g.barbadense_cottongen_reftransV1_0093379, g.barbadense_cottongen_reftransV1_0093379 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy Swiss-Prot
Match: DCNL2_HUMAN (DCN1-like protein 2 OS=Homo sapiens GN=DCUN1D2 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 4.634e-7 Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = -1 Query: 771 EGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRF 1187 +GI+ C DL +D + +L++AWK +A Q F++ E+ G+ LG DS+ KLK L LE+E++ + ++DFY + F + QK +D+E LVL +F+ L +++ + I D W L F Sbjct: 84 DGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEFLDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFA-KNPGQKGLDLEMAVAYWKLVLSGRFK--FLDLWNTFLMEHHKRSIPRDTWNLLLDF 219
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy Swiss-Prot
Match: DCN1_CAEEL (Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans GN=dcn-1 PE=1 SV=2) HSP 1 Score: 56.225 bits (134), Expect = 6.165e-7 Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = -1 Query: 897 SPEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEK-PSNYEDFYTYAFRYCLTEEKQKSVDIES-IC 1193 P GI L +DLG + TD R+L+LAWK A+ Q F+ DEW G+ AL D++ L++ + + +E + + + Y +AF Y + +++D+E+ IC Sbjct: 85 GPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYAKSAAC-RNLDLETAIC 184
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0D2RUI0_GOSRA (Defective in cullin neddylation protein OS=Gossypium raimondii GN=B456_009G053700 PE=4 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 1.707e-109 Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = -1 Query: 636 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEMYKFANFIFPFAAITQYHKVSFHLHWKSVLAARMKKN 1190 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEM+KFANFIFPFAAITQYHKVSFHLHWKSVLAARMKKN Sbjct: 55 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEMHKFANFIFPFAAITQYHKVSFHLHWKSVLAARMKKN 239
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0B0ME22_GOSAR (Defective in cullin neddylation protein OS=Gossypium arboreum GN=F383_15731 PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 2.767e-77 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = -1 Query: 759 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEV 1190 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEV Sbjct: 55 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEV 198
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0D2RUH3_GOSRA (Defective in cullin neddylation protein OS=Gossypium raimondii GN=B456_009G053700 PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 3.689e-77 Identity = 143/152 (94.08%), Postives = 148/152 (97.37%), Query Frame = -1 Query: 735 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEMYKF 1190 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKE++ ++ + Sbjct: 55 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEISFPDLENY 206 HSP 2 Score: 73.9442 bits (180), Expect = 4.358e-11 Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = -1 Query: 369 NFESLLEQISFPDLENYDAIQAWPLILDNYVEWMREKHS 485 NF ++ISFPDLENYDA QAWPLILDNYVEWMREKHS Sbjct: 190 NFLRFCKEISFPDLENYDATQAWPLILDNYVEWMREKHS 228
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0D2R5X8_GOSRA (Defective in cullin neddylation protein OS=Gossypium raimondii GN=B456_010G111400 PE=4 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 2.774e-70 Identity = 129/157 (82.17%), Postives = 144/157 (91.72%), Query Frame = -1 Query: 720 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEMYKFANFIF 1190 P+GIEALCSDLGVDYTDVRILMLAWKLKA KQGYFTQDEW+TG+KALGVDSLSKLKKAL +LE EV KP+NYEDFYTYAFRYCLTEEKQKS+DI+SICELLNLVLG QFRP++D L+EYLKVQ+DYKVIN DQWINFLRFC+EV+L E F ++F Sbjct: 55 PDGIEALCSDLGVDYTDVRILMLAWKLKAGKQGYFTQDEWRTGMKALGVDSLSKLKKALCELEIEVGKPTNYEDFYTYAFRYCLTEEKQKSLDIDSICELLNLVLGAQFRPKVDVLVEYLKVQSDYKVINLDQWINFLRFCQEVSLFEKKMFILYLF 211
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0B0PD05_GOSAR (Defective in cullin neddylation protein OS=Gossypium arboreum GN=F383_02662 PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.869e-68 Identity = 125/152 (82.24%), Postives = 141/152 (92.76%), Query Frame = -1 Query: 735 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEMYKF 1190 P+GIEALCSDLGVDYTDVRILMLAWKLKA KQGYFTQDEW+TG+KALGVDSLSKLKKAL +LE EV KP+NYEDFYTYAFRYCLTEEKQKS+DI+SICELLNLVLG QFRPQ+D L+EYLKVQ+DYKVIN DQWINFLRFC+E++ ++ + Sbjct: 55 PDGIEALCSDLGVDYTDVRILMLAWKLKAGKQGYFTQDEWRTGMKALGVDSLSKLKKALCELEIEVGKPTNYEDFYTYAFRYCLTEEKQKSLDIDSICELLNLVLGAQFRPQVDVLVEYLKVQSDYKVINLDQWINFLRFCQEISFPDLGNY 206 HSP 2 Score: 65.0846 bits (157), Expect = 2.821e-8 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = -1 Query: 369 NFESLLEQISFPDLENYDAIQAWPLILDNYVEWMREKHS 485 NF ++ISFPDL NYD+ AWPLILDN+VEWMR+KHS Sbjct: 190 NFLRFCQEISFPDLGNYDSALAWPLILDNFVEWMRQKHS 228
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0D2V8L7_GOSRA (Defective in cullin neddylation protein OS=Gossypium raimondii GN=B456_010G111400 PE=4 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 7.013e-68 Identity = 124/152 (81.58%), Postives = 141/152 (92.76%), Query Frame = -1 Query: 735 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEMYKF 1190 P+GIEALCSDLGVDYTDVRILMLAWKLKA KQGYFTQDEW+TG+KALGVDSLSKLKKAL +LE EV KP+NYEDFYTYAFRYCLTEEKQKS+DI+SICELLNLVLG QFRP++D L+EYLKVQ+DYKVIN DQWINFLRFC+E++ ++ + Sbjct: 55 PDGIEALCSDLGVDYTDVRILMLAWKLKAGKQGYFTQDEWRTGMKALGVDSLSKLKKALCELEIEVGKPTNYEDFYTYAFRYCLTEEKQKSLDIDSICELLNLVLGAQFRPKVDVLVEYLKVQSDYKVINLDQWINFLRFCQEISFPDLGNY 206 HSP 2 Score: 63.5438 bits (153), Expect = 8.188e-8 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = -1 Query: 369 NFESLLEQISFPDLENYDAIQAWPLILDNYVEWMREKHS 485 NF ++ISFPDL NYD+ AWPLILDN+VEWMR+KH Sbjct: 190 NFLRFCQEISFPDLGNYDSALAWPLILDNFVEWMRQKHG 228
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A061GJB0_THECC (Defective in cullin neddylation protein (Fragment) OS=Theobroma cacao GN=TCM_037113 PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.877e-65 Identity = 122/149 (81.88%), Postives = 137/149 (91.95%), Query Frame = -1 Query: 744 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEM 1190 P+GIEA CSDLGVD TDVRILMLAWKLKA++QGYFTQDEW+TGLK L VDS+SKLKKAL +LEKEV KPSNY++FY+YAFRYCLTEE QKSVDIESICELLNLVLG QFRPQ+D LIEYLKVQ+DYKVIN DQWINFLRFC+E+N ++ Sbjct: 33 PDGIEAFCSDLGVDCTDVRILMLAWKLKAQRQGYFTQDEWRTGLKELRVDSISKLKKALPELEKEVGKPSNYDNFYSYAFRYCLTEEMQKSVDIESICELLNLVLGAQFRPQVDLLIEYLKVQSDYKVINLDQWINFLRFCQEINFPDL 181
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A061GIC4_THECC (Defective in cullin neddylation protein OS=Theobroma cacao GN=TCM_037113 PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.324e-64 Identity = 122/149 (81.88%), Postives = 137/149 (91.95%), Query Frame = -1 Query: 744 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVNLLEM 1190 P+GIEA CSDLGVD TDVRILMLAWKLKA++QGYFTQDEW+TGLK L VDS+SKLKKAL +LEKEV KPSNY++FY+YAFRYCLTEE QKSVDIESICELLNLVLG QFRPQ+D LIEYLKVQ+DYKVIN DQWINFLRFC+E+N ++ Sbjct: 55 PDGIEAFCSDLGVDCTDVRILMLAWKLKAQRQGYFTQDEWRTGLKELRVDSISKLKKALPELEKEVGKPSNYDNFYSYAFRYCLTEEMQKSVDIESICELLNLVLGAQFRPQVDLLIEYLKVQSDYKVINLDQWINFLRFCQEINFPDL 203 HSP 2 Score: 69.707 bits (169), Expect = 9.240e-10 Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = -1 Query: 369 NFESLLEQISFPDLENYDAIQAWPLILDNYVEWMREKHS 485 NF ++I+FPDLENYDA QAWPLILDN+V+WMREKHS Sbjct: 190 NFLRFCQEINFPDLENYDATQAWPLILDNFVDWMREKHS 228
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A067L3H3_JATCU (Defective in cullin neddylation protein OS=Jatropha curcas GN=JCGZ_03992 PE=4 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 2.697e-62 Identity = 117/145 (80.69%), Postives = 135/145 (93.10%), Query Frame = -1 Query: 756 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDYKVINSDQWINFLRFCKEVN 1190 PEGIEALCSDL V++TDVRILMLAWK+KA+KQGYFTQ+EW+TGLKAL D+L+KLKKAL +LEKEV P N+EDFY+YAFRYCLTEEKQKSVDIESICELL+LVLG QFR +IDSLIEYLK+Q+DYKVIN DQW+NFLRFCKE++ Sbjct: 53 PEGIEALCSDLKVEHTDVRILMLAWKMKAQKQGYFTQEEWRTGLKALRSDTLNKLKKALPELEKEVGTPGNFEDFYSYAFRYCLTEEKQKSVDIESICELLDLVLGSQFRSKIDSLIEYLKIQSDYKVINLDQWMNFLRFCKEIS 197 HSP 2 Score: 63.1586 bits (152), Expect = 1.285e-7 Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = -1 Query: 372 NFESLLEQISFPDLENYDAIQAWPLILDNYVEWMREKH 485 NF ++ISFPD ENYDA QAWPLILDN+V+WM+EK Sbjct: 188 NFLRFCKEISFPDFENYDATQAWPLILDNFVDWMKEKE 225
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Match: A0A0D2TJV7_GOSRA (Defective in cullin neddylation protein OS=Gossypium raimondii GN=B456_009G053700 PE=4 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 2.756e-61 Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -1 Query: 813 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVXXXXXXXXXXXXXXXEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVQNDY 1190 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKV + + Sbjct: 55 PEGIEALCSDLGVDYTDVRILMLAWKLKAEKQGYFTQDEWQTGLKALGVDSLSKLKKALSDLEKEVEKPSNYEDFYTYAFRYCLTEEKQKSVDIESICELLNLVLGVQFRPQIDSLIEYLKVGSQF 180 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 22
Pages
BLAST of g.barbadense_cottongen_reftransV1_0093379 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093379 ID=g.barbadense_cottongen_reftransV1_0093379; Name=g.barbadense_cottongen_reftransV1_0093379; organism=Gossypium barbadense; type=contig; length=2972bpback to top |