g.barbadense_cottongen_reftransV1_0093367, g.barbadense_cottongen_reftransV1_0093367 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0093367
Unique Name	g.barbadense_cottongen_reftransV1_0093367
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1892

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
At05	chromosome	g.barbadense_cottongen_reftransV1_0093367:1..1892 . At05:4831557..4835634 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPKN_ARATH (CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis thaliana GN=CIPK23 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.620e-40
Identity = 74/95 (77.89%), Postives = 87/95 (91.58%), Query Frame = 1

Query: 1297 VGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS 1581
            VGKYE+GRT+GEGTFAKVKFARN E G+ VA+K++DKEKVLK+KM  QIKREI+TMKLIKHPNV+R++EVM SKTKI+ VLE+VTGGELFDKI S
Sbjct:   28 VGKYELGRTLGEGTFAKVKFARNVENGDNVAIKVIDKEKVLKNKMIAQIKREISTMKLIKHPNVIRMFEVMASKTKIYFVLEFVTGGELFDKISS 122

HSP 2 Score: 95.5153 bits (236), Expect = 1.857e-19
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 1750 NNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            +NGR++EDEAR+YF QLIN VDYCHSRGVYHRDLKPENLLLDA G L
Sbjct:  122 SNGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGAL 168

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPK8_ARATH (CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.978e-40
Identity = 71/96 (73.96%), Postives = 88/96 (91.67%), Query Frame = 1

Query: 1291 RRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIV 1578
            R+VGKYE+GRTIGEGTFAKVKFA+NTETGE VA+KI+D+  ++K KM +QIKREI+ MKL++HP VVRLYEV+ S+TKI+I+LEY+TGGELFDKIV
Sbjct:    4 RKVGKYELGRTIGEGTFAKVKFAQNTETGESVAMKIVDRSTIIKRKMVDQIKREISIMKLVRHPCVVRLYEVLASRTKIYIILEYITGGELFDKIV 99

HSP 2 Score: 91.6633 bits (226), Expect = 2.624e-18
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1

Query: 1747 VNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            V NGR+ E EAR+YFHQLI+ VDYCHS+GVYHRDLKPENLLLD+ GNL
Sbjct:   99 VRNGRLSESEARKYFHQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNL 146

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPK9_ARATH (CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana GN=CIPK9 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.826e-39
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1

Query: 1264 REMSQPKIKRRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIV 1578
            R  + P  + RVG YEMGRT+GEG+FAKVK+A+NT TG+  A+KILD+EKV +HKM EQ+KREI+TMKLIKHPNVV + EVM SKTKI+IVLE V GGELFDKI 
Sbjct:    5 RRKATPASRTRVGNYEMGRTLGEGSFAKVKYAKNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIA 109

HSP 2 Score: 91.6633 bits (226), Expect = 2.371e-18
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1

Query: 1756 GRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            GR++EDEARRYF QLIN VDYCHSRGVYHRDLKPENL+LDA G L
Sbjct:  112 GRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVL 156

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: PP395_ARATH (Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.701e-39
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 1

Query: 1270 MSQPKIKRRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKI 1575
            MS+PK++R VGKYE+GR IGE  F K++ A +TETG+PVAL ILDK+KVLKHKMAEQIKREI+ MKLI HPNVV+LYEV+ SK KI+IVLE+++GG+LFDKI
Sbjct:    1 MSEPKVRRWVGKYEVGRLIGECNFGKLRSAVDTETGDPVALMILDKDKVLKHKMAEQIKREISIMKLINHPNVVQLYEVLASKAKIYIVLEFISGGKLFDKI 102

HSP 2 Score: 95.1301 bits (235), Expect = 5.557e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 1750 NNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            N+GRM EDEA+RYF QLIN VDYCHSRGVYHRDLKPENLLLDA  NL
Sbjct:  104 NDGRMNEDEAQRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAQENL 150

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPKO_ARATH (CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.004e-38
Identity = 69/96 (71.88%), Postives = 88/96 (91.67%), Query Frame = 1

Query: 1291 RRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIV 1578
            RRVGKYE+GRTIGEGTFAKVKFARNT+TG+ VA+KI+ K  +LK++M +QIKREI+ MK+++HPN+VRLYEV+ S +KI+IVLE+VTGGELFD+IV
Sbjct:    6 RRVGKYEVGRTIGEGTFAKVKFARNTDTGDNVAIKIMAKSTILKNRMVDQIKREISIMKIVRHPNIVRLYEVLASPSKIYIVLEFVTGGELFDRIV 101

HSP 2 Score: 78.1814 bits (191), Expect = 6.063e-14
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1

Query: 1747 VNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            V+ GR+ E E+R+YF QL++ V +CH +GVYHRDLKPENLLLD  GNL
Sbjct:  101 VHKGRLEESESRKYFQQLVDAVAHCHCKGVYHRDLKPENLLLDTNGNL 148

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPK3_ORYSJ (CBL-interacting protein kinase 3 OS=Oryza sativa subsp. japonica GN=CIPK3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.541e-38
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 1

Query: 1282 KIKRRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS 1581
            K++R +GKYE+GR IG+GTFAKV+FA+N ETG+ VA+KILDK KV KH++ EQI+REI TMKLI+HPNVV L+EVMGSKT+IFIVLEYV GGEL D I +
Sbjct:   11 KVRRCLGKYELGRAIGQGTFAKVRFAKNMETGDHVAIKILDKAKVQKHRLVEQIRREICTMKLIQHPNVVHLHEVMGSKTRIFIVLEYVMGGELHDIIAT 110

HSP 2 Score: 86.6557 bits (213), Expect = 1.043e-16
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 1753 NGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            +GR++EDEAR+YF QLIN VDYCHSRGVYHRDLK ENLLLD  GN+
Sbjct:  111 SGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKLENLLLDTAGNI 156

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPKI_ARATH (CBL-interacting serine/threonine-protein kinase 18 OS=Arabidopsis thaliana GN=CIPK18 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.750e-37
Identity = 82/209 (39.23%), Postives = 113/209 (54.07%), Query Frame = 1

Query: 1264 REMSQPKIKRRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            R    P+    +GKYE+G+ +G GTFAKV  A+N ++G+ VA+K++DKEK++K  +   IKREI+ ++ ++HP +V L+EVM +K+KI+ V+EY                           VGG  L                    F +           V  GR+ E+ ARRYF QLI+ V +CH RGVYHRDLKPENLLLD  GNL
Sbjct:   60 RSPRSPRNNILMGKYELGKLLGHGTFAKVYLAQNIKSGDKVAIKVIDKEKIMKSGLVAHIKREISILRRVRHPYIVHLFEVMATKSKIYFVMEY---------------------------VGGGEL--------------------FNT-----------VAKGRLPEETARRYFQQLISSVSFCHGRGVYHRDLKPENLLLDNKGNL 210

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPKP_ORYSJ (CBL-interacting protein kinase 25 OS=Oryza sativa subsp. japonica GN=CIPK25 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.764e-34
Identity = 79/196 (40.31%), Postives = 106/196 (54.08%), Query Frame = 1

Query: 1303 KYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            +YE G  +GEG FAKV   R+  TGE VA+K++DKEK+++    E IKREIA M+ ++HPNVVR++EVM +K +I +V+EYV GG              L+        GGAA                                        +RE EARR+F QL++ V YCHSRGV+HRD+K +NLL+D  GNL
Sbjct:   20 RYEFGPLVGEGNFAKVYLGRHRATGEEVAIKVMDKEKLVRLGATELIKREIAVMQRLRHPNVVRIHEVMANKRRICVVMEYVRGGA-------------LYRYFRRGPSGGAA---------------------------------------GLREHEARRFFQQLVSAVAYCHSRGVFHRDIKLDNLLVDEQGNL 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPKL_ORYSJ (CBL-interacting protein kinase 21 OS=Oryza sativa subsp. japonica GN=CIPK21 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.660e-34
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 1

Query: 1294 RVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIV 1578
            R+GKYEMGR +GEG F KVK AR+ +TG   A+KILD++++L  K+ EQIKREIAT+KL+KHPNVVRL+EV  SKTKI++VLEYV GGELFDKI 
Sbjct:   83 RMGKYEMGRALGEGHFGKVKLARHADTGAAFAIKILDRQRILAMKIDEQIKREIATLKLLKHPNVVRLHEVSASKTKIYMVLEYVNGGELFDKIA 177

HSP 2 Score: 70.0922 bits (170), Expect = 2.876e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1

Query: 1756 GRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            G++ E E R+ F QL++ V YCH +GVYHRDLKPEN+L+DA GN+
Sbjct:  180 GKLSEKEGRKLFQQLMDAVSYCHEKGVYHRDLKPENVLVDAKGNI 224

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Match: CIPKU_ORYSJ (CBL-interacting protein kinase 30 OS=Oryza sativa subsp. japonica GN=CIPK30 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.137e-33
Identity = 73/198 (36.87%), Postives = 103/198 (52.02%), Query Frame = 1

Query: 1297 VGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            +G+Y++GR +G GTFAKV  A    TGE VA+K+ DKE V +    EQ+KRE+  M+ + H +V+RL+EVM ++++I+ V+EY +GGELF ++                                       R   F   ++  +F                    QLI  V++CHSRGVYHRDLKPENLLLDA G+L
Sbjct:   14 MGRYKLGRLLGRGTFAKVYKAYKLATGEAVAIKVFDKEAVQRSGTVEQVKREVDVMRRVHHRHVIRLHEVMATRSRIYFVMEYASGGELFTRL--------------------------------------SRSPRFPEPVARRYF-------------------QQLITAVEFCHSRGVYHRDLKPENLLLDARGDL 154

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL
Match: A0A0E0K876_ORYPU (Non-specific serine/threonine protein kinase OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.048e-57
Identity = 110/201 (54.73%), Postives = 132/201 (65.67%), Query Frame = 1

Query: 1288 KRRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            + RVG+YE+G+TIGEG+FAKVK AR+T TG+ +A+K+LD+  VL+HKM EQIKREI+TMKLIKHPNVV+L+EVM SK+KI++VLEYV GGELFDKIV            +S R+G                                             EDEARRYFHQLIN VDYCHSRGVYHRDLKPENLLLD++G L
Sbjct:   21 RTRVGRYELGKTIGEGSFAKVKVARDTRTGDTLAIKVLDRNHVLRHKMVEQIKREISTMKLIKHPNVVQLHEVMASKSKIYMVLEYVDGGELFDKIV------------NSGRLG---------------------------------------------EDEARRYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGAL 164

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL
Match: A0A0D9Z1I8_9ORYZ (Non-specific serine/threonine protein kinase OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.080e-57
Identity = 110/199 (55.28%), Postives = 131/199 (65.83%), Query Frame = 1

Query: 1294 RVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            RVG+YE+G+TIGEG+FAKVK AR+T TG+ +A+K+LD+  VL+HKM EQIKREI+TMKLIKHPNVV+L+EVM SK+KI++VLEYV GGELFDKIV            +S R+G                                             EDEARRYFHQLIN VDYCHSRGVYHRDLKPENLLLD++G L
Sbjct:   23 RVGRYELGKTIGEGSFAKVKVARDTRTGDTLAIKVLDRNHVLRHKMVEQIKREISTMKLIKHPNVVQLHEVMASKSKIYMVLEYVDGGELFDKIV------------NSGRLG---------------------------------------------EDEARRYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGAL 164

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL
Match: A0A0D3FDA2_9ORYZ (Non-specific serine/threonine protein kinase OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.282e-57
Identity = 110/199 (55.28%), Postives = 131/199 (65.83%), Query Frame = 1

Query: 1294 RVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            RVG+YE+G+TIGEG+FAKVK AR+T TG+ +A+K+LD+  VL+HKM EQIKREI+TMKLIKHPNVV+L+EVM SK+KI++VLEYV GGELFDKIV            +S R+G                                             EDEARRYFHQLIN VDYCHSRGVYHRDLKPENLLLD++G L
Sbjct:   23 RVGRYELGKTIGEGSFAKVKVARDTRTGDTLAIKVLDRNHVLRHKMVEQIKREISTMKLIKHPNVVQLHEVMASKSKIYMVLEYVDGGELFDKIV------------NSGRLG---------------------------------------------EDEARRYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGAL 164

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL
Match: J3LJI0_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB03G12060 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.733e-57
Identity = 110/199 (55.28%), Postives = 129/199 (64.82%), Query Frame = 1

Query: 1294 RVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIVS**YL*YLHIMLDSHRVGGAALICFXXXXXXXXXXXXXREANFRSCISLNHFLILKVNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            RVG YE+G+TIGEG+FAKVK AR+T TGE  A+K+LD+  VL+HKM EQIKREI+TMKLIKHPNVV+L+EVM SK+KI++VLE+V GGELFDKIV            +S R+G                                             EDEARRYFHQLIN VDYCHSRGVYHRDLKPENLLLD++G L
Sbjct:   13 RVGDYELGKTIGEGSFAKVKIARHTRTGEAFAIKVLDRNHVLRHKMVEQIKREISTMKLIKHPNVVQLHEVMASKSKIYMVLEFVDGGELFDKIV------------NSGRLG---------------------------------------------EDEARRYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGAL 154

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL
Match: A0A061GT30_THECC (CBL-interacting serine/threonine-protein kinase 3 isoform 2 OS=Theobroma cacao GN=TCM_041026 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.655e-57
Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1270 MSQPKIKRRVGKYEMGRTIGEGTFAKVKFARNTETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEYVTGGELFDKIV 1578
            MSQPKIKRRVGKYE+GRTIGEGTFAKVKFARN+ETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLE+VTGGELFDKIV
Sbjct:    1 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIKREIATMKLIKHPNVVRLYEVMGSKTKIFIVLEFVTGGELFDKIV 103

HSP 2 Score: 99.3673 bits (246), Expect = 2.739e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 1747 VNNGRMREDEARRYFHQLINVVDYCHSRGVYHRDLKPENLLLDAYGNL 1890
            V +GRMRE+EARRYFHQLIN VDYCHSRGVYHRDLKPENLLLDAYGNL
Sbjct:  103 VKHGRMREEEARRYFHQLINAVDYCHSRGVYHRDLKPENLLLDAYGNL 150

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
CIPKN_ARATH	2.620e-40	77.89	CBL-interacting serine/threonine-protein kinase 23...	[more]
CIPK8_ARATH	5.978e-40	73.96	CBL-interacting serine/threonine-protein kinase 8 ...	[more]
CIPK9_ARATH	1.826e-39	69.52	CBL-interacting serine/threonine-protein kinase 9 ...	[more]
PP395_ARATH	5.701e-39	71.57	Pentatricopeptide repeat-containing protein At5g21...	[more]
CIPKO_ARATH	1.004e-38	71.88	CBL-interacting serine/threonine-protein kinase 24...	[more]
CIPK3_ORYSJ	1.541e-38	71.00	CBL-interacting protein kinase 3 OS=Oryza sativa s...	[more]
CIPKI_ARATH	2.750e-37	39.23	CBL-interacting serine/threonine-protein kinase 18...	[more]
CIPKP_ORYSJ	1.764e-34	40.31	CBL-interacting protein kinase 25 OS=Oryza sativa ...	[more]
CIPKL_ORYSJ	3.660e-34	68.42	CBL-interacting protein kinase 21 OS=Oryza sativa ...	[more]
CIPKU_ORYSJ	4.137e-33	36.87	CBL-interacting protein kinase 30 OS=Oryza sativa ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0093367 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0E0K876_ORYPU	1.048e-57	54.73	Non-specific serine/threonine protein kinase OS=Or...	[more]
A0A0D9Z1I8_9ORYZ	1.080e-57	55.28	Non-specific serine/threonine protein kinase OS=Or...	[more]
A0A0D3FDA2_9ORYZ	1.282e-57	55.28	Non-specific serine/threonine protein kinase OS=Or...	[more]
J3LJI0_ORYBR	1.733e-57	55.28	Uncharacterized protein OS=Oryza brachyantha GN=OB...	[more]
A0A061GT30_THECC	3.655e-57	97.09	CBL-interacting serine/threonine-protein kinase 3 ...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	SMART	SM00220	serkin_6	coord: 13..104 e-value: 0.0041 score: -92.6
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 13..102 e-value: 2.6E-22 score: 79.3
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 13..104 score: 18.817
None	No IPR available	GENE3D	3.30.200.20		coord: 4..103 e-value: 5.8E-37 score: 126.6
None	No IPR available	PANTHER	PTHR24343	SERINE/THREONINE KINASE	coord: 5..103
None	No IPR available	PANTHER	PTHR24343:SF189	CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3	coord: 5..103
IPR017441	Protein kinase, ATP binding site	PROSITE	PS00107	PROTEIN_KINASE_ATP	coord: 19..42
IPR011009	Protein kinase-like domain	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 9..103

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0093367 ID=g.barbadense_cottongen_reftransV1_0093367; Name=g.barbadense_cottongen_reftransV1_0093367; organism=Gossypium barbadense; type=contig; length=1892bp
CAAAAGCTTGTCTGGTTATAGTCTCAGCTGAGTCTTTTATTTCGGCTTTT
CTTATTTATGTCCGCCTCTTGAACTAACTCAAAAGCCATTTTTCCTTTTT
CCGCTCAGCCTCAAGAAGCTCGTAATTCTTCCTTTCTTATCCACTTCTCT
TCTCAAGTATATCCCTTTTTCTTTTTTCTCCTCCAATAATGATCATTCTT
TCAATCATATACGAATAAATAATTATTCTTTTATTATTTAATTGCTATAT
ATACTACTTAGAATTCTATACTTTCTAGTTTGTAGTGCCGTTATCGAATT
TGCTTCGAAGCTTGTACATTTTCGTACAAAAGAGATTGGATTTTTTACTG
TTGGTTGATGTTTCTTGACCCTTATAGGCCTTAGCTCAGCCTTTTCTGAT
ATCAATTCAACCCCCAAATTTATTTTGCTTTTCTGGGTAATTCTCGAGTT
CCTTAAACCAGCAAAAGCTTTACACTTGATTTTGTCCCTAGTGTGGACGA
TTAGTTTAAATTTCATGGCTTTGGGGGCGTAATGCATGCATTTCTCGCTT
TAAAAAATTTAATTGTTTTTATTATGATGTATTTTTTAATACCAACAAAG
AATTCGTGGTTGTAAGCAAGGGGAAAAGATCTAGGGGGTAATATTTTATG
TAGTAATTCATTTGTTTATGTCAATTTGTTAGCTGTTGATTATTTTATTA
TCTATGATGAGGTTGATACAAAGTACTTTTTTACTCTCTCTCTCTCTTAT
TTAAGCTGAATTTTCCAGATTTCTGCATCATTTGAAAAAAAAATAATTTA
AAGGACATGCCTCTGTACTTTTGAGGTTCTTAGCAAAAAAATCTATTGAG
TGTTAATTGTGAGTAGTTTACTCCATTTGGCTGTTTTATTTTGCCGAGAT
TTTACCTTTTTTTTTCTCGTTTTGATCATAAGTTTATTTTTTTATGTCTG
ATGCCATTTCAATGACAATTACCTTTCATATTCTAGGGATTAGATCAGTT
TTATTGCTTCAAATTGAATTTCCACCAATTTTTCTACTTGAACTGAGATT
CGCATATTCCAGATAATGTTCTTGTGCTATATGTTAATGAGGAGTTTTTA
AAGATTGAATAGTCACTTTTCAACGTTCCTTTTGCTTCATAATTTGGTGT
TTTAAGCCCTTCTTTTTATGATTTGATGCTGTGTGATACTGCAAAATTGA
GTGATAAAGATGCTCGTCTCAGGAACAGGTTTTAAGAGCTTGCAAAAGTG
AAGTAAAGATATAAGAGAAATGAGTCAACCTAAAATTAAGCGGCGCGTGG
GTAAATATGAGATGGGAAGGACAATTGGGGAAGGAACATTTGCTAAAGTG
AAGTTTGCAAGAAATACAGAGACTGGAGAACCTGTGGCACTTAAGATCCT
TGATAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAACAGATCAAGAGGG
AAATAGCAACAATGAAGTTGATAAAGCATCCAAATGTTGTCCGTTTATAC
GAGGTAATGGGAAGCAAGACAAAGATATTTATTGTTTTGGAGTATGTCAC
CGGGGGAGAGCTCTTTGACAAAATTGTAAGTTGATGATATCTGTGATACT
TGCATATTATGTTAGATTCTCATCGTGTTGGTGGAGCTGCACTAATATGT
TTCCTAGTTTCAGTACTGATTTAATATTTGTACCTTGTTTTAAGAGAAGC
TAACTTTAGATCTTGTATATCTTTAAACCATTTCTTAATTCTGAAGGTAA
ACAACGGAAGGATGAGAGAAGATGAGGCACGAAGATATTTCCACCAGCTC
ATTAATGTTGTTGATTACTGCCATAGCAGAGGCGTCTACCATAGGGATCT
TAAGCCTGAAAATTTGCTGTTGGATGCATATGGTAACCTCAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR017441	Protein_kinase_ATP_BS
IPR011009	Kinase-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004672	protein kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

Search form

g.barbadense_cottongen_reftransV1_0093367, g.barbadense_cottongen_reftransV1_0093367 (contig) Gossypium barbadense

Pages

Pages