g.barbadense_cottongen_reftransV1_0092932, g.barbadense_cottongen_reftransV1_0092932 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: M5W9S3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008324mg PE=4 SV=1) HSP 1 Score: 524.628 bits (1350), Expect = 2.170e-175 Identity = 255/332 (76.81%), Postives = 293/332 (88.25%), Query Frame = -2 Query: 332 RYFETLQKELAPYDCVLYEMVASRESLENRR--NPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYADKA 1321 RYFETLQKEL YDCVLYEMV SRESLENRR + ++K SRS+GFNILGCIQRQMAR L L+FQLDCLDY+++NWYHADLD+ETF+LLQ EKGESFFTFARDMT++STKA++Q A+IP+ L PWRSKL WA+RVLPMPLVGLLII GVCAD GS+ S +PE EALSRLDFGAAMKVFLAKRLTSEFTQ TADVEE SVIIGERNRAA +ALR+A++ G+N+IAILYGGGHMPDLGRRL +E +L+P++ WI+AWSI KQDL S+SLPFLK MAEVSGWPLNRYQTLALLIFSSVLALDLWFWELF GTAVNW ++AS+V++Y D + Sbjct: 3 RYFETLQKELESYDCVLYEMVTSRESLENRRILAATKRLKVKGSRSKGFNILGCIQRQMARFLTLDFQLDCLDYESENWYHADLDFETFQLLQQEKGESFFTFARDMTVRSTKAMIQTATIPEGLGPWRSKLKWAARVLPMPLVGLLIIGGVCADTGSEDSEFPEFEALSRLDFGAAMKVFLAKRLTSEFTQATADVEESSVIIGERNRAAMDALRKAIDGGNNRIAILYGGGHMPDLGRRL-QELELIPTQAQWISAWSIRKQDLNSSSLPFLKKMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFFGTAVNWSYQLASQVSEYIDNS 333
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: A0A022Q5Y3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006454mg PE=4 SV=1) HSP 1 Score: 514.998 bits (1325), Expect = 6.004e-170 Identity = 255/333 (76.58%), Postives = 287/333 (86.19%), Query Frame = -2 Query: 338 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIP-DDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYAD 1333 I D YF+TLQ+ L PYDCVLYEMVASRESLENRRNP A K+ K S SRGFNI+G IQRQMA++L L+FQLDCLDY++ NWYHADLD+ETFKLLQ EKGESFFTFARDMTLKSTKA+V P + P +DL PWRSKLLWASRV+PMPLVGLLII VCAD G S YPELEALSRLDFG AMKVFLAKRLTSEF+ VTADVEEKSVIIGERNRAATEAL +A++ G NKIAILYGGGHMPDLGRRLRE+FDLVPS+V WITAWSI ++L S S P LK +A+V GWPLNRYQTLALLIFSSVLA+DLWFWELF T+V+W+S + S++ Q+ D Sbjct: 106 IADKEYFDTLQEVLEPYDCVLYEMVASRESLENRRNPEATKKPKGSSSRGFNIIGFIQRQMAKLLTLDFQLDCLDYESKNWYHADLDFETFKLLQQEKGESFFTFARDMTLKSTKAMVMPTTPPREDLGPWRSKLLWASRVVPMPLVGLLIIGSVCADVGGD-SEYPELEALSRLDFGGAMKVFLAKRLTSEFSMVTADVEEKSVIIGERNRAATEALHQAIDSGKNKIAILYGGGHMPDLGRRLREDFDLVPSQVQWITAWSIRDKNLSSRSFPVLKRLAQVFGWPLNRYQTLALLIFSSVLAVDLWFWELFFDTSVSWVSNVGSDLLQFFD 437
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: W1NSC2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00109p00030850 PE=4 SV=1) HSP 1 Score: 503.442 bits (1295), Expect = 3.172e-165 Identity = 250/335 (74.63%), Postives = 286/335 (85.37%), Query Frame = -2 Query: 344 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNP---XXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSN--SLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQY 1333 I D YF TLQKEL YD VLYEMVASRE+LE+RRN ++ +LK SRSRGFNILGCIQRQMAR L L+FQLDCLDYQ D WYHADLD+ETFKLLQLE+GESFFTFARDMT++STKA+VQPA++P++L PWRSKLLWASRVLPMPLVGLLII VCA ++ YPE +ALSRLDFGAAMKVFLAKRLT+EFTQ TA+VEEKSVIIG+RNR A EAL+RA++DG KIA+LYGGGHMPD+GRRLRE+FDL PS V WITAWSI QD+QS SLPFLK +AE+SGWPLNRYQTLALLIFSSVLA+DLWFWELF + VNW ++ ASE+ + Sbjct: 127 IADKEYFATLQKELETYDRVLYEMVASRENLESRRNARDLKSSTKLKGSRSRGFNILGCIQRQMARALALDFQLDCLDYQGDKWYHADLDFETFKLLQLERGESFFTFARDMTIRSTKAIVQPATVPEELGPWRSKLLWASRVLPMPLVGLLIIGSVCAPADKPSTEYPEWKALSRLDFGAAMKVFLAKRLTTEFTQATAEVEEKSVIIGDRNRVALEALQRAIDDGCQKIAVLYGGGHMPDMGRRLREDFDLAPSHVSWITAWSIGNQDVQSKNQSLPFLKALAEISGWPLNRYQTLALLIFSSVLAIDLWFWELFFSSLVNWAAQAASEIPHF 461
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: A0A087G8J6_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G215400 PE=4 SV=1) HSP 1 Score: 503.056 bits (1294), Expect = 4.599e-165 Identity = 248/338 (73.37%), Postives = 288/338 (85.21%), Query Frame = -2 Query: 323 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQ-DLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYADKARVM 1333 I D YF+TLQKEL PYD +LYEMVAS+E LENRRNP AAKRLKSSR RGF+ILG IQRQMAR L L+FQLDC+DY+A+NWYHADLDY+TF+LLQ+EKGESFF+FA+DMT++STKA++QPAS + LDP RSKL W SRV PMPLVGL +I CAD +Q S+YPELEALSRLDFGAAMKVFLAKRLTSE TQVT+D+EEKSVIIGERNRAATEALR+A+ GHN+IAILYGGGHMPDLGRRLREEFDLVPS V W+TAWSI DL++ S P L+ MAEV WPLNRYQTLALLIFSSVLALDL FWELF + ++W S+I +E+ + D A+++ Sbjct: 123 IADKEYFDTLQKELEPYDSILYEMVASKEVLENRRNPIAAKRLKSSRPRGFSILGFIQRQMARTLTLDFQLDCMDYEAENWYHADLDYDTFRLLQIEKGESFFSFAKDMTIRSTKAIMQPASTTEGLDPLRSKLRWVSRVFPMPLVGLFLIGAFCADFETQTSDYPELEALSRLDFGAAMKVFLAKRLTSELTQVTSDIEEKSVIIGERNRAATEALRKAIEQGHNRIAILYGGGHMPDLGRRLREEFDLVPSEVRWVTAWSIRNPLDLETTSFPILRRMAEVLRWPLNRYQTLALLIFSSVLALDLCFWELFFDSTIDWASQIGAELYRIVDNAKIV 460
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: I3T6N1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 498.434 bits (1282), Expect = 1.971e-163 Identity = 244/331 (73.72%), Postives = 281/331 (84.89%), Query Frame = -2 Query: 341 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYA 1333 I D YF LQKEL YDCVLYEMVAS+++LE RNP A KRLK S++RGFNI+GCIQRQMA+IL L+FQLDCL+YQ++NW HADLDYETF+LLQ KGES F+FA+D TL+STKA++QP SIP+DLDPWRSKLLWASRVLPMPLVGL +I VCA+ GS AS YPE+EALSRLD AAMK+FLAK LTS+ TQ TADVEEKSVIIGERNR A E LRRA++ G NKIAILYGGGHMPDLGRRLREEFDLVP V W+TAWSI K+ L ++SLPFLK MA SGWPLNRYQTLALLIFSS+LA+DLWFWELF GT V W+S++ +E+ +Y Sbjct: 120 IADEEYFLALQKELESYDCVLYEMVASKKTLEKMRNPKAKKRLKRSQTRGFNIIGCIQRQMAQILKLDFQLDCLNYQSENWQHADLDYETFQLLQEAKGESLFSFAKDTTLRSTKAMLQP-SIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKLFLAKSLTSDLTQNTADVEEKSVIIGERNRVAIENLRRAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPYGVEWVTAWSIRKRKLDTSSLPFLKTMARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTMVTWVSDVTTEILRYV 449 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092932 ID=g.barbadense_cottongen_reftransV1_0092932; Name=g.barbadense_cottongen_reftransV1_0092932; organism=Gossypium barbadense; type=contig; length=2813bpback to top |