g.barbadense_cottongen_reftransV1_0093631, g.barbadense_cottongen_reftransV1_0093631 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: A0A067KEL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17051 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.998e-43 Identity = 128/358 (35.75%), Postives = 180/358 (50.28%), Query Frame = 3 Query: 1110 AEYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTTQGNL-----ITNSHC--MASYSS-----FLKHT-TMNMTDMGSEAQKHIAQNSNRGTD-KFPFA-SNTSP----LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLFS---PDVDSSNKMNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNT-DSTFLEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGSPV-DQQFCLSPKLPCSELTGRMKRVG 2078 AEYM+ TLWDR NDA+NTIIR DE++ETGE L PCIEAALNLGC R RSQR+ +PRSYL+ + + L + C + S+ S F + T +N SE+ + + SN +P NTSP L + N SVYPL+YGN+ +++QR K+ SN I EPA MGV+H FS ++ S+ ++ D+ N + P CDLSLRLG + PC+S + +E ++ S+ L+ K S ++ L P N D +++ G N+D T KRK + V D QFC P+ P + GR++R G Sbjct: 73 AEYMNPDTLWDRLNDAVNTIIRRDENSETGEHLPPCIEAALNLGCIPVRASRSQRHSNPRSYLSSRVQEPASAPLRVLEKANDKQCPQLTSFQSSSQINFARSTGAVNSAFPVSESNLRLTETSNVAAPCSYPLTYENTSPGRIQLMTQDTNKQLNFGSVYPLYYGNNFHIKQQRLVSQFPEKTNSNNIVVGKPISTSVREPAEMGVLHDFFSCTGAEI-SAKSISHADMGNGNKKPLGTQCDLSLRLGLFADPCMSVERNSFQETEDDGSSSSLDRGKFSDFCLHKNKELRLSPSRNTDIIFESCPIKQSSVGEDENLDTTFRKRKAPFSDNVEDGQFCWQPEFPSNRFIGRIERPG 429 HSP 2 Score: 140.198 bits (352), Expect = 5.308e-32 Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1 Query: 646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFF---TFW 882 MPRPGPRPY C RRAWHSDRHQP+RGS+I++IFRVVNE HS ATKKNKEWQEKLPIVVLKAE+IMYSKANSE + T W Sbjct: 1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNETHSVATKKNKEWQEKLPIVVLKAEEIMYSKANSEAEYMNPDTLW 82
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: A0A061GPP2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038116 PE=4 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.268e-39 Identity = 115/341 (33.72%), Postives = 165/341 (48.39%), Query Frame = 3 Query: 1110 AEYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAE-------------GTTQGNLITNSHCMASYSSFLKHTTMNMTDMGSEAQKHIAQNSNRGTDKFPFASNTSP-----LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLF-SPDVDSSNK-MNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNTD-STFLEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGS-PVDQQFCLSP 2033 +EYM+ +TLWDR NDAINTIIR DESTETGELL PC+EAALNLGC R RSQR+C PR+YL +A+ G + ++ H + ++ + N++ S+ +H +PF S+ P L PN VYPL+YG H + E + G + S+ I +P MG + +LF S DVD K + Q D+R+T+ CDLSLRLG S PC+ + E ++ S+ E K++ + P N + +S + ++ N+ AT+ KRK +G D+QFC P Sbjct: 73 SEYMNPETLWDRVNDAINTIIRRDESTETGELLPPCVEAALNLGCHPVRASRSQRHCIPRTYLTPRAQEPISAAPRVLDKGGEERCPQLSPVHSGSQFTRIATNVNSNISV--SQTNRH----------SYPFLSDNCPPGHDQLTRMETNTRPNLGQVYPLYYGIHYQNVESQTGSPVQENIASDNIIVGRPIGTSVAQPVEMGSLQNLFSSSDVDVGGKRIGQQDIRHTNEKSFGTECDLSLRLGLFSDPCMHVEKNSIGETEDVGPSSSQEGGKVNEAFQQKSKEFCFFPERNVNDHYESFSRKWIIDIEGRNLGATMRKRKATFGGNSEDEQFCWQP 401 HSP 2 Score: 119.013 bits (297), Expect = 3.783e-25 Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFF---TFW 882 MPRPGPRPY C RRAWHS+RHQP+RGS+I++I R+ + HS+ATKKNKEWQ+K+ V+ KAE+IMYSKANSE + T W Sbjct: 1 MPRPGPRPYECVRRAWHSERHQPIRGSIIQQILRLAIDTHSTATKKNKEWQDKILTVIFKAEEIMYSKANSESEYMNPETLW 82
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: F6HHA0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05510 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.253e-38 Identity = 107/253 (42.29%), Postives = 139/253 (54.94%), Query Frame = 3 Query: 1113 EYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTTQG-----NLITNSHCMA----SYSSFLKHTTMNM--TDMGSEAQKHIAQNSNRGTDK-FPFASNTSPLASN----VEKHPP-NTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVI-HSLFSPDVDSS--NKMNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCL 1778 EYMD+ TLWDR NDA+NTIIR DESTETGELL PCIEAALNLGC R RSQR+ +PRSYL + + T + N C S + L +NM T + ++ +H+ QN++ T + F F PL SN VE + P N SVYPL+YG H + EE G+ + + +N + EP+ MG+I +LFS D + NK Q + R+T CDLSLRLG S PC+ Sbjct: 74 EYMDLGTLWDRVNDAVNTIIRRDESTETGELLPPCIEAALNLGCVPVRASRSQRHNNPRSYLTHRTQEPTSVSPRVLDNAVNERCPQLQPPSAGNQLTFGRLNMDSTHLVLDSDRHVTQNNSLATTRNFHFPYENFPLGSNQSMTVETNTPLNFGSVYPLYYGTHFQNEESHLGFQMPETANANTVFVGAPIGTSIAEPSEMGIILQNLFSSDGTENVLNKNAQENFRDTCGKEPVAECDLSLRLGLSSDPCM 326 HSP 2 Score: 140.198 bits (352), Expect = 1.237e-32 Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1 Query: 646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFFTFWPL 888 MPRPGPRPY C RRAWHSDRHQPMRGS+I++IFRVV + HSSATKKN+EWQEKLPIVVLKAE+IMYSKANSE + L Sbjct: 1 MPRPGPRPYECVRRAWHSDRHQPMRGSIIQQIFRVVTDTHSSATKKNREWQEKLPIVVLKAEEIMYSKANSETEYMDLGTL 81
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: A0A067GXP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014103mg PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.991e-37 Identity = 118/359 (32.87%), Postives = 169/359 (47.08%), Query Frame = 3 Query: 1113 EYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTT-------------QGNLITNSHCMASYSSFLKHTTMNMTDMGSEAQKHIAQNSNRGT-DKFPFASNTSP--------LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLFS-PDVDSSNK-MNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNTDSTF-LEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGSPV-DQQFCLSPKLPCSELTGRMKRVG 2078 EYM++ TL DR NDA+NTIIR DESTETGELL PC+EAALNLGC R RSQR+ PR+YLN + + Q + H ++ N T + E+ + N N +P + P + +NV+ SVYPL+YG + E+ + G GIS S I EP MG + L+S D+++K + D PH CDLSLRLG PC+S S +E ++ S E NK+ L+ ++ P D P S++R E N++A++ K K ++ + D QFC P P ++ TG+++ G Sbjct: 74 EYMNLDTLRDRVNDAVNTIIRRDESTETGELLPPCVEAALNLGCIPVRASRSQRHSHPRTYLNLRPQEPAPLPPKIVDKTIEDQCPRFSPHHSGNQFNFSRSFKNANSTTLVPESSCQVIGNDNLAAPSSYPSSYENIPSRHSKMMRVDANVQL---KLGSVYPLYYGTRFQTEDTKLGSGISENVNSTTIFVGKPIGTSIPEPGEMGALPRLYSCSGSDTASKPTTKPDFLELQRRPHVTGCDLSLRLGLSGDPCMSLDRSSARETEDVGSIRSQEGNKLKDLSSERNKEFCFFPEKTADKPHESCSSKRFPEHECRNLEASIRKPKALFSDNLEDVQFCWQPGPPSNQFTGQIRGPG 429 HSP 2 Score: 132.494 bits (332), Expect = 2.102e-29 Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1 Query: 646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFFTFWPL 888 MPRPGPRPY C RRAWHS+RHQPMRGS I++IFRV +E HS+ TKKNKEWQEKLPIVVLKAE+I+YSKANSE + L Sbjct: 1 MPRPGPRPYECVRRAWHSERHQPMRGSTIQQIFRVADEFHSTQTKKNKEWQEKLPIVVLKAEEILYSKANSEDEYMNLDTL 81
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: V4UDK2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008357mg PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.991e-37 Identity = 118/359 (32.87%), Postives = 169/359 (47.08%), Query Frame = 3 Query: 1113 EYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTT-------------QGNLITNSHCMASYSSFLKHTTMNMTDMGSEAQKHIAQNSNRGT-DKFPFASNTSP--------LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLFS-PDVDSSNK-MNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNTDSTF-LEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGSPV-DQQFCLSPKLPCSELTGRMKRVG 2078 EYM++ TL DR NDA+NTIIR DESTETGELL PC+EAALNLGC R RSQR+ PR+YLN + + Q + H ++ N T + E+ + N N +P + P + +NV+ SVYPL+YG + E+ + G GIS S I EP MG + L+S D+++K + D PH CDLSLRLG PC+S S +E ++ S E NK+ L+ ++ P D P S++R E N++A++ K K ++ + D QFC P P ++ TG+++ G Sbjct: 74 EYMNLDTLRDRVNDAVNTIIRRDESTETGELLPPCVEAALNLGCIPVRASRSQRHSHPRTYLNLRPQEPAPLPPKIVDKTIEDQCPRFSPHHSGNQFNFSRSFKNANSTTLVPESSCQVIGNDNLAAPSSYPSSYENIPSRHSKMMRVDANVQL---KLGSVYPLYYGTRFQTEDTKLGSGISENVNSTTIFVGKPIGTSIPEPGEMGALPRLYSCSGSDTASKPTTKPDFLELQRRPHVTGCDLSLRLGLSGDPCMSLDRSSARETEDVGSIRSQEGNKLKDLSSERNKEFCFFPEKTADKPHESCSSKRFPEHECRNLEASIRKPKALFSDNLEDVQFCWQPGPPSNQFTGQIRGPG 429 HSP 2 Score: 132.494 bits (332), Expect = 2.102e-29 Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1 Query: 646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFFTFWPL 888 MPRPGPRPY C RRAWHS+RHQPMRGS I++IFRV +E HS+ TKKNKEWQEKLPIVVLKAE+I+YSKANSE + L Sbjct: 1 MPRPGPRPYECVRRAWHSERHQPMRGSTIQQIFRVADEFHSTQTKKNKEWQEKLPIVVLKAEEILYSKANSEDEYMNLDTL 81 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093631 ID=g.barbadense_cottongen_reftransV1_0093631; Name=g.barbadense_cottongen_reftransV1_0093631; organism=Gossypium barbadense; type=contig; length=2607bpback to top |