g.barbadense_cottongen_reftransV1_0093631, g.barbadense_cottongen_reftransV1_0093631 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0093631
Unique Nameg.barbadense_cottongen_reftransV1_0093631
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2607
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: A0A067KEL4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17051 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.998e-43
Identity = 128/358 (35.75%), Postives = 180/358 (50.28%), Query Frame = 3
Query: 1110 AEYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTTQGNL-----ITNSHC--MASYSS-----FLKHT-TMNMTDMGSEAQKHIAQNSNRGTD-KFPFA-SNTSP----LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLFS---PDVDSSNKMNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNT-DSTFLEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGSPV-DQQFCLSPKLPCSELTGRMKRVG 2078
            AEYM+  TLWDR NDA+NTIIR DE++ETGE L PCIEAALNLGC   R  RSQR+ +PRSYL+ + +      L       +  C  + S+ S     F + T  +N     SE+   + + SN      +P    NTSP    L +       N  SVYPL+YGN+  +++QR       K+ SN I           EPA MGV+H  FS    ++ S+  ++  D+ N +  P    CDLSLRLG  + PC+S   +  +E ++   S+ L+  K S      ++ L   P  N D        +++  G   N+D T  KRK  +   V D QFC  P+ P +   GR++R G
Sbjct:   73 AEYMNPDTLWDRLNDAVNTIIRRDENSETGEHLPPCIEAALNLGCIPVRASRSQRHSNPRSYLSSRVQEPASAPLRVLEKANDKQCPQLTSFQSSSQINFARSTGAVNSAFPVSESNLRLTETSNVAAPCSYPLTYENTSPGRIQLMTQDTNKQLNFGSVYPLYYGNNFHIKQQRLVSQFPEKTNSNNIVVGKPISTSVREPAEMGVLHDFFSCTGAEI-SAKSISHADMGNGNKKPLGTQCDLSLRLGLFADPCMSVERNSFQETEDDGSSSSLDRGKFSDFCLHKNKELRLSPSRNTDIIFESCPIKQSSVGEDENLDTTFRKRKAPFSDNVEDGQFCWQPEFPSNRFIGRIERPG 429          

HSP 2 Score: 140.198 bits (352), Expect = 5.308e-32
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1
Query:  646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFF---TFW 882
            MPRPGPRPY C RRAWHSDRHQP+RGS+I++IFRVVNE HS ATKKNKEWQEKLPIVVLKAE+IMYSKANSE  +    T W
Sbjct:    1 MPRPGPRPYECVRRAWHSDRHQPIRGSIIQQIFRVVNETHSVATKKNKEWQEKLPIVVLKAEEIMYSKANSEAEYMNPDTLW 82          
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: A0A061GPP2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038116 PE=4 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.268e-39
Identity = 115/341 (33.72%), Postives = 165/341 (48.39%), Query Frame = 3
Query: 1110 AEYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAE-------------GTTQGNLITNSHCMASYSSFLKHTTMNMTDMGSEAQKHIAQNSNRGTDKFPFASNTSP-----LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLF-SPDVDSSNK-MNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNTD-STFLEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGS-PVDQQFCLSP 2033
            +EYM+ +TLWDR NDAINTIIR DESTETGELL PC+EAALNLGC   R  RSQR+C PR+YL  +A+             G  +   ++  H  + ++    +   N++   S+  +H           +PF S+  P     L        PN   VYPL+YG H +  E + G  +     S+ I           +P  MG + +LF S DVD   K + Q D+R+T+       CDLSLRLG  S PC+    +   E ++   S+  E  K++       +     P  N +     +S +  ++    N+ AT+ KRK  +G    D+QFC  P
Sbjct:   73 SEYMNPETLWDRVNDAINTIIRRDESTETGELLPPCVEAALNLGCHPVRASRSQRHCIPRTYLTPRAQEPISAAPRVLDKGGEERCPQLSPVHSGSQFTRIATNVNSNISV--SQTNRH----------SYPFLSDNCPPGHDQLTRMETNTRPNLGQVYPLYYGIHYQNVESQTGSPVQENIASDNIIVGRPIGTSVAQPVEMGSLQNLFSSSDVDVGGKRIGQQDIRHTNEKSFGTECDLSLRLGLFSDPCMHVEKNSIGETEDVGPSSSQEGGKVNEAFQQKSKEFCFFPERNVNDHYESFSRKWIIDIEGRNLGATMRKRKATFGGNSEDEQFCWQP 401          

HSP 2 Score: 119.013 bits (297), Expect = 3.783e-25
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1
Query:  646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFF---TFW 882
            MPRPGPRPY C RRAWHS+RHQP+RGS+I++I R+  + HS+ATKKNKEWQ+K+  V+ KAE+IMYSKANSE  +    T W
Sbjct:    1 MPRPGPRPYECVRRAWHSERHQPIRGSIIQQILRLAIDTHSTATKKNKEWQDKILTVIFKAEEIMYSKANSESEYMNPETLW 82          
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: F6HHA0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05510 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.253e-38
Identity = 107/253 (42.29%), Postives = 139/253 (54.94%), Query Frame = 3
Query: 1113 EYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTTQG-----NLITNSHCMA----SYSSFLKHTTMNM--TDMGSEAQKHIAQNSNRGTDK-FPFASNTSPLASN----VEKHPP-NTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVI-HSLFSPDVDSS--NKMNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCL 1778
            EYMD+ TLWDR NDA+NTIIR DESTETGELL PCIEAALNLGC   R  RSQR+ +PRSYL  + +  T       +   N  C      S  + L    +NM  T +  ++ +H+ QN++  T + F F     PL SN    VE + P N  SVYPL+YG H + EE   G+ +   + +N +           EP+ MG+I  +LFS D   +  NK  Q + R+T        CDLSLRLG  S PC+
Sbjct:   74 EYMDLGTLWDRVNDAVNTIIRRDESTETGELLPPCIEAALNLGCVPVRASRSQRHNNPRSYLTHRTQEPTSVSPRVLDNAVNERCPQLQPPSAGNQLTFGRLNMDSTHLVLDSDRHVTQNNSLATTRNFHFPYENFPLGSNQSMTVETNTPLNFGSVYPLYYGTHFQNEESHLGFQMPETANANTVFVGAPIGTSIAEPSEMGIILQNLFSSDGTENVLNKNAQENFRDTCGKEPVAECDLSLRLGLSSDPCM 326          

HSP 2 Score: 140.198 bits (352), Expect = 1.237e-32
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1
Query:  646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFFTFWPL 888
            MPRPGPRPY C RRAWHSDRHQPMRGS+I++IFRVV + HSSATKKN+EWQEKLPIVVLKAE+IMYSKANSE  +     L
Sbjct:    1 MPRPGPRPYECVRRAWHSDRHQPMRGSIIQQIFRVVTDTHSSATKKNREWQEKLPIVVLKAEEIMYSKANSETEYMDLGTL 81          
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: A0A067GXP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014103mg PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.991e-37
Identity = 118/359 (32.87%), Postives = 169/359 (47.08%), Query Frame = 3
Query: 1113 EYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTT-------------QGNLITNSHCMASYSSFLKHTTMNMTDMGSEAQKHIAQNSNRGT-DKFPFASNTSP--------LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLFS-PDVDSSNK-MNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNTDSTF-LEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGSPV-DQQFCLSPKLPCSELTGRMKRVG 2078
            EYM++ TL DR NDA+NTIIR DESTETGELL PC+EAALNLGC   R  RSQR+  PR+YLN + +                Q    +  H    ++        N T +  E+   +  N N      +P +    P        + +NV+       SVYPL+YG   + E+ + G GIS    S  I           EP  MG +  L+S    D+++K   + D       PH   CDLSLRLG    PC+S   S  +E ++  S    E NK+  L+   ++     P    D P    S++R  E    N++A++ K K ++   + D QFC  P  P ++ TG+++  G
Sbjct:   74 EYMNLDTLRDRVNDAVNTIIRRDESTETGELLPPCVEAALNLGCIPVRASRSQRHSHPRTYLNLRPQEPAPLPPKIVDKTIEDQCPRFSPHHSGNQFNFSRSFKNANSTTLVPESSCQVIGNDNLAAPSSYPSSYENIPSRHSKMMRVDANVQL---KLGSVYPLYYGTRFQTEDTKLGSGISENVNSTTIFVGKPIGTSIPEPGEMGALPRLYSCSGSDTASKPTTKPDFLELQRRPHVTGCDLSLRLGLSGDPCMSLDRSSARETEDVGSIRSQEGNKLKDLSSERNKEFCFFPEKTADKPHESCSSKRFPEHECRNLEASIRKPKALFSDNLEDVQFCWQPGPPSNQFTGQIRGPG 429          

HSP 2 Score: 132.494 bits (332), Expect = 2.102e-29
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFFTFWPL 888
            MPRPGPRPY C RRAWHS+RHQPMRGS I++IFRV +E HS+ TKKNKEWQEKLPIVVLKAE+I+YSKANSE  +     L
Sbjct:    1 MPRPGPRPYECVRRAWHSERHQPMRGSTIQQIFRVADEFHSTQTKKNKEWQEKLPIVVLKAEEILYSKANSEDEYMNLDTL 81          
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Match: V4UDK2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008357mg PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.991e-37
Identity = 118/359 (32.87%), Postives = 169/359 (47.08%), Query Frame = 3
Query: 1113 EYMDIKTLWDRTNDAINTIIRGDESTETGELLQPCIEAALNLGCTARRTLRSQRNCSPRSYLNQKAEGTT-------------QGNLITNSHCMASYSSFLKHTTMNMTDMGSEAQKHIAQNSNRGT-DKFPFASNTSP--------LASNVEKHPPNTYSVYPLFYGNHLKVEEQRHGYGISPKSFSNKI-----------EPAMMGVIHSLFS-PDVDSSNK-MNQTDVRNTSNNPHEIPCDLSLRLGPLSTPCLSAGNSRHKEIKNTDSTF-LEWNKISYLTPPIDESLSSLPRSNRDAPLNPYSNERNLEGGHMNVDATLSKRKTIYGSPV-DQQFCLSPKLPCSELTGRMKRVG 2078
            EYM++ TL DR NDA+NTIIR DESTETGELL PC+EAALNLGC   R  RSQR+  PR+YLN + +                Q    +  H    ++        N T +  E+   +  N N      +P +    P        + +NV+       SVYPL+YG   + E+ + G GIS    S  I           EP  MG +  L+S    D+++K   + D       PH   CDLSLRLG    PC+S   S  +E ++  S    E NK+  L+   ++     P    D P    S++R  E    N++A++ K K ++   + D QFC  P  P ++ TG+++  G
Sbjct:   74 EYMNLDTLRDRVNDAVNTIIRRDESTETGELLPPCVEAALNLGCIPVRASRSQRHSHPRTYLNLRPQEPAPLPPKIVDKTIEDQCPRFSPHHSGNQFNFSRSFKNANSTTLVPESSCQVIGNDNLAAPSSYPSSYENIPSRHSKMMRVDANVQL---KLGSVYPLYYGTRFQTEDTKLGSGISENVNSTTIFVGKPIGTSIPEPGEMGALPRLYSCSGSDTASKPTTKPDFLELQRRPHVTGCDLSLRLGLSGDPCMSLDRSSARETEDVGSIRSQEGNKLKDLSSERNKEFCFFPEKTADKPHESCSSKRFPEHECRNLEASIRKPKALFSDNLEDVQFCWQPGPPSNQFTGQIRGPG 429          

HSP 2 Score: 132.494 bits (332), Expect = 2.102e-29
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  646 MPRPGPRPYVCERRAWHSDRHQPMRGSLIREIFRVVNEIHSSATKKNKEWQEKLPIVVLKAEKIMYSKANSEVNFFTFWPL 888
            MPRPGPRPY C RRAWHS+RHQPMRGS I++IFRV +E HS+ TKKNKEWQEKLPIVVLKAE+I+YSKANSE  +     L
Sbjct:    1 MPRPGPRPYECVRRAWHSERHQPMRGSTIQQIFRVADEFHSTQTKKNKEWQEKLPIVVLKAEEILYSKANSEDEYMNLDTL 81          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0093631 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067KEL4_JATCU2.998e-4335.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A061GPP2_THECC1.268e-3933.72Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
F6HHA0_VITVI1.253e-3842.29Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067GXP3_CITSI2.991e-3732.87Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4UDK2_9ROSI2.991e-3732.87Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35300:SF1SUBFAMILY NOT NAMEDcoord: 1..317
NoneNo IPR availablePANTHERPTHR35300FAMILY NOT NAMEDcoord: 1..317

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0093631 ID=g.barbadense_cottongen_reftransV1_0093631; Name=g.barbadense_cottongen_reftransV1_0093631; organism=Gossypium barbadense; type=contig; length=2607bp
GGGCGTGTGAATTGTGATGGAAATTTTGCCAGACTGTTGATAGGCAAATG
TTTACAGAGGGAGGACAAAGGGTGCAAGAGGTTGGGGTTACATAGATATA
TGCCACCGACAGTGACAATGTTTATCAATTCTACTACCCCCCTACCACTA
CCATTGTATTTGTATGTCTGGTCAGGACAAGCAGATACAGTAAAAAGGAG
CCAAAAAAAAAAACAATTAGAAAGCAATTTATAAAAAAAAAAATGGAAGA
AAGAAAGAAAGAGAGAGAGACTCTTGGGGCTGGGGGAAGCAGGCATGTGG
ATGAGTGGGGGACACACCAAGACTCATCAATTAAACCCTCCTTGAAATGA
TTGAGTTTGTGACAGAAGGGAGAAAAAAAAGAAAATAAAAAAAAAGGAAG
CCCTCTCCCAGTCTCTTTTATTTCTCTCTCTTTCTTTCACTGCTGTTGTT
TTTGGTTGCTACAGTACTGCATTTTGCTTTGGGGGTCAGTGAATGAAAAA
GGAAAACCAAAAAGCATGAGCTTCAGTTGAGCAACCAACAAGTTTTTCTA
TACAGCCCGACTTGGCAAAGCCTTTGTTTTACTTCTCTTCGAAGAAGCCA
AGGGTTTCTTTTTTATTCTTCTTTCTCTCTTCTTCATCATTGAAGATGCC
TAGACCTGGTCCAAGACCTTATGTCTGTGAGAGAAGAGCTTGGCACAGTG
ATAGACACCAACCCATGAGGGGTTCTCTCATTCGGGAAATTTTCAGAGTT
GTAAATGAGATTCATAGCTCAGCAACAAAGAAGAACAAGGAATGGCAAGA
GAAGCTCCCTATTGTTGTCTTAAAAGCAGAAAAAATTATGTATTCCAAAG
CCAATTCTGAGGTAAATTTTTTCACCTTTTGGCCACTGTTTATATCCTCC
TATGCTCTGCTATGTTAAGTTTTAAATGAAAAGTACAAGCCTTGATCATG
ATATTTTCTGTTGTTTTGCTAATTGATGAGTTAAAACGTTCATAATACGT
CACCTTCAAGTTAGCTGTATATTTAGGAAGCCAACCAAACATGTCATATT
ACTAGTTTTCTTTAGGGGAGGGGATGAGATTGGTTTTGTTTATCTGTCTT
ATTGCATAGGCTGAGTACATGGACATTAAAACCCTCTGGGATCGAACAAA
TGATGCCATTAACACAATCATTAGAGGTGATGAGAGTACTGAAACTGGAG
AGCTTCTTCAACCTTGTATTGAAGCTGCTCTTAATTTGGGCTGCACTGCG
AGAAGGACTTTGCGGAGCCAACGGAATTGTAGTCCAAGGTCTTATCTTAA
CCAAAAAGCAGAGGGCACTACTCAAGGAAATCTCATAACTAATTCACATT
GCATGGCTAGTTATTCCAGCTTCCTAAAACACACAACCATGAACATGACG
GATATGGGCTCTGAAGCTCAGAAACACATTGCTCAGAACAGTAACCGTGG
CACTGACAAGTTTCCTTTTGCATCAAACACTAGTCCTCTTGCTAGTAATG
TAGAGAAGCATCCTCCAAATACCTATTCAGTTTATCCTCTTTTCTATGGA
AACCACCTTAAAGTTGAAGAACAGCGGCATGGTTATGGAATCTCACCAAA
GTCATTTTCTAACAAAATAGAGCCTGCCATGATGGGTGTCATTCATAGTC
TCTTCTCTCCTGATGTGGACTCCTCAAATAAGATGAACCAAACAGATGTT
AGAAATACTTCTAACAACCCACATGAAATTCCCTGTGACCTATCACTGCG
GCTGGGCCCTCTCTCAACTCCTTGCCTGAGTGCTGGAAACAGTAGGCACA
AGGAAATTAAAAACACCGATTCCACCTTTCTAGAGTGGAACAAGATCAGT
TATCTGACACCCCCAATTGATGAAAGTTTATCTTCCTTACCCAGGAGCAA
CAGAGATGCCCCCTTGAACCCGTATTCAAATGAACGGAATCTTGAAGGTG
GACATATGAATGTAGATGCAACATTGAGCAAGCGAAAGACAATTTATGGT
TCACCAGTCGATCAGCAATTTTGTTTGTCACCAAAGCTTCCTTGCAGCGA
ATTAACTGGAAGAATGAAGCGTGTAGGATCCTAGAGCGTCCTTTAGACCA
TTGACATTGTCTTGGTGAGTATGATCTGCTGAAGCTCTTTCCCCTTTTAT
TTTCGCCATCTTTTTGTAGTTGAAGTTATATGTTAATGAGCAGTGTGTTA
AAATGTTGCAAGAATGTAAGTTGCAATATTGAATGAGTTGAGTTAAATGA
GGGAATCACCAACAAACTGACCGACAAGACTCTTGAAACTGCAACGTACA
AAGAATGTTGTCTTCCATGTTGCTGCTTGTAGAAATATAACCCTATGATG
TTCACTTTTGATGTATCTTTCCATCTGTCTGCTCCATGATATATACGGCA
AAATCACACCCTTGAAAACAGTTAACTGGAAAAAGCTTAAGAATATTTGT
GTAATCAATTCTGCTTAGTTGTGGTTGTGACACGTCGACTTTAATATTAT
CCTGGAGGAAAAGTGGCTCTTTTTCTCTAAACACCAGTTCTTAAACTTAT
CTATTAGCAGAAGCAAAATCTTATCAGTGGCCAACATGCCTGATTTTATT
TGATTTA
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