g.barbadense_cottongen_reftransV1_0093636, g.barbadense_cottongen_reftransV1_0093636 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 1.716e-9 Identity = 82/344 (23.84%), Postives = 160/344 (46.51%), Query Frame = 2 Query: 788 TVFNAINVMVGVGLLSTPHTIAQGGWA-SFLVLIFFAVVCCYT---AILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELY---SYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATL----VIVLCLLYLGAAGGVGFHHTGKAVNWSGIPV----VIGVYGFCHSGHSV-------FPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQI--TLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPD--HVVDSLWCFFLLRALLVFSTVGVAFVMPFF 1741 + F+ + +VG G+L P+ +++ GW +VLI V+ YT I M FE + Y ++G+AAFG+ +L + IV+ +L S C+ +++ G++L ++ D+ L H I + + ++ LK+ IS +S V ++ + + L G A V + + K N + +P+ +G F ++GH+V P+ ++ + + +K A+ + + + Y VA +G+ FG + I TL P ++ +A +I+ + Y + +P+ IE ++ H + F +R V +T+G+A +P F Sbjct: 41 SAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFEGKR-FDRYHELGQAAFGK--KLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKVRHFILIFASSQFVLSL-LKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGY--KRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAI-VAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGPKGLII--VANIFVIIHLMGSYQVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHF 375
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: ANT1_ARATH (Amino acid transporter ANT1 OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 5.014e-9 Identity = 88/369 (23.85%), Postives = 144/369 (39.02%), Query Frame = 2 Query: 776 SVTQTVFNAINVMVGVGLLSTPHTIAQGGW-ASFLVLIFFAVVCCYTAILMKYCFESREGII------SYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLY-----LGAAGGVGF-HHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLT-KYALLLIPLARSIEELLPDHVVD----------------SLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLLSLNTLDLVKF 1792 S QT+ N I +VG G+L P+ GW A L +I Y +L+ C + E +Y D+G G GR +++T V +++ G NL+ +F L SM F ++ + + W+ + +S S + +I +C + + G F T + G+P GV FC G ++ + SM ++ F K + +Y GY+ +G T ITLN+P S IA+ + LT + +++ PL IE+ L +D S + F R LLV +A ++P FG L+ L+ F Sbjct: 32 SALQTLGNIIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFATYYCMLLLIQCRDKLESEEGEEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLVFIGRNLSSIFSSYGL--------SMVSFILILVPIEVGLSWITSLSALSPFSIFADICN-IIAMCFVVKENVEMVIEGDFSFSDRTAISSTIGGLPFAGGVAVFCFEGFAMTLALESSMREREAFPKLLAKVLAGITFVYVLFGFCGYMAYGDQTKDIITLNLPNNW--SAIAVQIGLCVGLTFTFPIMVHPLNEIIEQKLKR--IDWLQKHHNGYSNETGSVSKFAIFTTRTLLVVGLAAIASLVPGFGTFASLVGSTLCALISF 387
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 9.942e-8 Identity = 85/347 (24.50%), Postives = 154/347 (44.38%), Query Frame = 2 Query: 788 TVFNAINVMVGVGLLSTPHTIAQGGWA-SFLVLIFFAVVCCYTAILMKYCFESREG--IISYPDMGEAAFGRFGRLF--VSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVV-----ATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPV----VIGVYGFCHSGHSV-------FPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNM-PPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCF-------FLLRALLVFSTVGVAFVMPFF 1741 + F+ + +VG G+L P+ +++ GW +VLI V+ YT M E EG Y ++G+AAFG+ L+ V + L E+ S C+ +++ G +L + D + F ++ A LK+ IS +S V +T+ V L G V + + + + +P+ +G F ++GH+V P+ ++ + + +K A+ + + + Y VA +G+ FG S I ++ P ALV +A VI+ L Y + +P+ IE V+ +W F F +R V +T+G+A +P++ Sbjct: 39 SAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEI-SVCIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGATTGSVEYGYRKRT---TSVPLAFLSALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAV-VAYIIVAFCYFPVALVGFKTFGNSVEESILESLTKPTALVI-VANMFVVIHLLGSYQVYAMPVFDMIES-----VMIRIWHFSPTRVLRFTIRWTFVAATMGIAVGLPYY 374
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: S36A4_MOUSE (Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.984e-7 Identity = 78/340 (22.94%), Postives = 128/340 (37.65%), Query Frame = 2 Query: 614 SNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWA----SFLVLIFFAVVCCYTAILMKY--CFESREGIISYPDMGEAAF-----------GRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAI--------VTALVVLPTVWL-------KDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMP 1537 LD+D PL+ E S D QKH QL G+ +G S QT+ + + +G GLL P I G S + + +V C + + + C ++ + Y D A +GR V L +C +I+ +N+ ++ G P ++ S A V L LP + L K++ ++S+L+ + A+LVI+ + H+ W P+ G F G V + M + +F +A+ I + VLY +A +GY+ F ITLN+P Sbjct: 13 EELDMDVMRPLINEQNFDGSS---DEEQEQTLVPIQKH---YQLDGQ----HGISFLQTLVHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFKKSTLGYSDTVSFAMEASPWSCLQRQAAWGRQVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSVDLRVYMLCFLPLIILLVFIRELKNLFVLSFLANISMAASLVIIYQYVVRNMPDP---HNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLP 339
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: S36A2_RAT (Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 6.973e-7 Identity = 81/363 (22.31%), Postives = 144/363 (39.67%), Query Frame = 2 Query: 650 PENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWA----SFLVLIFFAVVCCYTAI-------------LMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVS------------LDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYAL-------LLIPLARS 1630 PE+ K + + ++G+ S S+K K +TG QT+ + + +G G+L P + G S LV+ A C + + M Y G+ S P+ + +GR VS L +C +I+ DNL ++ V+ + P ++ +++ A + L +L V+++++R+++ S V+ LV ++ + G +W P+ G F V + M D +F + + + LY + A+GYL FG + ITLN+P L + L V+ L +AL ++IPLA S Sbjct: 24 PESAKKVQSQDPNPVNGSSSESSEK---TKGITG----------FQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNKPFMDYGDTVMHGLASSPNTWLQSHAHWGRHAVSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVVLTPTID-SRLYMLAFLPVLGLL--VFIRNLRVLTIFSLLANVSMLVSLVIIGQYIIQGIPDPSQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKDARRFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLL-YVVGILCTHALQFYVPAEIIIPLAVS 369
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: AVT4_YEAST (Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT4 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 9.059e-7 Identity = 88/375 (23.47%), Postives = 156/375 (41.60%), Query Frame = 2 Query: 602 SSQKSNLDLDGKLPLLPEN------------RKSYSKEFLDSISGAQSTWSQKHSFAKQLTGE---FPIAYGCSVTQTVF-NAINVMVGVGLLSTPHTIAQGG-WASFLVLIFFAVVC--CYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIR---LISYLSAGGVVATLVIVLCL----LYLGAAG--GVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQAL-VSKIALWTTVINPLTKYALLLIPLARSIEE 1639 SS SN D+D K+P L N +S+ +F+ S + S P A G + T+ VF + +G G+L P+ GG + S +L FF + CY ++ +S G+ S+ D+G +G + R+ + L + ++I NL V L L + +F + + +P ++++I L S L+ ++A LVIV+ L+ G +G + A W+ + IG F G + + SM + +F + + +L+ +A +GYL +G + + I LN+P + V+ I L+ ++ L+ L L P + IE Sbjct: 225 SSPSSNQDID-KVPFLTRNFLEFLYVFGHFAGESFEDDFIPDSSNMMIRGEDERSALLSRPDHMKVLPSAKGTTSTKKVFLILLKSFIGTGVLFLPNAFHNGGLFFSVSMLAFFGIYSYWCYYILVQA---KSSCGVSSFGDIGLKLYGPWMRIIILFSLVITQVGFSGAYMIFTAKNLQAFLDNV-FHVGVLPLSYLMVFQTI---IFIPLSFIRNISKLSLPSLLANFFIMAGLVIVIIFTAKRLFFDLMGTPAMGVVYGLNADRWT---LFIGTAIFAFEGIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSNVQTVILLNLPQSNIFVNLIQLFYSIAIMLST-PLQLFPAIKIIEN 587
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: A0A078JQ97_BRANA (BnaCnng56610D protein OS=Brassica napus GN=BnaCnng56610D PE=4 SV=1) HSP 1 Score: 555.829 bits (1431), Expect = 2.600e-178 Identity = 281/480 (58.54%), Postives = 349/480 (72.71%), Query Frame = 2 Query: 332 ERHNEEFVLESDVDDNEDDLEESKAXXXXXXXXXXXXXXXXXXXRGGPSTTFTSQ-QWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIA-YGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762 ++E +E +D+ED + SK + S ++ + D TF SQ QWPQSF+ET D YTI ASP FG + +F SF Q KSNLD++ K PLLPE E D S QS WS K SFA++L PI YGCS TQT+FNAINVM GVGLLSTP T+ + GWAS ++L+ FAV+CCYTA LMK CFE++ GII+YPD+GEAAFG++GR+ + ++LYTELYSYCVEFII+EGDNLT LFPG S+DW + +DS HLF I TALVVLPTVWLKD+R+ISYLSAGGV+AT++I + +LG GG+GFHHTG AV W+GIP IG+YGFC+SGHSV PNIYQSMADK++F KA+ F LC+ LYGGVA MGY FG++TLSQITLNMP SK+A WTTV++P TKYALL+ PLARSIEELLP+ + +++WCF LLR LV S+V AF++PFFG V L+ Sbjct: 4 NNKDKEKKIEFTFEDDEDLEDTSKYENDSDNTDQSDLGDLPGDDDNNNDDTFISQVQWPQSFRETTDSYTIAASPIFGSLLSNPSFYTPSFYRQSKSNLDVESKAPLLPERN-----EESDKASVTQSVWSHKGSFAEEL----PIGGYGCSFTQTIFNAINVMAGVGLLSTPFTVKEAGWASMVILLLFAVICCYTASLMKDCFEAKTGIITYPDIGEAAFGKYGRILICVILYTELYSYCVEFIILEGDNLTGLFPGTSIDWLGIRIDSKHLFGIFTALVVLPTVWLKDLRIISYLSAGGVIATVLIAVSTFFLGTTGGIGFHHTGPAVKWNGIPFAIGIYGFCYSGHSVIPNIYQSMADKTKFNKAVITTFILCVFLYGGVAIMGYCMFGEATLSQITLNMPKGLFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERISENIWCFLLLRTALVASSVCSAFLIPFFGLVMALI 474
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: K7LIA9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 555.444 bits (1430), Expect = 3.200e-178 Identity = 277/466 (59.44%), Postives = 334/466 (71.67%), Query Frame = 2 Query: 464 RGGPSTTFTSQQWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLL--PENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLT-----------------------------------KYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGK 1747 R P + F+SQQWPQS+KET D YTI A+P+F + +F + SF ++ KSNLD+DGK P L PE + QSTW +K S + ++GE PI YGCS TQT+FN INV+ GVGLLSTP T+ Q GW S V++ FAV+CCYTA L++YCFESREGII+YPD+GEAAFGR+GR+ VSI+LYTELYSYCVEFI +EGDNLT LFPG SLD LDSMH+F ++TAL++LPTVWLKD+R+ISYLS GGVVAT++I++C+ +G VGFHHTG+ V W+GIP IGVYGFC +GHSVFPNIYQSMADK QF KA+ ICF LC+++YGG A+MGYL FG TLSQITLNMPP A SK+ALWTTVINPLT KYALL+ PLARS+EELLPD + S WCF LLR LV STV VAF++PFFGK Sbjct: 68 RAQPDS-FSSQQWPQSYKETTDSYTIAAAPNFESVLRGPSFIYSSFDNRSKSNLDIDGKTPFLSAPEGIR-------------QSTWWEKASVERLVSGELPIGYGCSFTQTIFNGINVIAGVGLLSTPFTVNQAGWMSLAVMLLFAVMCCYTATLLRYCFESREGIITYPDVGEAAFGRYGRIAVSIILYTELYSYCVEFITLEGDNLTSLFPGTSLDLGGFKLDSMHMFGVLTALIILPTVWLKDLRIISYLSGGGVVATILIMICVFCVGTIDSVGFHHTGQLVKWNGIPFAIGVYGFCFAGHSVFPNIYQSMADKKQFTKALIICFVLCVLIYGGTASMGYLMFGDGTLSQITLNMPPGAFASKVALWTTVINPLTKYPFCQNYLAYESFKICHGLIKCSNPFSLAFLNSNKYALLMNPLARSLEELLPDRISSSYWCFMLLRTTLVASTVCVAFLVPFFGK 519
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: M4DKC0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra016949 PE=4 SV=1) HSP 1 Score: 555.444 bits (1430), Expect = 3.926e-178 Identity = 272/430 (63.26%), Postives = 332/430 (77.21%), Query Frame = 2 Query: 482 TFTSQ-QWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIA-YGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762 TF SQ QWPQSF+ET D YTI ASP FG + +F SF Q KSNLD++ K PLLPE E D S QS WS K SFA++L PI YGCS TQT+FNAINVM GVGLLSTP T+ + GWAS ++L+ FAV+CCYTA LMK CFE++ GII+YPD+GEAAFG++GR+ + ++LYTELYSYCVEFII+EGDNLT LFPG S+DW + +DS HLF I TALVVLPTVWLKD+R+ISYLSAGGV+AT++I + +LG GG+GF+HTG AV W+GIP IG+YGFC+SGHSVFPNIYQSMADK++F KA+ F LC++LYGGVA MGY FG++TLSQITLNMP SK+A WTTV++P TKYALL+ PLARSIEELLP+ + +++WCF LLR LV S+V AF++PFFG V L+ Sbjct: 55 TFISQVQWPQSFRETTDSYTIAASPIFGSLLSNPSFYTPSFYRQSKSNLDVESKAPLLPERN-----EESDKASVTQSVWSHKGSFAEEL----PIGGYGCSFTQTIFNAINVMAGVGLLSTPFTVKEAGWASMVILLLFAVICCYTATLMKDCFEAKTGIITYPDIGEAAFGKYGRILICVILYTELYSYCVEFIILEGDNLTGLFPGTSIDWLGIRIDSKHLFGIFTALVVLPTVWLKDLRIISYLSAGGVIATVLIAVSTFFLGTTGGIGFNHTGPAVKWNGIPFAIGIYGFCYSGHSVFPNIYQSMADKTKFNKAVITTFILCVLLYGGVAIMGYCMFGEATLSQITLNMPKGLFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERISENIWCFLLLRTALVASSVCSAFLIPFFGLVMALI 475
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: O80668_ARATH (Expressed protein OS=Arabidopsis thaliana GN=At2g41190 PE=2 SV=2) HSP 1 Score: 555.058 bits (1429), Expect = 6.264e-178 Identity = 269/428 (62.85%), Postives = 333/428 (77.80%), Query Frame = 2 Query: 485 FTSQ-QWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQKSNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIA-YGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762 F SQ QWPQSF+ET D YTI ASP FG + SN F + + +SNLD++ K PLLPE D S QS WS K SFA++L PI YGCSV QT+FNAINVM GVGLLSTP+T+ + GWAS ++L+ FAV+CCYTA LMK CFE++ GII+YPD+GEAAFG++GR+ + ++LYTELYSYCVEFII+EGDNLT LFPG SLD LDS HLF I+TAL+VLPTVWLKD+R+ISYLSAGGV+AT +I + + +LG GG+GFHHTG+AV W+GIP IG+YGFC+SGHSVFPNIYQSMADK++F KA+ CF +C++LYGGVA MGYL FG++TLSQITLNMP SK+A WTTV++P TKYALL+ PLARSIEELLP+ + +++WCF LLR LV S+V AF++PFFG + L+ Sbjct: 61 FISQVQWPQSFRETTDSYTIAASPIFGSLR--SNPPSF-YRASRSNLDVESKAPLLPERHDDS-----DKASATQSAWSHKGSFAEEL----PIGGYGCSVIQTIFNAINVMAGVGLLSTPYTVKEAGWASMVILLLFAVICCYTATLMKDCFENKTGIITYPDIGEAAFGKYGRILICMLLYTELYSYCVEFIILEGDNLTGLFPGTSLDLLGFRLDSKHLFGILTALIVLPTVWLKDLRIISYLSAGGVIATALIAVSVFFLGTTGGIGFHHTGQAVKWNGIPFAIGIYGFCYSGHSVFPNIYQSMADKTKFNKAVITCFIICVLLYGGVAIMGYLMFGEATLSQITLNMPQDQFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSVCSAFLIPFFGLMMALI 476
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: A0A0B2QR79_GLYSO (Vacuolar amino acid transporter 1 (Fragment) OS=Glycine soja GN=glysoja_033056 PE=4 SV=1) HSP 1 Score: 555.058 bits (1429), Expect = 6.932e-178 Identity = 278/471 (59.02%), Postives = 336/471 (71.34%), Query Frame = 2 Query: 464 RGGPSTTFTSQQWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLL--PENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLT-----------------------------------KYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762 R P + F+SQQWPQS+KET D YTI A+P+F + +F + SF ++ KSNLD+DGK P L PE + QSTW +K S + ++GE PI YGCS TQT+FN INV+ GVGLLSTP T+ Q GW S V++ FAV+CCYTA L++YCFESREGII+YPD+GEAAFGR+GR+ VSI+LYTELYSYCVEFI +EGDNLT LFPG SLD LDSMH+F ++TAL++LPTVWLKD+R+ISYLS GGVVAT++I++C+ +G VGFHHTG+ V W+GIP IGVYGFC +GHSVFPNIYQSMADK QF KA+ ICF LC+++YGG A+MGYL FG TLSQITLNMPP A SK+ALWTTVINPLT KYALL+ PLARS+EELLPD + S WCF LLR LV STV VAF++PFFG V L+ Sbjct: 28 RAQPDS-FSSQQWPQSYKETTDSYTIAAAPNFESVLRGPSFIYSSFDNRSKSNLDIDGKTPFLSAPEGIR-------------QSTWWEKASVERLVSGELPIGYGCSFTQTIFNGINVIAGVGLLSTPFTVNQAGWMSLAVMLLFAVMCCYTATLLRYCFESREGIITYPDVGEAAFGRYGRIAVSIILYTELYSYCVEFITLEGDNLTSLFPGTSLDLGGFKLDSMHMFGVLTALIILPTVWLKDLRIISYLSGGGVVATILIMICVFCVGTIDSVGFHHTGQLVKWNGIPFAIGVYGFCFAGHSVFPNIYQSMADKKQFTKALIICFVLCVLIYGGTASMGYLMFGDGTLSQITLNMPPGAFASKVALWTTVINPLTKYPFCQNYLAYESFKICHGLIKCSNPFSLAFLNSNKYALLMNPLARSLEELLPDRISSSYWCFMLLRTTLVASTVCVAFLVPFFGLVMALI 484 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 16
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BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093636 ID=g.barbadense_cottongen_reftransV1_0093636; Name=g.barbadense_cottongen_reftransV1_0093636; organism=Gossypium barbadense; type=contig; length=4567bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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