g.barbadense_cottongen_reftransV1_0093370, g.barbadense_cottongen_reftransV1_0093370 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NLR3_GOSAR (HemA OS=Gossypium arboreum GN=F383_17699 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 7.799e-24 Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = -1 Query: 256 ETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDT-GWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSF 717 +TL+ FS+E L S DQ S L + +L +QLYDENN +V D++GL+ ALK T P YL+P+A +IEKA GE T H LLVCAA+ EM+E ++ W+ LKKW ATLN A++ GF V FAD LL AY F Sbjct: 327 KTLIEKFSSEFPWLFSQ-DQVQE---SLSTLGAQFKSLENQLYDENNNKVSFKDFEGLEEALKKTNALDLLPGYLKPIANQIEKAHGEATGIAHAYIQLLVCAAINEMQESAVKSLNWETLKKWGATLNYARQLGFQVSFADELLRKTFGAYVCF 477 HSP 2 Score: 65.0846 bits (157), Expect = 1.499e-7 Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = -1 Query: 358 GGFVSFEVLRSNLCNLISQLYDENNKEVGISD-----YDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDML 651 G +V F+ L I+Q D+NN +V D Y L+ AL+ T PDYL+P+A +I++ RGE T H L VCAA++EM++ L WD L Sbjct: 472 GAYVCFKFL-------INQPDDKNNNQVSDKDLESQVYGRLEEALEKTNAFGLPDYLKPIANQIKEVRGEATGIAHACIQLFVCAAIREMQDSALGSLNWDTL 567 HSP 3 Score: 63.1586 bits (152), Expect = 5.138e-7 Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = -3 Query: 1469 QFGRACRE-KSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSM----VCVHFRSVFLLHWTKSLFHQSYSDLA 1945 QF C + +SV K +K+LKDRI R+ K D+E ++ + + A S +P + QI+ +WP+R D+Q QK+Q IK+ K+ VLTE + EL V ++++ L +R K+ +L+A+ M + F S F +++ +S S L Sbjct: 196 QFPEVCSDSRSVRKRMKILKDRIHRQKMADKRTDLELLLWMKLKLKAFPVSLQIP---ASFNQIRNEWPMRPDLQIILQKMQDIKAKSKDLVLTENDMNGELGIVIQELDTLRARRSKE--QERDLDAVLDTDMGTKTLIEKFSSEFPWLFSQDQVQESLSTLG 354
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0MRJ1_GOSAR (60S ribosomal L24 OS=Gossypium arboreum GN=F383_24049 PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.008e-21 Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = -1 Query: 259 EVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSL-LLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFS 633 E ++S +L ++LYD+ N +V D+ GL+LALK+T P+YL+ +A EK RG+ T + +++++ LVCAA+KEM++ ++ WD LKKW ATLN A+K F V FADNLL L AYF+ Sbjct: 148 EGVQSKFHDLENKLYDKGNHKVKCKDFPGLELALKNTARWEIPEYLKSIAILTEKDRGKAT-EFYQINIQTLVCAAIKEMKDFSVGDLDWDTLKKWGATLNCAEKFDFQVRFADNLLKKHLLAYFA 272
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0PKI5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_30422 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.879e-20 Identity = 60/139 (43.17%), Postives = 92/139 (66.19%), Query Frame = -3 Query: 1538 KQFGRACREKSVEKI--VKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1948 +Q G +E+ + ++ VK KDRI+ ++K MA M+SVIL+ M+ AS LLP+VLG+ KQIK+Q PVRSD+ K+K+ I+ +K+ LT+ AK LL + E+ + LD++ +KD+T NL+AIF+ +MVC Sbjct: 104 QQRGAESKEEDLSELEMVKAFKDRINSQIKIDDMAYMKSVILIFHQMIEMKASPLLPKVLGSHKQIKSQCPVRSDLDDIKRKVLKIELEFKDTGLTD-EAKRRLLELEEEFKRLDQKWMKDMTKAGNLDAIFTNNMVCT 241
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0P6E8_GOSAR (LL-diaminopimelate aminotransferase OS=Gossypium arboreum GN=F383_00691 PE=4 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.588e-17 Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = -1 Query: 256 QFFSAFPWL-RESTEINSHVIPVDQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSF 813 +F AFPWL E++ N VDQ +L NG +G+G ++ +L +L +++N VG S++ GL+ A KD+ G PDYL+ + +IE RGEPT D ++ LL V AAVKEM ++ ++ +L KWAAT N+AK+ F V+F +N+L ++ AY F Sbjct: 416 EFSKAFPWLFGEASATNKAA--VDQFQVSL-------------QNG------KGSGD--------KDIEDLEKELLNKDNCNVGFSNFPGLKYA-KDSAEGNIPDYLKSIVNKIEDKRGEPTNDAYQNILLFVSAAVKEMGDVPVDELDKHILHKWAATYNLAKQMQFQVKFVENMLKKRIHAYLRF 572
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NG01_GOSAR (Putative C5orf65 OS=Gossypium arboreum GN=F383_19150 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.240e-13 Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -3 Query: 1538 TGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1954 + K +G A V+ +K +IDR+ K KM D+E + T + + + + ++ + KQIKTQWP+R D+Q+ QK+Q IK+ +K+ +L E +A EL V +++ LD+QR K+ T +L+A+FS + VC Sbjct: 77 SEKNYGEA-----VQNRLKNFHHQIDRRRKTDKMRDLEFL-----TWIKSKSFPVSLQIPASFKQIKTQWPMRPDLQSILQKIQDIKAKFKDHLLNEDDANEELDIVEDELNKLDQQRSKEQTR--DLDAVFSNTKVCT 203
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0PD37_GOSAR (Replication E1 OS=Gossypium arboreum GN=F383_31749 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.593e-8 Identity = 44/139 (31.65%), Postives = 79/139 (56.83%), Query Frame = -3 Query: 1538 TGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1954 + K +G A V+ +K +IDR+ K KM D+E + T + + + + ++ + KQIKTQ + D+Q+ QK+Q IK+ +K+ +L E +A EL V +++ LD+Q+ K+ T +L+A+FS + +C Sbjct: 75 SEKNYGEA-----VQNRLKNFHHQIDRRRKTDKMRDLEFL-----TWIKSKSFPVSLQIPASFKQIKTQLLMHPDLQSILQKIQDIKAKFKDHLLNEDDANEELDIVEDELNKLDQQQSKEQTR--DLDAVFSNTKICT 201
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0D2SG75_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G403100 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 6.653e-8 Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = -3 Query: 1559 REKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNA---KNELLAVGEKIE----GLDEQRLKDLTNTDNLNAIF 1927 ++KSV +++K+L+DR++R++KN + A M+S I ++ ++ S L + TL QI ++WP RSD+ K ++ ++ + NA K E L EKIE LDE+R+KD T L F Sbjct: 57 KKKSVPQVLKILRDRVNRRIKNDQFAGMKSYIWLLGFVIQYQISFLYQPIGQTLNQILSKWPARSDLDNIKMDIKAMEDDERLKAKQSTNADEMKMEALPGLEKIEKDIKKLDEERVKDSAKTAKLAETF 186 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 17
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093370 ID=g.barbadense_cottongen_reftransV1_0093370; Name=g.barbadense_cottongen_reftransV1_0093370; organism=Gossypium barbadense; type=contig; length=2517bpback to top |