g.barbadense_cottongen_reftransV1_0093370, g.barbadense_cottongen_reftransV1_0093370 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0093370
Unique Nameg.barbadense_cottongen_reftransV1_0093370
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2517
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NLR3_GOSAR (HemA OS=Gossypium arboreum GN=F383_17699 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.799e-24
Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  256 ETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDT-GWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSF 717
            +TL+  FS+E   L S  DQ      S   L +   +L +QLYDENN +V   D++GL+ ALK T      P YL+P+A +IEKA GE T   H    LLVCAA+ EM+E  ++   W+ LKKW ATLN A++ GF V FAD LL     AY  F
Sbjct:  327 KTLIEKFSSEFPWLFSQ-DQVQE---SLSTLGAQFKSLENQLYDENNNKVSFKDFEGLEEALKKTNALDLLPGYLKPIANQIEKAHGEATGIAHAYIQLLVCAAINEMQESAVKSLNWETLKKWGATLNYARQLGFQVSFADELLRKTFGAYVCF 477          

HSP 2 Score: 65.0846 bits (157), Expect = 1.499e-7
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = -1
Query:  358 GGFVSFEVLRSNLCNLISQLYDENNKEVGISD-----YDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDML 651
            G +V F+ L       I+Q  D+NN +V   D     Y  L+ AL+ T     PDYL+P+A +I++ RGE T   H    L VCAA++EM++  L    WD L
Sbjct:  472 GAYVCFKFL-------INQPDDKNNNQVSDKDLESQVYGRLEEALEKTNAFGLPDYLKPIANQIKEVRGEATGIAHACIQLFVCAAIREMQDSALGSLNWDTL 567          

HSP 3 Score: 63.1586 bits (152), Expect = 5.138e-7
Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = -3
Query: 1469 QFGRACRE-KSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSM----VCVHFRSVFLLHWTKSLFHQSYSDLA 1945
            QF   C + +SV K +K+LKDRI R+    K  D+E ++ +   + A   S  +P    +  QI+ +WP+R D+Q   QK+Q IK+  K+ VLTE +   EL  V ++++ L  +R K+     +L+A+    M    +   F S F   +++    +S S L 
Sbjct:  196 QFPEVCSDSRSVRKRMKILKDRIHRQKMADKRTDLELLLWMKLKLKAFPVSLQIP---ASFNQIRNEWPMRPDLQIILQKMQDIKAKSKDLVLTENDMNGELGIVIQELDTLRARRSKE--QERDLDAVLDTDMGTKTLIEKFSSEFPWLFSQDQVQESLSTLG 354          
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0MRJ1_GOSAR (60S ribosomal L24 OS=Gossypium arboreum GN=F383_24049 PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.008e-21
Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  259 EVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSL-LLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFS 633
            E ++S   +L ++LYD+ N +V   D+ GL+LALK+T     P+YL+ +A   EK RG+ T + +++++  LVCAA+KEM++ ++    WD LKKW ATLN A+K  F V FADNLL   L AYF+
Sbjct:  148 EGVQSKFHDLENKLYDKGNHKVKCKDFPGLELALKNTARWEIPEYLKSIAILTEKDRGKAT-EFYQINIQTLVCAAIKEMKDFSVGDLDWDTLKKWGATLNCAEKFDFQVRFADNLLKKHLLAYFA 272          
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0PKI5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_30422 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.879e-20
Identity = 60/139 (43.17%), Postives = 92/139 (66.19%), Query Frame = -3
Query: 1538 KQFGRACREKSVEKI--VKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1948
            +Q G   +E+ + ++  VK  KDRI+ ++K   MA M+SVIL+   M+   AS LLP+VLG+ KQIK+Q PVRSD+   K+K+  I+  +K+  LT+  AK  LL + E+ + LD++ +KD+T   NL+AIF+ +MVC 
Sbjct:  104 QQRGAESKEEDLSELEMVKAFKDRINSQIKIDDMAYMKSVILIFHQMIEMKASPLLPKVLGSHKQIKSQCPVRSDLDDIKRKVLKIELEFKDTGLTD-EAKRRLLELEEEFKRLDQKWMKDMTKAGNLDAIFTNNMVCT 241          
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0P6E8_GOSAR (LL-diaminopimelate aminotransferase OS=Gossypium arboreum GN=F383_00691 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.588e-17
Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = -1
Query:  256 QFFSAFPWL-RESTEINSHVIPVDQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSF 813
            +F  AFPWL  E++  N     VDQ   +L              NG      +G+G          ++ +L  +L +++N  VG S++ GL+ A KD+  G  PDYL+ +  +IE  RGEPT D ++  LL V AAVKEM ++ ++     +L KWAAT N+AK+  F V+F +N+L  ++ AY  F
Sbjct:  416 EFSKAFPWLFGEASATNKAA--VDQFQVSL-------------QNG------KGSGD--------KDIEDLEKELLNKDNCNVGFSNFPGLKYA-KDSAEGNIPDYLKSIVNKIEDKRGEPTNDAYQNILLFVSAAVKEMGDVPVDELDKHILHKWAATYNLAKQMQFQVKFVENMLKKRIHAYLRF 572          
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NG01_GOSAR (Putative C5orf65 OS=Gossypium arboreum GN=F383_19150 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.240e-13
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -3
Query: 1538 TGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1954
            + K +G A     V+  +K    +IDR+ K  KM D+E +     T + + +  +  ++  + KQIKTQWP+R D+Q+  QK+Q IK+ +K+ +L E +A  EL  V +++  LD+QR K+ T   +L+A+FS + VC 
Sbjct:   77 SEKNYGEA-----VQNRLKNFHHQIDRRRKTDKMRDLEFL-----TWIKSKSFPVSLQIPASFKQIKTQWPMRPDLQSILQKIQDIKAKFKDHLLNEDDANEELDIVEDELNKLDQQRSKEQTR--DLDAVFSNTKVCT 203          
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0PD37_GOSAR (Replication E1 OS=Gossypium arboreum GN=F383_31749 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.593e-8
Identity = 44/139 (31.65%), Postives = 79/139 (56.83%), Query Frame = -3
Query: 1538 TGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1954
            + K +G A     V+  +K    +IDR+ K  KM D+E +     T + + +  +  ++  + KQIKTQ  +  D+Q+  QK+Q IK+ +K+ +L E +A  EL  V +++  LD+Q+ K+ T   +L+A+FS + +C 
Sbjct:   75 SEKNYGEA-----VQNRLKNFHHQIDRRRKTDKMRDLEFL-----TWIKSKSFPVSLQIPASFKQIKTQLLMHPDLQSILQKIQDIKAKFKDHLLNEDDANEELDIVEDELNKLDQQQSKEQTR--DLDAVFSNTKICT 201          
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0D2SG75_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G403100 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.653e-8
Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = -3
Query: 1559 REKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNA---KNELLAVGEKIE----GLDEQRLKDLTNTDNLNAIF 1927
            ++KSV +++K+L+DR++R++KN + A M+S I ++  ++    S L   +  TL QI ++WP RSD+   K  ++ ++   +       NA   K E L   EKIE     LDE+R+KD   T  L   F
Sbjct:   57 KKKSVPQVLKILRDRVNRRIKNDQFAGMKSYIWLLGFVIQYQISFLYQPIGQTLNQILSKWPARSDLDNIKMDIKAMEDDERLKAKQSTNADEMKMEALPGLEKIEKDIKKLDEERVKDSAKTAKLAETF 186          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 17
Match NameE-valueIdentityDescription
A0A0B0NLR3_GOSAR7.799e-2445.16HemA OS=Gossypium arboreum GN=F383_17699 PE=4 SV=1[more]
A0A0B0MRJ1_GOSAR1.008e-2145.2460S ribosomal L24 OS=Gossypium arboreum GN=F383_24... [more]
A0A0B0PKI5_GOSAR2.879e-2043.17Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0P6E8_GOSAR4.588e-1735.29LL-diaminopimelate aminotransferase OS=Gossypium a... [more]
A0A0B0NG01_GOSAR1.240e-1335.25Putative C5orf65 OS=Gossypium arboreum GN=F383_191... [more]
A0A0B0PD37_GOSAR1.593e-831.65Replication E1 OS=Gossypium arboreum GN=F383_31749... [more]
A0A0D2SG75_GOSRA6.653e-833.85Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0093370 ID=g.barbadense_cottongen_reftransV1_0093370; Name=g.barbadense_cottongen_reftransV1_0093370; organism=Gossypium barbadense; type=contig; length=2517bp
TAAAAGTGAAATCAGCTATCAAACACCAAAGAAATTAAAATACACAAATA
TGTATCACCATTACAACCCTGATAAAAAAAAATAACACCAGCACAAAATA
CGTCAATAATTCAAACACCGGAATCATAGAGTTCATCTCCGACGGTAATT
GTAACAGAAACATACCCTTCCACTCACAACCAAAAGAGCTGAAACATTCT
GATTTCCTGTGAACTTTTTTCTTATTTGTCAGTCCCATTCAACATGTGTT
GGGAAAAAAGAAAAATAGGCAAATAGTTTCGTCAGCAACAGATTATCAGC
AAATTCCACTATAAAACCACTTTTCTTAGCCACGTTGAGGGTCGCTGCCC
ACTTCTTCAACATGTCCCACTTGCTATACTCAAGTGTCAACTCTTCCATC
TCCTTTACCGCGGCACAAACCAGAAGTAGACTAACCTTATGAATATCAGC
AGTAGGTTCCCCACGAGCCTTTTCAATCCGGGTTGCAACAGGTTCAAGGT
AATCCGGAGGTCTCCCCCAGCCAGTGTCCTTCAATGCTAGTTGTAACCCA
TCGTAATCTGAAATACCCACTTCTTTGTTGTTTTCATCATAAAGTTGACT
TATCAAGTTGCATAAATTAGACCGCAACACCTCGAAACTCACAAAACCTC
CGTTGCCTTGATCAACAGGACTAACAAGACCATTGGTTTCAGTACTAAAA
TTAGACAGTAACGTCTCCCTAGTCGGTAAATTTCTGTGGTCTTGATCAAC
AGGAATAACATGACTATTAATTTCAGTACTTTCTCTTAACCATGGAAATG
CTGAAAAAAACTGAAACAACAAATGTAGAAAACATGTTATAATTTCCTAT
TAATCATTAAATATATTACAAACAGATGATGGATGGATAGATGTGTGTGT
ATGTGTGTGTGTGTGCATGTGTGTGGTACCTTTGTTTTCAGAGTCTCCAC
GCTGAACTCCTGAAATTAAAGAGAAGGATAAACAAATCATCAAGATGGAG
AGATTTAAACATGGGCAAGTTGAAGAAACACTCGACACATTGAGATCTGA
TGCACTGCAGAAAACGGAGAGGCACGAGAGATATGGTCTGATCATATTAG
GGTTTCTAGTCTAATCGTAATGAAAATCTAAGTCCCATGTTTGATACGTA
TTCAAACACAGGTATGATGTACAATCCTTCAAAAGTATTCCTAATACATA
GAAAGCCTTGTGCAAAAAGTGAACATAGCTGATACAGACGATTGAATCTG
AGCAATGTTCTAAGAACCAGACTGGTTCTCAGCTCAACCACTTCAACAAT
AATTAAATAGAAATAAAAAAATCCATAGCCGGTTGAATCATCACTTCTCT
TTATTCCAATTTCAGGTTTTTTACATGTACATAGCTCTTTACTCTATTTC
CGATTATACACCACCGATCGGACCATCAGTTCCCACTTCAACTGGCAAGT
CCAATTTGGTTTTGACAATGCTAAATCTGAGTAAGATTGATGAAAAAGAC
TTTTTGTCCAGTGCAAGAGGAAGACACTACGAAAATGTACACATACCATA
CTTCCGGAGAAGATTGCGTTAAGGTTGTCTGTATTGGTTAAGTCCTTTAG
CCGTTGTTCATCTAAACCTTCAATTTTCTCTCCTACAGCAAGTAATTCAT
TCTTCGCGTTTCCCTCTGTTAAAACTCCGTTCTTGTAGCTGCTCTTGATT
AGCTGGAGTTTTTGCTTTTCGGTTTGGATATCAGATCGGACTGGCCATTG
CGTTTTGATTTGCTTGAGAGTGCCGAGAACTTCTGGTAAGAGATGAGAAG
CATTATTGGCCATCATCGTTCGAACTACCAATATAACAGATTCCATGTCT
GCCATCTTGCCGTTCTTCATCTTTCTGTCAATTCGATCCTTGAGAACTTT
CACGATTTTCTCCACAGATTTCTCGCGACAAGCTCTTCCAAATTGTTTTC
CGGTGGATGTTTCTCGGAAGTCGATGCTTCACCGGTATCAGAGATTCCCT
CACGCCGGCGCCGTTTTTTTCCGGAAAGTTATCGGAAGCCAATTCCTTGT
TTTTCTTCCTTCTACTCGACATTGAAGGTCCACTCTGGGTTCCGTTTGGA
AAATGGAAACCACAATTGTTGCTTGGGGACCGATATATTGTAAATTAGAG
TAGCGAAGGGCGGCCTTCCGAAAAGTACAGCGAAAGAAATGAAGGAATTT
ATTGTGGTGACTGAGGATTGATTATATAAAATGAATGCCATTGGAGAAAA
CTCGAGCTGTAAACTGAAGTGAGTAATCCCTTAAGCGAGTCAGTAGAGAA
AACTCGAGCTGAGATAACTGAAGTGAGAAGATGGCGAAAAACCTCAGCTT
GGACAAAATTTTAGGCCCATTTTTCGGGCTGGGCCGGGTTAAATGAGCCT
GAATTTTTAGTTGAGCTTGGTCCAAATGCAGCCTGGCTCGGCCCGGCCCA
TGAGCATCTCTAGTTGCACTTATCTTAGTGTTATTTAAGTATATTTTTTT
ATTTTTTTCATTTGTTG
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