g.barbadense_cottongen_reftransV1_0092935, g.barbadense_cottongen_reftransV1_0092935 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092935
Unique Nameg.barbadense_cottongen_reftransV1_0092935
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1925
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Match: MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.994e-35
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVSI 829
            GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR+NLNRRRRRSSLFDITTDSVS+
Sbjct:   94 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSV 166          

HSP 2 Score: 51.9878 bits (123), Expect = 3.994e-35
Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 3
Query:  345 IMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSNA--------------DAGYAS--DDVLHGSGIGRSRERKRGI 518
            IMLFGVRV     RKSVS+N+LSQ++ P  +N               D GYAS  D V H S  G  RERKRG+
Sbjct:   24 IMLFGVRVKVDPMRKSVSLNDLSQYEHPNANNNNNGGDNNESSKVAQDEGYASADDAVQHQSNSG--RERKRGV 95          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Match: DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.661e-21
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVS 826
            GVPWTEEEHKLFL+GL+K GKGDWR ISRNFV TRTPTQVASHAQKYF+R+ +  + +RR+S+ DITT ++S
Sbjct:  131 GVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLS 202          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.605e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  620 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 754
            WT+EEH  FL G+Q  GKG W+ I++ FV TRTPTQ+ SHAQKY+
Sbjct:  379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYY 422          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: B8LLJ2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.434e-40
Identity = 63/70 (90.00%), Postives = 70/70 (100.00%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDS 820
            GVPWTEEEH++FL+GLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR++N+NRRRRRSSLFDITTD+
Sbjct:   84 GVPWTEEEHRMFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRQSNMNRRRRRSSLFDITTDT 153          

HSP 2 Score: 84.3445 bits (207), Expect = 1.434e-40
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  225 MSRSCSHCGNNGHNSRTCGEVVAGDASNXXXXXXXXXXXXIMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSNADA-------GYASDDVLHGSGIGRSRERKRGI 518
            MSRSCS CG+NGHNSRTC     G+A              +MLFGVR+ +G  RKSVSMNNLS   Q + S+          GY SDD++H S    +RERKRG+
Sbjct:    1 MSRSCSQCGHNGHNSRTC----VGNA--------------VMLFGVRLTDGPMRKSVSMNNLSNLSQYEHSDPAEDGAEGFDGYVSDDLVHSS--SNARERKRGV 85          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: K4BKL4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g113620.2 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.202e-39
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVSI 829
            GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR NLNRRRRRSSLFDITTDSVS+
Sbjct:  114 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSV 186          

HSP 2 Score: 71.633 bits (174), Expect = 2.202e-39
Identity = 55/120 (45.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  225 MSRSCSHCGNNGHNSRTCGEVVAGDASNXXXXXXXXXXX--XIMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSN------------------ADAGYAS--DDVLHGSGIGRSRERKRGI 518
            MS  CS   N+GHNS TC    AG++S  +   GGG      IMLFGVRV     RKSVS+NNLSQ++QP  ++                  AD GYAS  D V H SG G  RERKRG+
Sbjct:    2 MSSFCSQSANDGHNSFTC----AGESSPAAVSVGGGVGGGGEIMLFGVRVKVDPMRKSVSLNNLSQYEQPNSNDNNNNNSNSGNNNDASKVAADEGYASADDAVPHHSGSG--RERKRGV 115          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: M1CA69_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024572 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.837e-39
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVSI 829
            G+PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRR NLNRRRRRSSLFDITTDSVS+
Sbjct:  107 GIPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSV 179          

HSP 2 Score: 70.8626 bits (172), Expect = 6.837e-39
Identity = 53/116 (45.69%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  225 MSRSCSHCGNNGHNSRTCGEVVAGDASNXXXXXXXXXXXXIMLFGVRVMEGSFRKSVSMNNLSQFDQPQVSN----------------ADAGYAS--DDVLHGSGIGRSRERKRGI 518
            MS  CS  GN+GHNS TC   V+     G G         IMLFGVR+     RKSVS+NNLSQ++QP  ++                AD GYAS  D V H SG G  RERKRGI
Sbjct:    3 MSSCCSQSGNDGHNSFTCAGDVSVGGGVGGGE--------IMLFGVRMKVDPMRKSVSLNNLSQYEQPNSNDNNNSNSGNNNDSSKVAADEGYASADDAVPHHSGSG--RERKRGI 108          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: E3WDH5_COPJA (Transcriptional factor MYB-3 OS=Coptis japonica GN=MYB-3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.276e-38
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDS 820
            GVPWTEEEH+LFLLGL+KVGKGDWRGISRNFVKTRTPTQVASHAQKYFLR+NN NRRRRRSSLFDITTD+
Sbjct:   56 GVPWTEEEHRLFLLGLKKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRKNNQNRRRRRSSLFDITTDT 125          

HSP 2 Score: 76.6406 bits (187), Expect = 1.276e-38
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 3
Query:  348 MLFGVRVMEGSFRKSVSMNNLSQFDQPQVSNAD--AGYASDDVLHGSGIGRSRERKRGI 518
            MLFGVRV EGS RKSVS+N+LS ++QPQ  N D  +GYASDDV+H S   R+RERKRG+
Sbjct:    1 MLFGVRVTEGSIRKSVSLNDLSLYEQPQEPNPDLTSGYASDDVVHNS--IRNRERKRGV 57          
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Match: M5WA62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009283mg PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.108e-38
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 2
Query:  611 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFXXXXXXXXXXXXXXXFDITTDSVS 826
            GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNN NRRRRRSSLFDITTD+V+
Sbjct:   86 GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNHNRRRRRSSLFDITTDTVT 157          

HSP 2 Score: 70.8626 bits (172), Expect = 3.108e-38
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  345 IMLFGVRVMEGSFRKSVSMNNLSQFDQPQ-----------VSNAD--AGYASD-DVLHGSGIGRSRERKRGI 518
            IMLFGVRV+  S RKSVS+NNLSQ++QPQ           ++  D  AGYAS+ DV+H SG  R RERKRG+
Sbjct:   16 IMLFGVRVVIDSMRKSVSLNNLSQYEQPQEGSNNNSGNNTIAGKDDVAGYASENDVVHNSGGNRERERKRGV 87          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
MY1R1_SOLTU3.994e-3597.26Transcription factor MYB1R1 OS=Solanum tuberosum P... [more]
DIV_ANTMA6.661e-2172.22Transcription factor DIVARICATA OS=Antirrhinum maj... [more]
MYBJ_DICDI6.605e-862.22Myb-like protein J OS=Dictyostelium discoideum GN=... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0092935 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B8LLJ2_PICSI1.434e-4090.00Putative uncharacterized protein OS=Picea sitchens... [more]
K4BKL4_SOLLC2.202e-3997.26Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1CA69_SOLTU6.837e-3995.89Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
E3WDH5_COPJA1.276e-3892.86Transcriptional factor MYB-3 OS=Coptis japonica GN... [more]
M5WA62_PRUPE3.108e-3895.83Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092935 ID=g.barbadense_cottongen_reftransV1_0092935; Name=g.barbadense_cottongen_reftransV1_0092935; organism=Gossypium barbadense; type=contig; length=1925bp
GCACATTGGAGGGTCCTGATTCATGATCTAGAAAATCAAGATTTTATGGT
AGATATTGAACTTCAGTAAGACATGATGTAGCTTTCAGTGAGTCCTTGTA
AAGCACTGGTTAATTTGCACTATATATGAACCACAGCATCCCTTTAGTTA
TCTTTTCTTATATTCCATTTTTCTTCTTCTTCATTTAGGATTCAACGATT
CTCTTCCCTTTCATGACCACGAGTATGTCTCGTAGCTGCTCTCACTGTGG
AAACAACGGCCACAACTCTCGTACGTGCGGTGAAGTTGTTGCCGGTGATG
CAAGCAATGGCAGCGGTGGAAGTGGAGGAGGAGAAGAGAAGGGTATCATG
TTATTCGGTGTTCGAGTCATGGAAGGGTCGTTCAGGAAAAGTGTTAGCAT
GAATAATCTTTCTCAGTTCGATCAACCTCAGGTTTCTAACGCCGATGCTG
GCTATGCTTCTGATGACGTTCTTCATGGATCTGGAATAGGAAGAAGCCGT
GAACGCAAGAGAGGTATAATAATTCAAATATTCATGATCGAATTACATAT
TAATGAATAGATTAATGTTGATTTTTTAGTTTTTATTTTGAAATTTTGAT
TTTGTTTATAGGTGTACCATGGACGGAAGAGGAACATAAATTATTTTTAT
TGGGGTTGCAAAAAGTAGGGAAAGGGGATTGGAGAGGAATTTCAAGAAAT
TTTGTGAAGACACGTACACCTACCCAAGTGGCTAGTCATGCTCAAAAGTA
TTTTCTTAGGAGAAATAACTTGAATAGGAGGCGTCGTAGATCTAGTCTTT
TTGATATAACAACTGATTCGGTAAGCATCTATAAATATTTATTTAAATTT
GGTTTTTGTTATTAATTCTAAACTTGTCAATGAGTCGGGTCAAACCCTAA
CAAAATTTTAGATTCATTTGATAGGTCCAGGCTTGAACAAAAAATGGGCC
TAAACTTTTGCCAAAACTCAATTCGGATTATAAATGTTAAACTCGAGCAC
GGCTTAACCTGTATTCGAGCCCAAAAACCTTACGACTTAGCTCGTATTCA
GACCCTAACAAAAATAGTGGAAAAACAACAGTAAAATAGTAAGTTTTTTT
TTTACCAATTCGGGCCGAACTCTAATCAAAAAATCCTACCCGAGGCTTAA
CTCATTTTCTGAACTGGTCTTATTTTTTGCTCAAGCTCATTTTTCGAGTT
TATATTTTTATCTAAACCCTCCTATTTTTTAGGCGGATTTTCAACCCGAC
CCATGGATAGGTATCATATTCAATCCTACGGTTCATAAATTTTAATATAT
TTGATTTTCGTGATGAATCCTGCAGTTCATAAATTCGACCATATTGGAAG
AAGATGAAGTCGCCCATCAAGAAAACGTTTCGTCACCACAGATGAATGGA
TTTTCTATGCCGACAACGTTTCCGGCAACTCTAAGTTTGACTGATTTATC
AGTAACAGAAAATAATAACTCGAAGGAGAATCTCATATCAAGGCCGCCGA
GCCCCAAAGCGAACACCTCTTCTTATGTTATCTGTCCAATACCGGTTCTT
CCCGCTCCTCCATCATCGAAAATGGCTGATCTTAATTTAAACCAGAAAGC
CGAAGAAGACCGTTTACCTCTATCGCTAAAACTCTCGACACCATCCGCCG
ATGAGCAATCAACAGCAGCGGCACACTCGTCTACTCTCGTCGTCATGTCA
AATGGGGATAACAATAGCATCATCAGCGTTGCTTGAAAATTAAATGAAGT
AAATAATTAGGTGAAAAAATTATTGGAGTATTTGGTAATTAGGTGAAATT
CCTTGTTTTGTACAGCATAATTATTACTGAGATTGCATTAGATTGAAAAA
AATTATTAGACTGTTGGGTAATTAGGTGAAATTCCTTGTTTTGTACAGCA
TAATTATTACTGAGATTGCATTAGA
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