g.barbadense_cottongen_reftransV1_0093258, g.barbadense_cottongen_reftransV1_0093258 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 2.135e-69 Identity = 86/154 (55.84%), Postives = 110/154 (71.43%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGL-ISKSKAGEKYGN----YVLQFADDFSYTDPV--SISSLQ 441 VA + +E PTGWKFFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R + + D++K+HW +GRNFF+RYDYEE E+EGANKM++ L L + +S G+++ Y ++ AD+F Y+DPV SIS Q Sbjct: 344 VANATKIASYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------RVEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQ 488 HSP 2 Score: 113.235 bits (282), Expect = 2.135e-69 Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VDGS++ QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E DA+K + D QV L PLI +AL VS+L++ TGR PTVIT Sbjct: 480 VDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy Swiss-Prot
Match: PGM1_BOVIN (Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.895e-69 Identity = 89/154 (57.79%), Postives = 111/154 (72.08%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLIS-KSKAGEKYG----NYVLQFADDFSYTDPV--SISSLQ 441 VA + +E PTGWKFFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R + S+ D++K+HW YGRNFF+RYDYEE E+EGANKM++ L LIS +S G+++ Y ++ D+F Y+DPV SIS Q Sbjct: 344 VANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKVYTVEKIDNFEYSDPVDGSISRNQ 488 HSP 2 Score: 108.227 bits (269), Expect = 4.895e-69 Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VDGS++ QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K D QV L PLI +AL VS+L++ TGR PTVIT Sbjct: 480 VDGSISRNQGLRLLFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKVSQLQEKTGRTAPTVIT 562
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy Swiss-Prot
Match: PGM1_RABIT (Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 2.659e-68 Identity = 82/146 (56.16%), Postives = 105/146 (71.92%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLI-SKSKAGEKYGN----YVLQFADDFSYTDPV 423 VA + +E PTGWKFFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R + S+ D++K+HW +GRNFF+RYDYEE E+EGA KM++ L L+ +S G+++ Y ++ AD+F Y DPV Sbjct: 344 VANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPV 480 HSP 2 Score: 111.309 bits (277), Expect = 2.659e-68 Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VDGSV+ QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K + D QV L PLI +AL VS+L++ TGR PTVIT Sbjct: 480 VDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy Swiss-Prot
Match: PGM_RHIRD (Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.455e-65 Identity = 83/144 (57.64%), Postives = 107/144 (74.31%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLISKSKAGEKYGNYVLQFADDFSYTDPVSIS 432 VAEKLGL +E PTGWKFFGNLMDAGK++ICGEESFGTGS+H+REKDG+WAVL WL+I+A R + S+ D+V +HWA YGRN++SR+DYEE +S+ AN ++ LR ++ + G YGN + ADDF+Y DPV S Sbjct: 330 VAEKLGLGMYETPTGWKFFGNLMDAGKVTICGEESFGTGSNHVREKDGLWAVLYWLNIVAARKE---------SVKDIVTKHWAEYGRNYYSRHDYEEVDSDAANTLVAILREKLA-TLPGTSYGNLKVAAADDFAYHDPVDQS 463 HSP 2 Score: 94.3597 bits (233), Expect = 1.455e-65 Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VD SV+ QG+R +F GSRI+ RLSGTG+AGAT+R+Y+E++EPDA++H ++ Q AL LI +A +++ +K T +PTVIT Sbjct: 460 VDQSVSKNQGIRILFEGGSRIVLRLSGTGTAGATLRLYVERYEPDAARHGIETQSALADLISVADTIAGIKAHTADSEPTVIT 542
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy Swiss-Prot
Match: PGM1_DICDI (Phosphoglucomutase-1 OS=Dictyostelium discoideum GN=pgmA PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.731e-65 Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLI-SKSKAGEKYGN------YVLQFADDFSYTDPV--SISSLQ 441 VA L + FFEVPTGWKFFGNLMDAG LSICGEESFGTGSDHIREKDGIWA++ WL I+ + N+ + VSI ++VK+HWA YGRN++SRYDYEE ++ A M++++ I SK G+K+ Y + DDF Y DP+ S+SS Q Sbjct: 343 VATDLKVPFFEVPTGWKFFGNLMDAGTLSICGEESFGTGSDHIREKDGIWAIICWLQILTHHNQSTN-DKNFVSIEEIVKQHWAKYGRNYYSRYDYEEIDTAPAEAMMKHVSQQIESKQLIGKKFTGISDSLEYEIASCDDFEYKDPIDSSVSSHQ 497 HSP 2 Score: 99.7525 bits (247), Expect = 2.731e-65 Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLAL-SVSKLKDFTGREKPTVIT 749 +D SV+S QG+R +FTDGSRII+RLSGTGS GATVR+Y +++E ++ + D Q LK LI +AL +SKL +TGR +P VIT Sbjct: 489 IDSSVSSHQGLRIIFTDGSRIIYRLSGTGSTGATVRVYFDKYETQPTQLNNDVQTHLKSLIHIALVEISKLNHYTGRNEPNVIT 572
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy TrEMBL
Match: D7T1T9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02320 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 1.309e-115 Identity = 136/149 (91.28%), Postives = 141/149 (94.63%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLISKSKAGEKYGNYVLQFADDFSYTDPV--SISSLQ 441 VAEKL L FFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKL S++DVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLR L+SKSKAGEKYGNY LQFADDFSYTDPV S++S Q Sbjct: 392 VAEKLTLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLASVADVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRDLVSKSKAGEKYGNYALQFADDFSYTDPVDGSVASKQ 540 HSP 2 Score: 160.229 bits (404), Expect = 1.309e-115 Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VDGSVASKQGVRFVFTDGSRII+RLSGTGSAGATVRIYIEQFEPD SKH+MDAQ ALKPLIDLALS+SKLKDFTGREKPTVIT Sbjct: 532 VDGSVASKQGVRFVFTDGSRIIYRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQAALKPLIDLALSLSKLKDFTGREKPTVIT 614
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy TrEMBL
Match: D7MLB3_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496395 PE=4 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 6.473e-115 Identity = 168/320 (52.50%), Postives = 224/320 (70.00%), Query Frame = -1 Query: 1054 TVVDDPYKRLEITRNPNGSLTRNPNRFPNTSATPDPDPTVPVLSKDVTINQTTHTWARVFLPRQKPLD---TNKFPLIVYYHAGGFIHCSAASTIFHVFCSNMALKLQAIVVSVDYRLAPEHRLPAAYDDAIEALLWIKTTQEEWLTQYANFTTCFVMGSSSGANIAYHAGIRVAEEADGLRPWKIRGLILHQPFFGGSVKVESELRLVNDPVLPPGVGDLMWELALPIGVDRDHEYCNPTTTKGTNLMEKLAAVGWKVLVTGCDGDPLIDRQVELVKSMEEKGVKVVSHFRMGDHHGVDFMQPDKANALFLVLKDFIAS 2004 T + DPY L I +NP+GS+TR+ FP +ATPDP P P +SKD+ +NQ+ TW R++LP D + K PL+VYYH GGFI CS FH FCS MA L AIVVS YRLAPEHRLPAAYDD +EAL WIKT+ +EW+ +A+F+ F+MG+S+G N+AY+ G+R A+ L P +IRGLILH PFFGG + SE+RLVND V PP V D+MW+L+LP+GVDRDHEY NPT G+ +EK + WKV++ G + DP+IDRQ ++ K M+++GV++V H+ +G HG + +P K LFL +K+FI+S Sbjct: 6 TPISDPYAFLNIVKNPDGSITRDLTNFPCAAATPDPTPENPAVSKDLPVNQSKSTWLRLYLPSSAVNDGVSSQKLPLVVYYHGGGFILCSVDMQPFHDFCSEMARDLNAIVVSPSYRLAPEHRLPAAYDDGMEALEWIKTSDDEWIKSHADFSKVFLMGTSAGGNLAYNVGLRSADSVSDLNPLQIRGLILHHPFFGGEERCGSEIRLVNDQVCPPIVTDVMWDLSLPVGVDRDHEYSNPTVGDGSEDLEKFGRLRWKVMMIGGEDDPMIDRQRDVAKLMKKRGVELVEHYTVGHVHGAEIGEPSKRKTLFLSIKNFISS 325
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy TrEMBL
Match: W9SJT4_9ROSA (Phosphoglucomutase OS=Morus notabilis GN=L484_002800 PE=4 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 1.109e-114 Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLISKSKAGEKYGNYVLQFADDFSYTDPV--SISSLQ 441 VAEKL L FFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKL+S++DVVKEHWATYGRNFFSRYDYEECESEGANKMI+YLR LISKSK G+KYGNYVLQ ADDF+YTDPV S++S Q Sbjct: 380 VAEKLSLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLISVADVVKEHWATYGRNFFSRYDYEECESEGANKMIDYLRDLISKSKPGDKYGNYVLQVADDFTYTDPVDSSVASKQ 528 HSP 2 Score: 160.999 bits (406), Expect = 1.109e-114 Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VD SVASKQGVRFVFTDGSRIIFRLSGTGSAGAT+R+YIEQFEPDASKHD+DAQ+ALKPLIDLALSVSKLKDFTGREKPTVIT Sbjct: 520 VDSSVASKQGVRFVFTDGSRIIFRLSGTGSAGATIRVYIEQFEPDASKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 602
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy TrEMBL
Match: B9I4H0_POPTR (Phosphoglucomutase family protein OS=Populus trichocarpa GN=POPTR_0012s14030g PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 4.126e-114 Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLISKSKAGEKYGNYVLQFADDFSYTDPV 423 VAEKL L FFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVS++DVVKEHWATYGRNFFSRYDYEECESEGANKMI+YLR L+SKSK G+KYGNY LQFADDF+YTDPV Sbjct: 409 VAEKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSVADVVKEHWATYGRNFFSRYDYEECESEGANKMIQYLRDLVSKSKPGDKYGNYTLQFADDFTYTDPV 549 HSP 2 Score: 159.458 bits (402), Expect = 4.126e-114 Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VDGSV SKQG+RFVFTDGSRIIFRLSGTGSAGATVRIY+EQFEPD SKH+MDAQ+ALKPLIDLALSVSKLKDFTGR+KPTVIT Sbjct: 549 VDGSVVSKQGIRFVFTDGSRIIFRLSGTGSAGATVRIYVEQFEPDVSKHEMDAQIALKPLIDLALSVSKLKDFTGRDKPTVIT 631
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy TrEMBL
Match: A0A061G7L2_THECC (Phosphoglucomutase isoform 1 OS=Theobroma cacao GN=TCM_015041 PE=4 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 4.265e-114 Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 1 Query: 1 VAEKLGLTFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSISDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRGLISKSKAGEKYGNYVLQFADDFSYTDPV--SISSLQ 441 VAEKL LTFFEVPTGWKFFGNLMD GKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGE LVS+SDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLR L+SK+K G KYG+YVLQFADDF+YTDPV S++S Q Sbjct: 417 VAEKLSLTFFEVPTGWKFFGNLMDDGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGETLVSVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRDLVSKNKEGAKYGDYVLQFADDFAYTDPVDGSVASKQ 565 HSP 2 Score: 161.77 bits (408), Expect = 4.265e-114 Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 3 Query: 501 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDASKHDMDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 749 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGAT+RIYIEQFEPD SKHDMDAQVALK LIDLALSVSKLKDFTGREKPTVIT Sbjct: 557 VDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATIRIYIEQFEPDVSKHDMDAQVALKRLIDLALSVSKLKDFTGREKPTVIT 639 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0093258 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093258 ID=g.barbadense_cottongen_reftransV1_0093258; Name=g.barbadense_cottongen_reftransV1_0093258; organism=Gossypium barbadense; type=contig; length=2307bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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