g.barbadense_cottongen_reftransV1_0093636, g.barbadense_cottongen_reftransV1_0093636 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0093636
Unique Nameg.barbadense_cottongen_reftransV1_0093636
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length4567
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.716e-9
Identity = 82/344 (23.84%), Postives = 160/344 (46.51%), Query Frame = 2
Query:  788 TVFNAINVMVGVGLLSTPHTIAQGGWA-SFLVLIFFAVVCCYT---AILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELY---SYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATL----VIVLCLLYLGAAGGVGFHHTGKAVNWSGIPV----VIGVYGFCHSGHSV-------FPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQI--TLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPD--HVVDSLWCFFLLRALLVFSTVGVAFVMPFF 1741
            + F+ +  +VG G+L  P+ +++ GW    +VLI   V+  YT    I M   FE +     Y ++G+AAFG+  +L + IV+  +L    S C+ +++  G++L ++      D+    L   H   I  +   + ++ LK+   IS +S    V ++    +  +  L  G A  V + +  K  N + +P+     +G   F ++GH+V        P+  ++ + +  +K A+ + + +    Y  VA +G+  FG +    I  TL  P   ++  +A    +I+ +  Y +  +P+   IE ++    H   +    F +R   V +T+G+A  +P F
Sbjct:   41 SAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFEGKR-FDRYHELGQAAFGK--KLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKVRHFILIFASSQFVLSL-LKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGY--KRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAI-VAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGPKGLII--VANIFVIIHLMGSYQVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMGIAVALPHF 375          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: ANT1_ARATH (Amino acid transporter ANT1 OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.014e-9
Identity = 88/369 (23.85%), Postives = 144/369 (39.02%), Query Frame = 2
Query:  776 SVTQTVFNAINVMVGVGLLSTPHTIAQGGW-ASFLVLIFFAVVCCYTAILMKYCFESREGII------SYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLY-----LGAAGGVGF-HHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLT-KYALLLIPLARSIEELLPDHVVD----------------SLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLLSLNTLDLVKF 1792
            S  QT+ N I  +VG G+L  P+     GW A  L +I       Y  +L+  C +  E         +Y D+G    G  GR     +++T      V +++  G NL+ +F    L        SM  F ++   + +   W+  +  +S  S    +   +I +C +      +   G   F   T  +    G+P   GV  FC  G ++   +  SM ++  F K +         +Y      GY+ +G  T   ITLN+P     S IA+   +   LT  + +++ PL   IE+ L    +D                S +  F  R LLV     +A ++P FG    L+      L+ F
Sbjct:   32 SALQTLGNIIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFATYYCMLLLIQCRDKLESEEGEEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLVFIGRNLSSIFSSYGL--------SMVSFILILVPIEVGLSWITSLSALSPFSIFADICN-IIAMCFVVKENVEMVIEGDFSFSDRTAISSTIGGLPFAGGVAVFCFEGFAMTLALESSMREREAFPKLLAKVLAGITFVYVLFGFCGYMAYGDQTKDIITLNLPNNW--SAIAVQIGLCVGLTFTFPIMVHPLNEIIEQKLKR--IDWLQKHHNGYSNETGSVSKFAIFTTRTLLVVGLAAIASLVPGFGTFASLVGSTLCALISF 387          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 9.942e-8
Identity = 85/347 (24.50%), Postives = 154/347 (44.38%), Query Frame = 2
Query:  788 TVFNAINVMVGVGLLSTPHTIAQGGWA-SFLVLIFFAVVCCYTAILMKYCFESREG--IISYPDMGEAAFGRFGRLF--VSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVV-----ATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPV----VIGVYGFCHSGHSV-------FPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNM-PPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCF-------FLLRALLVFSTVGVAFVMPFF 1741
            + F+ +  +VG G+L  P+ +++ GW    +VLI   V+  YT   M    E  EG     Y ++G+AAFG+   L+  V + L  E+ S C+ +++  G +L  +      D        +  F ++ A        LK+   IS +S    V     +T+  V  L      G V + +  +    + +P+     +G   F ++GH+V        P+  ++ + +  +K A+ + + +    Y  VA +G+  FG S    I  ++  P ALV  +A    VI+ L  Y +  +P+   IE      V+  +W F       F +R   V +T+G+A  +P++
Sbjct:   39 SAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEI-SVCIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGATTGSVEYGYRKRT---TSVPLAFLSALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAV-VAYIIVAFCYFPVALVGFKTFGNSVEESILESLTKPTALVI-VANMFVVIHLLGSYQVYAMPVFDMIES-----VMIRIWHFSPTRVLRFTIRWTFVAATMGIAVGLPYY 374          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: S36A4_MOUSE (Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.984e-7
Identity = 78/340 (22.94%), Postives = 128/340 (37.65%), Query Frame = 2
Query:  614 SNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWA----SFLVLIFFAVVCCYTAILMKY--CFESREGIISYPDMGEAAF-----------GRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAI--------VTALVVLPTVWL-------KDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMP 1537
              LD+D   PL+ E     S    D          QKH    QL G+    +G S  QT+ + +   +G GLL  P  I   G      S + +   +V C +  +   +  C   ++  + Y D    A              +GR  V   L      +C  +I+   +N+ ++  G     P ++  S    A         V  L  LP + L       K++ ++S+L+   + A+LVI+   +          H+      W   P+  G   F   G  V   +   M +  +F +A+ I   +  VLY  +A +GY+ F       ITLN+P
Sbjct:   13 EELDMDVMRPLINEQNFDGSS---DEEQEQTLVPIQKH---YQLDGQ----HGISFLQTLVHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFKKSTLGYSDTVSFAMEASPWSCLQRQAAWGRQVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSVDLRVYMLCFLPLIILLVFIRELKNLFVLSFLANISMAASLVIIYQYVVRNMPDP---HNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLP 339          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: S36A2_RAT (Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.973e-7
Identity = 81/363 (22.31%), Postives = 144/363 (39.67%), Query Frame = 2
Query:  650 PENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWA----SFLVLIFFAVVCCYTAI-------------LMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVS------------LDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYAL-------LLIPLARS 1630
            PE+ K    +  + ++G+ S  S+K    K +TG           QT+ + +   +G G+L  P  +   G      S LV+   A  C +  +              M Y      G+ S P+    +   +GR  VS  L      +C  +I+   DNL ++   V+            +  P ++   +++ A +  L +L  V+++++R+++  S    V+ LV ++ +      G           +W   P+  G   F      V   +   M D  +F   + +   +   LY  + A+GYL FG    + ITLN+P   L   + L   V+  L  +AL       ++IPLA S
Sbjct:   24 PESAKKVQSQDPNPVNGSSSESSEK---TKGITG----------FQTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNKPFMDYGDTVMHGLASSPNTWLQSHAHWGRHAVSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVVLTPTID-SRLYMLAFLPVLGLL--VFIRNLRVLTIFSLLANVSMLVSLVIIGQYIIQGIPDPSQLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKDARRFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLL-YVVGILCTHALQFYVPAEIIIPLAVS 369          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Match: AVT4_YEAST (Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT4 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 9.059e-7
Identity = 88/375 (23.47%), Postives = 156/375 (41.60%), Query Frame = 2
Query:  602 SSQKSNLDLDGKLPLLPEN------------RKSYSKEFLDSISGAQSTWSQKHSFAKQLTGE---FPIAYGCSVTQTVF-NAINVMVGVGLLSTPHTIAQGG-WASFLVLIFFAVVC--CYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIR---LISYLSAGGVVATLVIVLCL----LYLGAAG--GVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQAL-VSKIALWTTVINPLTKYALLLIPLARSIEE 1639
            SS  SN D+D K+P L  N             +S+  +F+   S        + S            P A G + T+ VF   +   +G G+L  P+    GG + S  +L FF +    CY  ++     +S  G+ S+ D+G   +G + R+ +   L      +   ++I    NL      V      L L  + +F  +   + +P  ++++I    L S L+   ++A LVIV+      L+    G   +G  +   A  W+   + IG   F   G  +   +  SM +  +F   + +      +L+  +A +GYL +G +  + I LN+P   + V+ I L+ ++   L+   L L P  + IE 
Sbjct:  225 SSPSSNQDID-KVPFLTRNFLEFLYVFGHFAGESFEDDFIPDSSNMMIRGEDERSALLSRPDHMKVLPSAKGTTSTKKVFLILLKSFIGTGVLFLPNAFHNGGLFFSVSMLAFFGIYSYWCYYILVQA---KSSCGVSSFGDIGLKLYGPWMRIIILFSLVITQVGFSGAYMIFTAKNLQAFLDNV-FHVGVLPLSYLMVFQTI---IFIPLSFIRNISKLSLPSLLANFFIMAGLVIVIIFTAKRLFFDLMGTPAMGVVYGLNADRWT---LFIGTAIFAFEGIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSNVQTVILLNLPQSNIFVNLIQLFYSIAIMLST-PLQLFPAIKIIEN 587          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: A0A078JQ97_BRANA (BnaCnng56610D protein OS=Brassica napus GN=BnaCnng56610D PE=4 SV=1)

HSP 1 Score: 555.829 bits (1431), Expect = 2.600e-178
Identity = 281/480 (58.54%), Postives = 349/480 (72.71%), Query Frame = 2
Query:  332 ERHNEEFVLESDVDDNEDDLEESKAXXXXXXXXXXXXXXXXXXXRGGPSTTFTSQ-QWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIA-YGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762
               ++E  +E   +D+ED  + SK  + S ++   +  D           TF SQ QWPQSF+ET D YTI ASP FG +    +F   SF  Q KSNLD++ K PLLPE       E  D  S  QS WS K SFA++L    PI  YGCS TQT+FNAINVM GVGLLSTP T+ + GWAS ++L+ FAV+CCYTA LMK CFE++ GII+YPD+GEAAFG++GR+ + ++LYTELYSYCVEFII+EGDNLT LFPG S+DW  + +DS HLF I TALVVLPTVWLKD+R+ISYLSAGGV+AT++I +   +LG  GG+GFHHTG AV W+GIP  IG+YGFC+SGHSV PNIYQSMADK++F KA+   F LC+ LYGGVA MGY  FG++TLSQITLNMP     SK+A WTTV++P TKYALL+ PLARSIEELLP+ + +++WCF LLR  LV S+V  AF++PFFG V  L+
Sbjct:    4 NNKDKEKKIEFTFEDDEDLEDTSKYENDSDNTDQSDLGDLPGDDDNNNDDTFISQVQWPQSFRETTDSYTIAASPIFGSLLSNPSFYTPSFYRQSKSNLDVESKAPLLPERN-----EESDKASVTQSVWSHKGSFAEEL----PIGGYGCSFTQTIFNAINVMAGVGLLSTPFTVKEAGWASMVILLLFAVICCYTASLMKDCFEAKTGIITYPDIGEAAFGKYGRILICVILYTELYSYCVEFIILEGDNLTGLFPGTSIDWLGIRIDSKHLFGIFTALVVLPTVWLKDLRIISYLSAGGVIATVLIAVSTFFLGTTGGIGFHHTGPAVKWNGIPFAIGIYGFCYSGHSVIPNIYQSMADKTKFNKAVITTFILCVFLYGGVAIMGYCMFGEATLSQITLNMPKGLFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERISENIWCFLLLRTALVASSVCSAFLIPFFGLVMALI 474          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: K7LIA9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 555.444 bits (1430), Expect = 3.200e-178
Identity = 277/466 (59.44%), Postives = 334/466 (71.67%), Query Frame = 2
Query:  464 RGGPSTTFTSQQWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLL--PENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLT-----------------------------------KYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGK 1747
            R  P + F+SQQWPQS+KET D YTI A+P+F  +    +F + SF ++ KSNLD+DGK P L  PE  +             QSTW +K S  + ++GE PI YGCS TQT+FN INV+ GVGLLSTP T+ Q GW S  V++ FAV+CCYTA L++YCFESREGII+YPD+GEAAFGR+GR+ VSI+LYTELYSYCVEFI +EGDNLT LFPG SLD     LDSMH+F ++TAL++LPTVWLKD+R+ISYLS GGVVAT++I++C+  +G    VGFHHTG+ V W+GIP  IGVYGFC +GHSVFPNIYQSMADK QF KA+ ICF LC+++YGG A+MGYL FG  TLSQITLNMPP A  SK+ALWTTVINPLT                                   KYALL+ PLARS+EELLPD +  S WCF LLR  LV STV VAF++PFFGK
Sbjct:   68 RAQPDS-FSSQQWPQSYKETTDSYTIAAAPNFESVLRGPSFIYSSFDNRSKSNLDIDGKTPFLSAPEGIR-------------QSTWWEKASVERLVSGELPIGYGCSFTQTIFNGINVIAGVGLLSTPFTVNQAGWMSLAVMLLFAVMCCYTATLLRYCFESREGIITYPDVGEAAFGRYGRIAVSIILYTELYSYCVEFITLEGDNLTSLFPGTSLDLGGFKLDSMHMFGVLTALIILPTVWLKDLRIISYLSGGGVVATILIMICVFCVGTIDSVGFHHTGQLVKWNGIPFAIGVYGFCFAGHSVFPNIYQSMADKKQFTKALIICFVLCVLIYGGTASMGYLMFGDGTLSQITLNMPPGAFASKVALWTTVINPLTKYPFCQNYLAYESFKICHGLIKCSNPFSLAFLNSNKYALLMNPLARSLEELLPDRISSSYWCFMLLRTTLVASTVCVAFLVPFFGK 519          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: M4DKC0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra016949 PE=4 SV=1)

HSP 1 Score: 555.444 bits (1430), Expect = 3.926e-178
Identity = 272/430 (63.26%), Postives = 332/430 (77.21%), Query Frame = 2
Query:  482 TFTSQ-QWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIA-YGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762
            TF SQ QWPQSF+ET D YTI ASP FG +    +F   SF  Q KSNLD++ K PLLPE       E  D  S  QS WS K SFA++L    PI  YGCS TQT+FNAINVM GVGLLSTP T+ + GWAS ++L+ FAV+CCYTA LMK CFE++ GII+YPD+GEAAFG++GR+ + ++LYTELYSYCVEFII+EGDNLT LFPG S+DW  + +DS HLF I TALVVLPTVWLKD+R+ISYLSAGGV+AT++I +   +LG  GG+GF+HTG AV W+GIP  IG+YGFC+SGHSVFPNIYQSMADK++F KA+   F LC++LYGGVA MGY  FG++TLSQITLNMP     SK+A WTTV++P TKYALL+ PLARSIEELLP+ + +++WCF LLR  LV S+V  AF++PFFG V  L+
Sbjct:   55 TFISQVQWPQSFRETTDSYTIAASPIFGSLLSNPSFYTPSFYRQSKSNLDVESKAPLLPERN-----EESDKASVTQSVWSHKGSFAEEL----PIGGYGCSFTQTIFNAINVMAGVGLLSTPFTVKEAGWASMVILLLFAVICCYTATLMKDCFEAKTGIITYPDIGEAAFGKYGRILICVILYTELYSYCVEFIILEGDNLTGLFPGTSIDWLGIRIDSKHLFGIFTALVVLPTVWLKDLRIISYLSAGGVIATVLIAVSTFFLGTTGGIGFNHTGPAVKWNGIPFAIGIYGFCYSGHSVFPNIYQSMADKTKFNKAVITTFILCVLLYGGVAIMGYCMFGEATLSQITLNMPKGLFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERISENIWCFLLLRTALVASSVCSAFLIPFFGLVMALI 475          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: O80668_ARATH (Expressed protein OS=Arabidopsis thaliana GN=At2g41190 PE=2 SV=2)

HSP 1 Score: 555.058 bits (1429), Expect = 6.264e-178
Identity = 269/428 (62.85%), Postives = 333/428 (77.80%), Query Frame = 2
Query:  485 FTSQ-QWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQKSNLDLDGKLPLLPENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIA-YGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLTKYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762
            F SQ QWPQSF+ET D YTI ASP FG +   SN   F + + +SNLD++ K PLLPE          D  S  QS WS K SFA++L    PI  YGCSV QT+FNAINVM GVGLLSTP+T+ + GWAS ++L+ FAV+CCYTA LMK CFE++ GII+YPD+GEAAFG++GR+ + ++LYTELYSYCVEFII+EGDNLT LFPG SLD     LDS HLF I+TAL+VLPTVWLKD+R+ISYLSAGGV+AT +I + + +LG  GG+GFHHTG+AV W+GIP  IG+YGFC+SGHSVFPNIYQSMADK++F KA+  CF +C++LYGGVA MGYL FG++TLSQITLNMP     SK+A WTTV++P TKYALL+ PLARSIEELLP+ + +++WCF LLR  LV S+V  AF++PFFG +  L+
Sbjct:   61 FISQVQWPQSFRETTDSYTIAASPIFGSLR--SNPPSF-YRASRSNLDVESKAPLLPERHDDS-----DKASATQSAWSHKGSFAEEL----PIGGYGCSVIQTIFNAINVMAGVGLLSTPYTVKEAGWASMVILLLFAVICCYTATLMKDCFENKTGIITYPDIGEAAFGKYGRILICMLLYTELYSYCVEFIILEGDNLTGLFPGTSLDLLGFRLDSKHLFGILTALIVLPTVWLKDLRIISYLSAGGVIATALIAVSVFFLGTTGGIGFHHTGQAVKWNGIPFAIGIYGFCYSGHSVFPNIYQSMADKTKFNKAVITCFIICVLLYGGVAIMGYLMFGEATLSQITLNMPQDQFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSVCSAFLIPFFGLMMALI 476          
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Match: A0A0B2QR79_GLYSO (Vacuolar amino acid transporter 1 (Fragment) OS=Glycine soja GN=glysoja_033056 PE=4 SV=1)

HSP 1 Score: 555.058 bits (1429), Expect = 6.932e-178
Identity = 278/471 (59.02%), Postives = 336/471 (71.34%), Query Frame = 2
Query:  464 RGGPSTTFTSQQWPQSFKETMDPYTITASPSFGLIGGISNFRHFSFSSQ-KSNLDLDGKLPLL--PENRKSYSKEFLDSISGAQSTWSQKHSFAKQLTGEFPIAYGCSVTQTVFNAINVMVGVGLLSTPHTIAQGGWASFLVLIFFAVVCCYTAILMKYCFESREGIISYPDMGEAAFGRFGRLFVSIVLYTELYSYCVEFIIMEGDNLTRLFPGVSLDWPFLNLDSMHLFAIVTALVVLPTVWLKDIRLISYLSAGGVVATLVIVLCLLYLGAAGGVGFHHTGKAVNWSGIPVVIGVYGFCHSGHSVFPNIYQSMADKSQFKKAMQICFFLCIVLYGGVAAMGYLEFGQSTLSQITLNMPPQALVSKIALWTTVINPLT-----------------------------------KYALLLIPLARSIEELLPDHVVDSLWCFFLLRALLVFSTVGVAFVMPFFGKVWYLL 1762
            R  P + F+SQQWPQS+KET D YTI A+P+F  +    +F + SF ++ KSNLD+DGK P L  PE  +             QSTW +K S  + ++GE PI YGCS TQT+FN INV+ GVGLLSTP T+ Q GW S  V++ FAV+CCYTA L++YCFESREGII+YPD+GEAAFGR+GR+ VSI+LYTELYSYCVEFI +EGDNLT LFPG SLD     LDSMH+F ++TAL++LPTVWLKD+R+ISYLS GGVVAT++I++C+  +G    VGFHHTG+ V W+GIP  IGVYGFC +GHSVFPNIYQSMADK QF KA+ ICF LC+++YGG A+MGYL FG  TLSQITLNMPP A  SK+ALWTTVINPLT                                   KYALL+ PLARS+EELLPD +  S WCF LLR  LV STV VAF++PFFG V  L+
Sbjct:   28 RAQPDS-FSSQQWPQSYKETTDSYTIAAAPNFESVLRGPSFIYSSFDNRSKSNLDIDGKTPFLSAPEGIR-------------QSTWWEKASVERLVSGELPIGYGCSFTQTIFNGINVIAGVGLLSTPFTVNQAGWMSLAVMLLFAVMCCYTATLLRYCFESREGIITYPDVGEAAFGRYGRIAVSIILYTELYSYCVEFITLEGDNLTSLFPGTSLDLGGFKLDSMHMFGVLTALIILPTVWLKDLRIISYLSGGGVVATILIMICVFCVGTIDSVGFHHTGQLVKWNGIPFAIGVYGFCFAGHSVFPNIYQSMADKKQFTKALIICFVLCVLIYGGTASMGYLMFGDGTLSQITLNMPPGAFASKVALWTTVINPLTKYPFCQNYLAYESFKICHGLIKCSNPFSLAFLNSNKYALLMNPLARSLEELLPDRISSSYWCFMLLRTTLVASTVCVAFLVPFFGLVMALI 484          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 16
Match NameE-valueIdentityDescription
LHTL3_ARATH1.716e-923.84Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
ANT1_ARATH5.014e-923.85Amino acid transporter ANT1 OS=Arabidopsis thalian... [more]
LHTL4_ARATH9.942e-824.50Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
S36A4_MOUSE1.984e-722.94Proton-coupled amino acid transporter 4 OS=Mus mus... [more]
S36A2_RAT6.973e-722.31Proton-coupled amino acid transporter 2 OS=Rattus ... [more]
AVT4_YEAST9.059e-723.47Vacuolar amino acid transporter 4 OS=Saccharomyces... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0093636 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078JQ97_BRANA2.600e-17858.54BnaCnng56610D protein OS=Brassica napus GN=BnaCnng... [more]
K7LIA9_SOYBN3.200e-17859.44Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M4DKC0_BRARP3.926e-17863.26Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
O80668_ARATH6.264e-17862.85Expressed protein OS=Arabidopsis thaliana GN=At2g4... [more]
A0A0B2QR79_GLYSO6.932e-17859.02Vacuolar amino acid transporter 1 (Fragment) OS=Gl... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013057Amino acid transporter, transmembrane domainPFAMPF01490Aa_transcoord: 155..482
e-value: 7.9E-50
score: 169.6
NoneNo IPR availablePANTHERPTHR22950AMINO ACID TRANSPORTERcoord: 8..72
coord: 154..479
NoneNo IPR availablePANTHERPTHR22950:SF269EXPRESSED PROTEINcoord: 8..72
coord: 154..479
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 361..371
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 320..338
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..250
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..290
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 339..360
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 452..476
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 412..431
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 372..392
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 393..411
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 432..451
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 477..496
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..183
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..208
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 251..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 297..319
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 291..296
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 209..227
NoneNo IPR availableTMHMMTMhelixcoord: 270..292
NoneNo IPR availableTMHMMTMhelixcoord: 185..207
NoneNo IPR availableTMHMMTMhelixcoord: 336..355
NoneNo IPR availableTMHMMTMhelixcoord: 228..250
NoneNo IPR availableTMHMMTMhelixcoord: 148..170
NoneNo IPR availableTMHMMTMhelixcoord: 375..397
NoneNo IPR availableTMHMMTMhelixcoord: 455..477
NoneNo IPR availableTMHMMTMhelixcoord: 412..434
NoneNo IPR availableTMHMMTMhelixcoord: 299..321

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0093636 ID=g.barbadense_cottongen_reftransV1_0093636; Name=g.barbadense_cottongen_reftransV1_0093636; organism=Gossypium barbadense; type=contig; length=4567bp
CTTGAAAGGAAAACAAACAATTTCCATAATTATCTGATGTAACACGTCAC
TCATGCCTTCTGGATTTTACGCGAAAACCTTCGTACCGATCCTTATTTCT
CTCCATTGATACTTTCATTCTGAACTCTTAACTAGACTTTACAGCCATCC
ATTCACCCTGAAATCCTGCATTTTTATTTCTTAAAGCAAACGATCAAAAC
AATCCTCCCGCTGGAACCCCATCTTCATTCCCATTGATTTTTTTCCTCTT
TCTGTTTCTCACTCTTGATTCAGCACTCATATCCCGAATATTGTCTTCTG
TTATTAATCATTTATGGCTGACGAGGTTAAGGAGAGGCATAATGAAGAGT
TCGTCCTGGAAAGTGATGTTGACGATAATGAGGACGACCTTGAAGAGAGC
AAGGCAGGGGACGGCAGCAGCAGCAGCAGCAACTACAATAGTGATGATGA
CGGTGAGGGAGGCCGGGGAGGTCCTTCCACCACTTTCACTTCACAGCAAT
GGCCTCAGAGCTTCAAAGAGACAATGGATCCTTATACAATCACAGCATCA
CCAAGCTTTGGACTTATTGGGGGAATTTCAAATTTTAGACATTTTAGTTT
TAGCAGTCAGAAAAGTAATTTGGACCTGGATGGAAAGCTTCCTCTTCTGC
CTGAAAATCGAAAGAGTTATTCTAAGGAGTTTTTAGATAGCATCTCAGGA
GCACAGTCAACTTGGTCACAGAAGCATTCATTTGCTAAGCAACTTACTGG
AGAATTTCCCATAGCTTACGGATGTAGCGTGACCCAAACAGTCTTTAATG
CAATAAATGTAATGGTTGGAGTTGGGCTTCTATCAACACCTCATACAATA
GCACAAGGAGGCTGGGCAAGCTTCTTGGTCCTAATCTTTTTTGCAGTTGT
ATGTTGTTATACGGCCATACTCATGAAATACTGCTTTGAAAGCAGAGAAG
GAATTATATCTTACCCTGATATGGGTGAAGCTGCCTTTGGACGATTTGGA
CGCCTTTTTGTATCTATTGTTCTCTATACAGAATTATATTCATATTGTGT
GGAATTTATTATCATGGAAGGTGATAATCTTACAAGGCTATTTCCTGGAG
TTTCTTTGGACTGGCCTTTTTTAAATCTGGATTCAATGCATCTCTTTGCA
ATTGTAACTGCCTTGGTTGTTCTACCCACTGTCTGGTTAAAAGATATCCG
TCTGATTTCATATCTTTCAGCTGGTGGGGTTGTTGCAACATTGGTGATAG
TTCTGTGTCTGCTATACCTTGGTGCAGCAGGTGGTGTTGGCTTCCATCAT
ACTGGTAAAGCTGTTAATTGGAGTGGCATTCCCGTTGTAATTGGTGTATA
TGGATTTTGTCATTCGGGACACTCTGTGTTTCCTAATATCTATCAATCAA
TGGCTGATAAATCACAATTTAAGAAAGCAATGCAAATATGTTTTTTTCTG
TGTATAGTATTGTATGGGGGTGTTGCAGCAATGGGTTACCTCGAGTTTGG
TCAAAGCACATTGTCTCAAATAACTTTGAATATGCCACCACAAGCTTTGG
TTTCCAAAATTGCATTGTGGACGACAGTTATCAATCCACTCACAAAATAT
GCATTGTTGTTGATCCCCTTGGCGAGGAGTATAGAGGAACTGCTACCAGA
TCATGTTGTAGATAGTTTATGGTGTTTCTTTCTTCTTAGAGCGCTACTTG
TCTTTTCTACCGTTGGCGTTGCATTTGTCATGCCTTTCTTTGGTAAGGTT
TGGTATTTGCTTTCTCTCAATACTCTAGATTTAGTTAAGTTTCATACTTC
ATGATGCAGTTTATCATAGAAGCTAAGAAATAATCTTAGGCAAACTTGAA
CTCTTTTATATTCTAGGAACAGTGTTTGTATTCCGTATCTTTATTTTTTC
TTTATTGTTCGCCAAAAGTATTTAATACGAAGCTTAAATATGTGAATAAC
TTTTTACTTAATACAGTGCATGTAATCATTAGTGTTTTGTTCTTTTAAAT
CTGTGCTAAGTTATGTTTGTAAGATAGCAACCTACCAAATCAGAATGCGC
ATTACCAAAAATGAAATTCAAGGATATCTACCTCATTGCCACTGTCTCTG
TTCTCTTGGTCTATAATCAATATTTCCATCTACTATTGTTTGGCTCAATT
TGCTCATTCAACTTTTATATTGGTACAATTCAATCAAAAATTAAGGGGAA
GAAATACTTGAAGGATTATTCCCTTTCAAACCTAAAACGAACAAATTTCT
AATTTGAAAAAAATGGAGTGAAAGAAAATTGTTGGTGGCAATTGTGGAAC
TATTTTCTTTATTCCTTCCTTTTACCTCTTCTATTTTTTCCTTGGTTACG
AGCAAGCAGTATTGGCTTGAGTAAGGAGTTGAACTGGCCAAGGCTTAAGG
TAGGCAAGCCAGCAATTGTCCGGACAGTTGATCAGATTTGGCCTCTCTGG
ACCGTACTGTGTTTTGCTGGACTAGTCCTTCCTAGGTGGATCCGTACTGA
GTTTAGTAGCTCCAATCTGGTCCTGTGGTCAACTCTTCTAGGCTGGCTTA
GTGATCTGGTATGGGCATGATACCAGCTTGATCATTTGTGGAGTAAAAGG
GGAATCATCTGCAAAGATCTTTTAATAGGCTAGGAACAGTAGTCAGTGGC
ATGAACTTGTACAATAGGACAAACCTGCAAGGACCTTTCACTAGGCTAGG
AACACTCGCAGAAGCAAGCTGTAGTCCTTGTTTCAAAAATATTGAATTAT
TCTTATGCAGTTAAACATTTTAGCCTGGTTAACTAGTTACTTCTGTCAGC
TCTTCTGTTGTAATACAAAGAATAACTATCTATTGAAAGCTTCTTGTCAA
ATACCGCCTCTACGAGCAATCTAATGAGTGGGACTCGATTAAGCTGGTAG
GGTTAAAGAAATAAATTCCACATTGGTATGATGCTAAAAGTTAAGCACCA
AATTAACTTTCAAAATACATTTTAGTAATAACATTGTCACAATTTTTGCC
AACAATTTTGGGAGTATGATTGTACAATGATTTGTAACAGATATTTCTAT
GTGATTTTTGGTAGCTTCAGCTAAGTTCTTAATAATTTATTATTTTCATC
CATTTCATTAAATTTATTATAAGAATTCTATGATTTATATGCGACATTGA
TCTCAGGTCTTCTGATGGCTTTAATTGGTTCTGTTCTAAGCTTCATGGTG
GTAAGTACTGTGTTCTGTTTATTATTAGAATGGAAAAACCATTTATGGAA
GCTTCATTGAAGGTAGTGAAAAAGGAAAAGAATTTATCTTTTGTAAGGAC
AACGAAATTTTCTATATTTTCAGGCTATAATAATGCCAGCACTGTGTTTC
ATAAAGATTGTCGGGAGAAAAGCTTCAATGACAGATGTAAGCATAATCAA
CTTGTTACATGCATTTATGCTTGTTTTCTTTTTCTTTTTTTCAAAAATAG
AACACTTGTTACTTGCATTTAATTTGTCTTCTAAATATATTCTAATGCAA
ACTGGAATAGGAAAAGTAGAATATTTGAGAACAAAAGTAATAAATTGATG
TATCCATTGAACCACCATTGAGATTATAATTGAATAATAATAAGTTAACA
TTGGTCGCTTGCATCAATTATCTTCTAAATATGGAATGCATACTACATCA
CCTTTCATGTTGCTTGATGCATTGAAGCTGACCTAAATTTTACTTTGAGC
ATGGTTGATACTAGTAATATTGGCAGCGGAACACGAATATAATGACCTCA
TGTACATACATATACACATAAAAATGAAATTCACATACGCATACACATAC
AGATGTACACCTAAATGTGCATGTATCTCTTACCACGTCAGCTGATAGCT
GATCGGCTGAAGTAGAGTTTAGGTTTAAGATTTTATATCAACTGATACTT
TCTGGAATAAGGTGAGCTATTGGTTCCGTTAATTCCAAGTTGTAACAGTT
CAGTGAATGCAATGTTAATGCTGACATCATGAGGAGATTGTATTCAGATA
AATTTGGTGGTTTATAATTTACAACTTTTAAAATTTGATACTACAGCATA
TAGTGTTCTTTTATGTTGTTGGTCTCTTATATGAGAAAGCCCTTGTTGAG
AAATTACATTGTGTTTAGGATGAACTCAAGCTGTACCATGCTTAGTGATC
TTCTTGGGTTGCTTAATCTTCATTTTGATTAACTTTATATGCACATATAC
CTATATACTTGCTTACTTTGCTTTAATCAAGCAAAGCTTTTTAACATATA
AACAGATTGTTTTGAGTTCAACAGCAGCTGTAATCGCCATCATCTGTGCT
ATTTTTGGGACATATTCTGCATTGCAAGGGATTGCGAGCAATTACTAATA
CCTAGAGAATAGCTTCCTGCTGGTTTCCGATATGTAGATTGTCATCATGG
GGTTGCTCATTCTTCCTGCATCTACGACTTTCTGCTGGGAAAATGGATCT
TTCAGTAGCTAGCTGCCTGGATAAATTTAGTTCCAGATACATTATCGTAA
AGCATTACAGAATATTAGGATTAAGACATGCTCATGCTCATGCTCATGCT
CATGCTCATGCTCATGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM