NLPL SKA  +A  G TSRRLLH
Sbjct:  218 RPIPRSAGYGTFLATSLNLPLQSKALTDAYIGVTSRRLLH 257

HSP 4 Score: 136.346 bits (342), Expect = 7.640e-31
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKE KPC  WVERYFKDCLC+LKD+LSFGFG  SLV WGVA++PQIITNF+TKSSHGVSLLFLLTWV G
Sbjct:    2 SLAYCVKEQKPCVRWVERYFKDCLCSLKDELSFGFGFVSLVSWGVAEVPQIITNFRTKSSHGVSLLFLLTWVAG 75

HSP 5 Score: 60.4622 bits (145), Expect = 9.505e-13
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  294 PCCMIMSSFA-LNVFHSILVRTSEWENIKPNMPWLLDAAICVALDLVV 434
            P   I +  A L    SI+VRT+EWE+IK NMPWLLDAA+CVALD  +
Sbjct:  301 PLMFIFALVANLTYVLSIVVRTTEWESIKANMPWLLDAAVCVALDFFI 348

HSP 6 Score: 42.3578 bits (98), Expect = 9.505e-13
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = -3

Query:  136 IILQYMYYSFFRETVNSDAEDYGDHMDASK 225
            IILQY+YY +FRE      EDYGD+MDA K
Sbjct:  348 IILQYVYYRYFREKKMRHGEDYGDYMDAVK 377

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DGJ2_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 4 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.611e-55
Identity = 133/256 (51.95%), Postives = 145/256 (56.64%), Query Frame = -1

Query:  816 QLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1583
            Q YTA T       IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   93 QFYTALT-------IYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 279

HSP 2 Score: 142.895 bits (359), Expect = 3.497e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75

HSP 3 Score: 62.7734 bits (151), Expect = 2.591e-16
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -1

Query:  294 IMSSFAL----NVFHSILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL        SILVRT+EWE+IK NMPWLLDAA+CVALDL +
Sbjct:  290 LMFIFALIANATYVASILVRTTEWESIKANMPWLLDAAVCVALDLFI 336

HSP 4 Score: 52.373 bits (124), Expect = 2.591e-16
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = -3

Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQY+YY +FR+T NSD EDYGD+M+ASK +
Sbjct:  336 IILQYVYYKYFRKTDNSDGEDYGDYMEASKEV 367

HSP 5 Score: 68.1662 bits (165), Expect = 1.148e-8
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2

Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  212 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 246

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2QLY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G018000 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.599e-50
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -1

Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRS 1580
            LYT STVVLVL+S+YYDYI RWWKCRRIK +++VEDEK+PLK GK   GIPIP++S KP+PRRE+YY SARSLAGSGTPP RTY+R AKSGPSA+ LD  SSS+DE+  V SKKS TQPRPIPR+
Sbjct:   99 LYTISTVVLVLQSVYYDYINRWWKCRRIKTNDVVEDEKEPLKPGKHEPGIPIPKSSSKPHPRREFYYTSARSLAGSGTPPFRTYLRVAKSGPSALGLDGDSSSDDETVSVLSKKSGTQPRPIPRA 223

HSP 2 Score: 54.299 bits (129), Expect = 1.599e-50
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = -2

Query: 1010 NYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1108
            +YGTFLAAS+NLP GSKA ME ++GFT+RRLL 
Sbjct:  226 SYGTFLAASLNLPFGSKALMEVKTGFTNRRLLQ 258

HSP 3 Score: 142.51 bits (358), Expect = 2.046e-33
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            SQ YCV+ENKPC  WV+RYFKDCLCNLKD+ SFGFG+ SLVCWGVA+IPQIITNFKTKS+HGVSLLFLLTWV G
Sbjct:    2 SQPYCVRENKPCTGWVQRYFKDCLCNLKDEFSFGFGIISLVCWGVAEIPQIITNFKTKSAHGVSLLFLLTWVAG 75

HSP 4 Score: 82.4185 bits (202), Expect = 1.379e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -1

Query:  816 MQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 956
            M+++    ++ LLQEHSM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  245 MEVKTGFTNRRLLQEHSMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2MI32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G018000 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.720e-50
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -1

Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRS 1580
            LYT STVVLVL+S+YYDYI RWWKCRRIK +++VEDEK+PLK GK   GIPIP++S KP+PRRE+YY SARSLAGSGTPP RTY+R AKSGPSA+ LD  SSS+DE+  V SKKS TQPRPIPR+
Sbjct:   99 LYTISTVVLVLQSVYYDYINRWWKCRRIKTNDVVEDEKEPLKPGKHEPGIPIPKSSSKPHPRREFYYTSARSLAGSGTPPFRTYLRVAKSGPSALGLDGDSSSDDETVSVLSKKSGTQPRPIPRA 223

HSP 2 Score: 54.299 bits (129), Expect = 1.720e-50
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = -2

Query: 1010 NYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1108
            +YGTFLAAS+NLP GSKA ME ++GFT+RRLL 
Sbjct:  226 SYGTFLAASLNLPFGSKALMEVKTGFTNRRLLQ 258

HSP 3 Score: 142.51 bits (358), Expect = 3.950e-33
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            SQ YCV+ENKPC  WV+RYFKDCLCNLKD+ SFGFG+ SLVCWGVA+IPQIITNFKTKS+HGVSLLFLLTWV G
Sbjct:    2 SQPYCVRENKPCTGWVQRYFKDCLCNLKDEFSFGFGIISLVCWGVAEIPQIITNFKTKSAHGVSLLFLLTWVAG 75

HSP 4 Score: 82.0333 bits (201), Expect = 2.252e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -1

Query:  816 MQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 956
            M+++    ++ LLQEHSM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  245 MEVKTGFTNRRLLQEHSMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2RF80_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G018000 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.201e-50
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = -1

Query: 1206 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRS 1592
            +   LYT STVVLVL+S+YYDYI RWWKCRRIK +++VEDEK+PLK GK   GIPIP++S KP+PRRE+YY SARSLAGSGTPP RTY+R AKSGPSA+ LD  SSS+DE+  V SKKS TQPRPIPR+
Sbjct:  132 YTALLYTISTVVLVLQSVYYDYINRWWKCRRIKTNDVVEDEKEPLKPGKHEPGIPIPKSSSKPHPRREFYYTSARSLAGSGTPPFRTYLRVAKSGPSALGLDGDSSSDDETVSVLSKKSGTQPRPIPRA 260

HSP 2 Score: 53.5286 bits (127), Expect = 2.201e-50
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = -2

Query: 1010 NYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1108
            +YGTFLAAS+NLP GSKA ME ++GFT+RRLL 
Sbjct:  263 SYGTFLAASLNLPFGSKALMEVKTGFTNRRLLQ 295

HSP 3 Score: 144.821 bits (364), Expect = 1.679e-33
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = -2

Query: 2180 GMSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2413
             +S SQ YCV+ENKPC  WV+RYFKDCLCNLKD+ SFGFG+ SLVCWGVA+IPQIITNFKTKS+HGVSLLFLLTWV G
Sbjct:   35 ALSMSQPYCVRENKPCTGWVQRYFKDCLCNLKDEFSFGFGIISLVCWGVAEIPQIITNFKTKSAHGVSLLFLLTWVAG 112

HSP 4 Score: 56.6102 bits (135), Expect = 2.068e-13
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = -1

Query:  294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389
            SILVRT+EW  IK NMPWLLDA +CVALDL +
Sbjct:  354 SILVRTTEWGPIKANMPWLLDAVVCVALDLFI 385

HSP 5 Score: 48.521 bits (114), Expect = 2.068e-13
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = -3

Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQY+YY +FR+T NSD EDYGD+ +A+K +
Sbjct:  385 IILQYIYYKYFRQTDNSDGEDYGDYKEANKEV 416

HSP 6 Score: 82.4185 bits (202), Expect = 3.393e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -1

Query:  816 MQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 956
            M+++    ++ LLQEHSM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  282 MEVKTGFTNRRLLQEHSMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: U5G4W1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12260g PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 9.928e-49
Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = -1

Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPG-SGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1580
            LYT STVVLVL+ +YYD++YRW +CR+ K +  V+D++ PLK      SGI IP+AS +  PRR++YYMSARSLAGS TPP R+Y+RAAKSGPSA+ LD+ SSS+DE+A  VS   + +QPRPIPRS
Sbjct:   99 LYTTSTVVLVLQGLYYDHVYRWCRCRKTKDNQQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKSGPSAVGLDNESSSDDEAAAPVSVSNTVSQPRPIPRS 225

HSP 2 Score: 70.4774 bits (171), Expect = 9.928e-49
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = -1

Query:  810 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNVSI 923
            LL E     HS FGQWLGWLMAAIYMGGRIPQIWLNVS+
Sbjct:  257 LLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNVSV 295

HSP 3 Score: 49.2914 bits (116), Expect = 9.928e-49
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query: 1010 RMNDQVANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1129
            R   + A YGTFLA S+NLPL SKA  +A  G+T RRLLH
Sbjct:  220 RPIPRSAGYGTFLATSLNLPLQSKALTQAYIGYTGRRLLH 259

HSP 4 Score: 132.494 bits (332), Expect = 3.229e-30
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKE KPC  WVE+YFKDCLC+LKD+ SF FGL SLVCWGVA+IPQIITNF+TKSSHGVSL FLLTWV G
Sbjct:    2 SLAYCVKEQKPCVRWVEKYFKDCLCSLKDEFSFTFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAG 75

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: U5G581_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12260g PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.723e-48
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = -1

Query: 1206 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPG-SGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1592
            F  QLYT STVVLVL+ +YYD++YRW +CR+ K +  V+D++ PLK      SGI IP+AS +  PRR++YYMSARSLAGS TPP R+Y+RAAKSGPSA+ LD+ SSS+DE+A  VS   + +QPRPIPRS
Sbjct:    8 FNLQLYTTSTVVLVLQGLYYDHVYRWCRCRKTKDNQQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKSGPSAVGLDNESSSDDEAAAPVSVSNTVSQPRPIPRS 138

HSP 2 Score: 67.3958 bits (163), Expect = 1.723e-48
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = -1

Query:  816 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL E     HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  170 LLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNI 206

HSP 3 Score: 47.7506 bits (112), Expect = 1.723e-48
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = -2

Query: 1010 ANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1111
            A YGTFLA S+NLPL SKA  +A  G+T RRLLH
Sbjct:  139 AGYGTFLATSLNLPLQSKALTQAYIGYTGRRLLH 172

HSP 4 Score: 60.4622 bits (145), Expect = 1.290e-9
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = -1

Query:  294 IMSSFAL--NVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL  N+ +  SI+ RT+EW++IKPNMPWLLDAA+CVALD  +
Sbjct:  217 LMFVFALVANLTYVLSIVARTTEWDSIKPNMPWLLDAAVCVALDFFI 263

HSP 5 Score: 31.9574 bits (71), Expect = 1.290e-9
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = -3

Query:  136 IILQYMYYSFFRET-VNSDAEDYGDHMDASK 225
            IILQY+YY +F E  V+ +   YGD++DASK
Sbjct:  263 IILQYIYYRYFLEKRVDHEECYYGDYVDASK 293

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: U5G8H3_POPTR (PQ-loop repeat family protein OS=Populus trichocarpa GN=POPTR_0007s12260g PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.230e-48
Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = -1

Query: 1206 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPG-SGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXX-XXSKKSATQPRPIPRS 1580
            LYT STVVLVL+ +YYD++YRW +CR+ K +  V+D++ PLK      SGI IP+AS +  PRR++YYMSARSLAGS TPP R+Y+RAAKSGPSA+ LD+ SSS+DE+A  VS   + +QPRPIPRS
Sbjct:   99 LYTTSTVVLVLQGLYYDHVYRWCRCRKTKDNQQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKSGPSAVGLDNESSSDDEAAAPVSVSNTVSQPRPIPRS 225

HSP 2 Score: 67.3958 bits (163), Expect = 8.230e-48
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = -1

Query:  816 LLQEHS-MSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL E     HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  257 LLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNI 293

HSP 3 Score: 49.2914 bits (116), Expect = 8.230e-48
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query: 1010 RMNDQVANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1129
            R   + A YGTFLA S+NLPL SKA  +A  G+T RRLLH
Sbjct:  220 RPIPRSAGYGTFLATSLNLPLQSKALTQAYIGYTGRRLLH 259

HSP 4 Score: 132.494 bits (332), Expect = 1.248e-29
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = -2

Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKE KPC  WVE+YFKDCLC+LKD+ SF FGL SLVCWGVA+IPQIITNF+TKSSHGVSL FLLTWV G
Sbjct:    2 SLAYCVKEQKPCVRWVEKYFKDCLCSLKDEFSFTFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAG 75

HSP 5 Score: 60.077 bits (144), Expect = 1.340e-9
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = -1

Query:  294 IMSSFAL--NVFH--SILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL  N+ +  SI+ RT+EW++IKPNMPWLLDAA+CVALD  +
Sbjct:  304 LMFVFALVANLTYVLSIVARTTEWDSIKPNMPWLLDAAVCVALDFFI 350

HSP 6 Score: 31.9574 bits (71), Expect = 1.340e-9
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = -3

Query:  136 IILQYMYYSFFRET-VNSDAEDYGDHMDASK 225
            IILQY+YY +F E  V+ +   YGD++DASK
Sbjct:  350 IILQYIYYRYFLEKRVDHEECYYGDYVDASK 380

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A061DFX5_THECC	1.696e-60	52.90	PQ-loop repeat family protein / transmembrane fami...	[more]
A0A067KHT5_JATCU	6.987e-58	68.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9T4V4_RICCO	8.176e-56	62.02	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0A061DGJ2_THECC	2.611e-55	51.95	PQ-loop repeat family protein / transmembrane fami...	[more]
A0A0D2QLY9_GOSRA	1.599e-50	73.60	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MI32_GOSRA	1.720e-50	73.60	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RF80_GOSRA	2.201e-50	71.32	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
U5G4W1_POPTR	9.928e-49	60.63	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
U5G581_POPTR	1.723e-48	60.31	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
U5G8H3_POPTR	8.230e-48	60.63	PQ-loop repeat family protein OS=Populus trichocar...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16201	FAMILY NOT NAMED	coord: 97..133 coord: 8..69
None	No IPR available	PANTHER	PTHR16201:SF43	PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN	coord: 97..133 coord: 8..69
None	No IPR available	TMHMM	TMhelix		coord: 4..26

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0093858 ID=g.barbadense_cottongen_reftransV1_0093858; Name=g.barbadense_cottongen_reftransV1_0093858; organism=Gossypium barbadense; type=contig; length=2813bp
ATATTCCTACAGAAAGAGAAGCTTATACTACTACTACTACTACTACTACT
ACTACTACTACTACTACTACCACCACCATACTAGCGAGATACAAACAGCA
ACTTGTCCCCTAAAGATTTCAGTCATTTAGATTCTTTTACTTGCATCCAT
GTGATCTCCATAATCTTCTGCATCACTGTTAACTGTCTCTCTGAAAAAGG
AGTAATACATATACTGTAATATGATCTGTTATAAACAATGTTAAGGTTTA
ATGTTTGTGTAAGCAGAAATTGTTGTAAGAAAATCAACAAGGATACAACT
AAGTCGAGTGCCACGCAAATTGCAGCATCCAGCAGCCATGGCATGTTAGG
CTTAATGTTTTCCCATTCACTGGTTCTCACTAGAATACTGTGAAAAACAT
TCAAGGCAAAGCTTGACATAATCATACAACACGGTACCTAAAATTGTAAA
ATCAATGTCTAAAAAACCGGAATCGATGTCAAAGAACTGTGAGAGCTCCA
GCCACCGGTTCAACAGATCATTTTTTTTTTACAGCGGTGAGTGAAATAAA
TAGAAAAGTCTGAGGCAGAGCTAACCTTGCCACATATGTAGCATTAGCTA
TCAGTGCAAAGATGAACATGAGAGGATTCAAGCCCTATATGATTTCCACT
CATTTAGTCAAATTCAATATATTTATATATAGTTAAGAGTTAATAGTACT
ACCTCAACACTGCCTCTTTTGATCTGGTCAACAAAAGCAAATCATTTGGT
AAGTAACCAAAACGACTATAATGAGAAAAAAAAATGCATGGTTTTTATGA
ATTTAGCTCAATGCTTACATTTAACCATATCTGAGGGATTCGGCCGCCCA
TGTATATGGCGGCCATTAGCCATCCCAGCCACTGCCCAAAGGTGCTGTGG
CTCATACTGTGTTCCTGCAACAGAGACTGATGGTTTTAAGTTATTTGCAG
TTGCATGGGTCGACGTCGATCTTTGTCGAATTCGAGTTAGAATTAACCAG
GAACGGTACATGTAATAGTCTTCGACTGGTAAAGCCAGATCTTGCTTCCA
TCCATGCCTTACTTCCTAAAGGCAAGTTGATTGAGGCAGCTAGAAATGTA
CCATAATTTGCAACCTGATCATTCATACGGAATTTACACTAAAAAAACCG
AACAAAAGTTGGATATTTTAAGTTTTTGAAACATCAAAGCGGGTTCAAGG
CTCACGGATCTTGGGATTGGCCTAGGTTGAGTGGCGGACTTTTTTGATGA
AACATGAGCTGATTCATCTTCTGAGGAGGAACCACTGTCGAGTTCCATAG
CTGAAGGGCCACTTTTAGCTGCTCTCATATATGTTCGGATAGGTGGAGTG
CCACTGCCAGCCAAAGATCTAGCCGACATGTAGTAATACTCCCTGCGAGG
ATTGGGTTTTTGTGAGGCCCTAGGAATGGGAATGCCTGAGCCAGGTTTCC
CAGCCTTCAATGGTTTTTTCTCATCTTCAACCATGTTGTCAGCTTTGATC
CGTCTACATTTCCACCACCTATAGATATAATCATAGTATATACTTTCAAG
TACTAGAACCACAGTACTAGCTGTATAGAGCTGACAAGCAAAATCAGGCA
ATTAGGTTTGGAAGTGCCAATGCAACCCAAAGTATGGGTTATGAACCGAA
TGGGCTCGGTACAACTTTGAACAATAGACCCATGATGTTGACAATGACTT
GGGTTAGATCGTTTTACTTTGACCCAAATGGTTCTTCAAGAATAGTCCTT
AAGTGCAATAATAAATAGAAGAAGGGTTCATTAATGAAATGAAACATGTA
AAACCTAGACTGTCAGTAGCGAACCAGAGCAGTGTAGAACTGAGTTGGCA
ACTGCATCCACAAAATTCAATTAGTCTCGTTAATCTTTTTTTTTTTTTTC
ATATGAAAGATAGCATTTTTGTTGATAAAACAAAGTCATGGTTAAATCCA
ATAAAGCCCGAGGAAAAGAAAAAGAGAGCTCACCGTTGCAGGTTCCAGAA
GGCATCCAACAAGGTTGAACACATCACTGCAACACCAAACAAAGATGAAC
GATAGTCATGATAAAGCATAAACAAGACAGGAATTTATATATGATGACGA
ACATTCTATGTATCATTAAAGAAAAGAAAACGAGAGTGATAATATGGTTT
TTCTTTTTGGAGGAGAAGAAGGAATCAAACCCAACAACCCAAGTGAGGAG
AAAAAGAAGGGAAACTCCATGGCTGGACTTGGTTTTGAAGTTGGTGATGA
TTTGAGGGATATCTGCAACTCCCCAGCAGACAAGACTAGTTAACCCAAAA
CCAAAAGACAAATCATCCTTTAGATTGCAAAGACAGTCTTTGAAATATCT
CTCAACCCACACATTGCAGGGCTTGTTTTCCTTAACACAGTAAGCTTGAG
ACTGAGACATACCAAAACAAAACAAAAAAAGAAAATACTGCAAAAAAAAC
TAGGTAAGTTGATGAGTTTTGTGGAAAGAAGAGCCTATATATATCCAAAA
GTTGGTTCAATTAGTATTAGTAAATAGAAAGACCAGAAATCACTTAAAAT
TATTTATGTCCTTTTAAGAGTGAAGCGAAAGGACTTCAACGCTCTCTCTC
TTCTCTTCCTCTTTCTCGTATGCATATTCTTATCCTGGATGCTTTTACAT
TCAATCTTCAACTTTTTCACACAGAAAAACCACTTTTGATTTCTTGTATG
AATCTTATGAAAGCATATTCCTGTCATTCATCGATGCATGATTGCATGTA
AAAACTTCATGGACGGTTCAAATTCATCAGTGCTGCAACAAAGGAAAATG
AGACAATATTGAA

Search form

g.barbadense_cottongen_reftransV1_0093858, g.barbadense_cottongen_reftransV1_0093858 (contig) Gossypium barbadense

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