g.barbadense_cottongen_reftransV1_0092935, g.barbadense_cottongen_reftransV1_0092935 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Match: MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 3.994e-35 Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVSI 829 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR+NLNRRRRRSSLFDITTDSVS+ Sbjct: 94 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSV 166 HSP 2 Score: 51.9878 bits (123), Expect = 3.994e-35 Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 3 Query: 345 IMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSNA--------------DAGYAS--DDVLHGSGIGRSRERKRGI 518 IMLFGVRV RKSVS+N+LSQ++ P +N D GYAS D V H S G RERKRG+ Sbjct: 24 IMLFGVRVKVDPMRKSVSLNDLSQYEHPNANNNNNGGDNNESSKVAQDEGYASADDAVQHQSNSG--RERKRGV 95
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Match: DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.661e-21 Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVS 826 GVPWTEEEHKLFL+GL+K GKGDWR ISRNFV TRTPTQVASHAQKYF+R+ + + +RR+S+ DITT ++S Sbjct: 131 GVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLS 202
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 6.605e-8 Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 2 Query: 620 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 754 WT+EEH FL G+Q GKG W+ I++ FV TRTPTQ+ SHAQKY+ Sbjct: 379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYY 422
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: B8LLJ2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.434e-40 Identity = 63/70 (90.00%), Postives = 70/70 (100.00%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDS 820 GVPWTEEEH++FL+GLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR++N+NRRRRRSSLFDITTD+ Sbjct: 84 GVPWTEEEHRMFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQSNMNRRRRRSSLFDITTDT 153 HSP 2 Score: 84.3445 bits (207), Expect = 1.434e-40 Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 3 Query: 225 MSRSCSHCGNNGHNSRTCGEVVAGDASNXXXXXXXXXXXXIMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSNADA-------GYASDDVLHGSGIGRSRERKRGI 518 MSRSCS CG+NGHNSRTC G+A +MLFGVR+ +G RKSVSMNNLS Q + S+ GY SDD++H S +RERKRG+ Sbjct: 1 MSRSCSQCGHNGHNSRTC----VGNA--------------VMLFGVRLTDGPMRKSVSMNNLSNLSQYEHSDPAEDGAEGFDGYVSDDLVHSS--SNARERKRGV 85
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: K4BKL4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g113620.2 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 2.202e-39 Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVSI 829 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR NLNRRRRRSSLFDITTDSVS+ Sbjct: 114 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSV 186 HSP 2 Score: 71.633 bits (174), Expect = 2.202e-39 Identity = 55/120 (45.83%), Postives = 65/120 (54.17%), Query Frame = 3 Query: 225 MSRSCSHCGNNGHNSRTCGEVVAGDASNXXXXXXXXXXX--XIMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSN------------------ADAGYAS--DDVLHGSGIGRSRERKRGI 518 MS CS N+GHNS TC AG++S + GGG IMLFGVRV RKSVS+NNLSQ++QP ++ AD GYAS D V H SG G RERKRG+ Sbjct: 2 MSSFCSQSANDGHNSFTC----AGESSPAAVSVGGGVGGGGEIMLFGVRVKVDPMRKSVSLNNLSQYEQPNSNDNNNNNSNSGNNNDASKVAADEGYASADDAVPHHSGSG--RERKRGV 115
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: M1CA69_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024572 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.837e-39 Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVSI 829 G+PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR NLNRRRRRSSLFDITTDSVS+ Sbjct: 107 GIPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSV 179 HSP 2 Score: 70.8626 bits (172), Expect = 6.837e-39 Identity = 53/116 (45.69%), Postives = 61/116 (52.59%), Query Frame = 3 Query: 225 MSRSCSHCGNNGHNSRTCGEVVAGDASNXXXXXXXXXXXXIMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSN----------------ADAGYAS--DDVLHGSGIGRSRERKRGI 518 MS CS GN+GHNS TC V+ G G IMLFGVR+ RKSVS+NNLSQ++QP ++ AD GYAS D V H SG G RERKRGI Sbjct: 3 MSSCCSQSGNDGHNSFTCAGDVSVGGGVGGGE--------IMLFGVRMKVDPMRKSVSLNNLSQYEQPNSNDNNNSNSGNNNDSSKVAADEGYASADDAVPHHSGSG--RERKRGI 108
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: E3WDH5_COPJA (Transcriptional factor MYB-3 OS=Coptis japonica GN=MYB-3 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.276e-38 Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDS 820 GVPWTEEEH+LFLLGL+KVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR+NN NRRRRRSSLFDITTD+ Sbjct: 56 GVPWTEEEHRLFLLGLKKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRKNNQNRRRRRSSLFDITTDT 125 HSP 2 Score: 76.6406 bits (187), Expect = 1.276e-38 Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 3 Query: 348 MLFGVRVMEGSFRKSVSMNNLSQFDQPQVSNAD--AGYASDDVLHGSGIGRSRERKRGI 518 MLFGVRV EGS RKSVS+N+LS ++QPQ N D +GYASDDV+H S R+RERKRG+ Sbjct: 1 MLFGVRVTEGSIRKSVSLNDLSLYEQPQEPNPDLTSGYASDDVVHNS--IRNRERKRGV 57
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: M5WA62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009283mg PE=4 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.108e-38 Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 2 Query: 611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVS 826 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNN NRRRRRSSLFDITTD+V+ Sbjct: 86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNHNRRRRRSSLFDITTDTVT 157 HSP 2 Score: 70.8626 bits (172), Expect = 3.108e-38 Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 3 Query: 345 IMLFGVRVMEGSFRKSVSMNNLSQFDQPQ-----------VSNAD--AGYASD-DVLHGSGIGRSRERKRGI 518 IMLFGVRV+ S RKSVS+NNLSQ++QPQ ++ D AGYAS+ DV+H SG R RERKRG+ Sbjct: 16 IMLFGVRVVIDSMRKSVSLNNLSQYEQPQEGSNNNSGNNTIAGKDDVAGYASENDVVHNSGGNRERERKRGV 87 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 3
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092935 ID=g.barbadense_cottongen_reftransV1_0092935; Name=g.barbadense_cottongen_reftransV1_0092935; organism=Gossypium barbadense; type=contig; length=1925bpback to top |