g.barbadense_cottongen_reftransV1_0093436, g.barbadense_cottongen_reftransV1_0093436 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy Swiss-Prot
Match: Y249_METTH (Uncharacterized protein MTH_249 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_249 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.037e-16 Identity = 54/186 (29.03%), Postives = 93/186 (50.00%), Query Frame = -2 Query: 1421 IHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMA--------------DDGGGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1936 + L++M++++ S VF+ G GR L+ KA MRL HLG H V D+TTP I +D L+A +G G TV +RS G V+ +TA PE+ + +++VV + ++T DD L PMG+++E + + + ++ + +LG+ + ++ RH +E Sbjct: 25 VDEAELEMMISKIMDASS----VFIVGTGRSELIGKAFAMRLMHLGFKVHVVGDVTTPAIRDEDCLIAISGSGETKTVTLAAETSRSVGATVVAVTATPES-TLTGYSDVVICIPSKTKEPWKYYTSGVLRGEYDD--------LTPMGTLFEDSTHLFLDGLIAEFMSILGKREKDLKERHAIIE 197
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy Swiss-Prot
Match: Y1940_AERPE (Uncharacterized protein APE_1940.1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1940.1 PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.062e-15 Identity = 57/200 (28.50%), Postives = 93/200 (46.50%), Query Frame = -2 Query: 1421 SMASLASQICNDIASIFSKPSIHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGGEKSRTLL-------PMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1999 +M+ +A I N I I +D V EL +K +V + G GR GL+ KA MRL HLG +++ + + P + DL+VA +G G + A+ G V +T P++ R +++V V +T + +R +L P+G+++E V + V+Y L LG E +R H N+E Sbjct: 19 TMSEIALFIINSINEI------DVGQVDRFVGELERVYREKRKVLVMGAGRSGLVGKAFAMRLLHLGFNSYVLGETIVPSVREGDLVVAISGSGRTKVIVTAAETAKQVGATVAAITTYPDSPLG-RLSDIVVRVPGRTKSSKMDDYFARQILGIHEPLAPLGTLFEDTTMVFLDGVIYSLMTRLGIDEEYMRNMHANVE 211
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy Swiss-Prot
Match: PHI_METAM (3-hexulose-6-phosphate isomerase OS=Methylomonas aminofaciens GN=rmpB PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 5.349e-13 Identity = 46/161 (28.57%), Postives = 82/161 (50.93%), Query Frame = -2 Query: 1421 ELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1903 ++ S V GR F+ G GR L+ + MRL H G V ++ TP I + DL + +G G T+ + A+S G ++++++ + ++ + A++V V D +K+ +PMG+++E + E + KL + G + E +RA H NLE Sbjct: 26 KILSLVDAAGRTFIGGAGRSLLVSRFFAMRLVHAGYQVSMVGEVVTPSIQAGDLFIVISGSGSTETLMPLVKKAKSQGAKIIVISMKAQSPMA-ELADLVVPVGGN---DANAFDKTHG-MPMGTIFELSTLWFLEATIAKLVDQKGLTEEGMRAIHANLE 181
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy Swiss-Prot
Match: Y1796_ARCFU (Uncharacterized protein AF_1796 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1796 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.462e-12 Identity = 47/163 (28.83%), Postives = 84/163 (51.53%), Query Frame = -2 Query: 1421 VAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1909 V E+ + +F+ G GR G + KA MRL HLG + + V + TP IT +D+LVA +G G ++V I A+ G +++ +T + ++ S + A+VV V + + E L P+G+++E + + +V ++ + + + ARH LE Sbjct: 24 VGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVAISGSGETTSVVNISKKAKDIGSKLVAVTGKRDS-SLAKMADVVMVVKGKMKQER--DEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLE 183
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy Swiss-Prot
Match: PHI_METJA (3-hexulose-6-phosphate isomerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=phi PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.110e-10 Identity = 42/159 (26.42%), Postives = 75/159 (47.17%), Query Frame = -2 Query: 1424 LASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNL 1900 L + + ++F++GVGR G + + MRL HLG ++FV + TTP DLL+ +G G +V + A++ ++ + E G+ V A++ + K LPMG+ +E + ++V+ ++ + L I RH NL Sbjct: 33 LIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVC--ECGNVVEFADLTIPLEV----------KKSKYLPMGTTFEETALIFLDLVIAEIMKRLNLDESEIIKRHCNL 179
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy TrEMBL
Match: K4BF72_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g025990.1 PE=4 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 9.916e-87 Identity = 139/193 (72.02%), Postives = 163/193 (84.46%), Query Frame = -2 Query: 1421 ASLASQICNDIASIFSKPSIHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADD--GGGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1993 A LAS+IC+ I+S+FS S +P ALD++V E+A ++ GRVF+YGVGREGLMLKAL MRL HLGLS+H VFDM TPPI DLL+ASAGPGGFSTVDAI VA+S G RVLLLTAQP +GSS+++A+VVAY+ AQTMADD G GEK R LLPMGSVYEGAMFVLFEMVV+KLGE+L +SPEA+RARHTNLE Sbjct: 11 ALLASKICDQISSVFSTNSPNPAALDVLVQEIADAANRNGRVFVYGVGREGLMLKALSMRLFHLGLSSHCVFDMNTPPIGPSDLLIASAGPGGFSTVDAISGVAKSSGARVLLLTAQPHSGSSMKYASVVAYIPAQTMADDDAGDGEKERPLLPMGSVYEGAMFVLFEMVVFKLGEILKQSPEAVRARHTNLE 203
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy TrEMBL
Match: A0A078H708_BRANA (BnaC03g15610D protein OS=Brassica napus GN=BnaC03g15610D PE=4 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 1.014e-86 Identity = 143/196 (72.96%), Postives = 162/196 (82.65%), Query Frame = -2 Query: 1421 MASLASQICNDIASIFSKPS-IHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGG--EK-SRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1996 M+ L+SQICN I+S+FS P+ HPP LDL+V ELA + RVFL+GVGREGLMLKA MRL HLGLS+H V DMTTPPI+S DLL+ASAGPGGFSTVDAICSVA++ G +V+L+TAQPETGS V+HA V YV AQTMA DGGG EK R LLPMGSVYEGA+FVLFEMVVYKLGEVLGESPE+ R RHTNLE Sbjct: 9 MSRLSSQICNQISSVFSNPTDPHPPPLDLLVTELAGVSRRGARVFLHGVGREGLMLKAFAMRLFHLGLSSHLVSDMTTPPISSPDLLIASAGPGGFSTVDAICSVAKAAGAKVVLITAQPETGSCVKHATDVCYVPAQTMASDGGGATEKGERPLLPMGSVYEGALFVLFEMVVYKLGEVLGESPESKRCRHTNLE 204
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy TrEMBL
Match: A0A0D3B3V2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 5.320e-86 Identity = 142/196 (72.45%), Postives = 161/196 (82.14%), Query Frame = -2 Query: 1421 MASLASQICNDIASIFSKPS-IHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGG--EK-SRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1996 M+ L+SQICN I+S+FS P+ HPP LDL+V ELA + RVFL+GVGREGLMLKA MRL HLGLS+H V DMTTPPI+S D L+ASAGPGGFSTVDAICSVA++ G +V+L+TAQPETGS V+HA V YV AQTMA DG G EK R LLPMGSVYEGA+FVLFEMVVYKLGEVLGESPE+IR RHTNLE Sbjct: 9 MSRLSSQICNQISSVFSNPTDPHPPPLDLLVTELAGVSRRGARVFLHGVGREGLMLKAFAMRLFHLGLSSHLVSDMTTPPISSPDFLIASAGPGGFSTVDAICSVAKAAGAKVVLITAQPETGSCVKHATDVCYVPAQTMASDGEGATEKGERPLLPMGSVYEGALFVLFEMVVYKLGEVLGESPESIRCRHTNLE 204
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy TrEMBL
Match: A0A068URB4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_48 OS=Coffea canephora GN=GSCOC_T00031754001 PE=4 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 9.352e-86 Identity = 138/195 (70.77%), Postives = 166/195 (85.13%), Query Frame = -2 Query: 1421 MASLASQICNDIASIFSKPSIHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSS-VRHANVVAYVAAQTMADD--GGGEKSRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1996 +++LASQICN I+S+F++P P AL+++V E+A+T G++F+YGVGREGLMLKALCMRL HLGLSAH VFDMTTPPI S DLL+ASAGPGGFSTVDAIC VARS+G RV+LLTAQPE+ SS V+HA+VVA++ AQTMADD KS+ LLPMGS+YEGAMFVLFEMVV+KL EVLG+S E IRARHTNL+ Sbjct: 7 VSTLASQICNQISSVFNQPISGPTALEVIVEEVAATAKGNGQIFVYGVGREGLMLKALCMRLFHLGLSAHCVFDMTTPPIASPDLLIASAGPGGFSTVDAICEVARSNGARVVLLTAQPESKSSCVKHASVVAHIPAQTMADDEVAADPKSKPLLPMGSLYEGAMFVLFEMVVFKLAEVLGQSSEVIRARHTNLD 201
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy TrEMBL
Match: A0A087GAC7_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G299200 PE=4 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 9.375e-86 Identity = 139/194 (71.65%), Postives = 156/194 (80.41%), Query Frame = -2 Query: 1421 MASLASQICNDIASIFSKPS-IHPPALDLMVAELASTVSQKGRVFLYGVGREGLMLKALCMRLAHLGLSAHFVFDMTTPPITSKDLLVASAGPGGFSTVDAICSVARSHGGRVLLLTAQPETGSSVRHANVVAYVAAQTMADDGGGEK-SRTLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPEAIRARHTNLE 1996 M L+SQICN I ++F+ P+ HPP LD++V ELA + VFL+GVGREGLMLKA MRL HLGLS H V DMTTPPI+ DLL+ASAGPGGFSTVDAICSVA+S G RVLLLTAQPE+GS V+HA V YV AQTMA D EK R LLPMGSVYEGAMFVLFEMVVYKLGEVLGESPE++R+RHTNLE Sbjct: 9 MEKLSSQICNQICAVFANPTNPHPPPLDILVTELAGVSRRSSCVFLHGVGREGLMLKAFAMRLFHLGLSTHLVSDMTTPPISPSDLLIASAGPGGFSTVDAICSVAKSSGARVLLLTAQPESGSCVKHATAVCYVPAQTMASDEAEEKGERRLLPMGSVYEGAMFVLFEMVVYKLGEVLGESPESVRSRHTNLE 202 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 15
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BLAST of g.barbadense_cottongen_reftransV1_0093436 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093436 ID=g.barbadense_cottongen_reftransV1_0093436; Name=g.barbadense_cottongen_reftransV1_0093436; organism=Gossypium barbadense; type=contig; length=2132bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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