g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092931
Unique Nameg.barbadense_cottongen_reftransV1_0092931
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt08chromosomeg.barbadense_cottongen_reftransV1_0092931:1..2262 .
Dt08:37952556..37955215 +
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = -1 
Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815
            LR   V++TGA+SG+G  TA+ LA+ G   +++  R+   AE A   +    P+    VM LDL+SL SVR FV        P+++L+ NA  +   A E   S +G E++ ATN+LGHF
Sbjct:   86 LRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSV--GMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHF 203
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 48/121 (39.67%), Postives = 75/121 (61.98%), Query Frame = -1 
Query: 1468 LRSITVIITGATSGIGAETARVLAKRG-ARLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815
            LR  T +ITGA+SG+G  TA+ LA+ G   +V+  R+ LKA+  AKA   +   +    ++ LDL+SL SVR FV+ +  L +PV++++ NA  +   A + + + DG EM+   N+LGHF
Sbjct:   83 LRKGTAVITGASSGLGLATAKALAETGRWHVVMGCRDFLKASRAAKA---AGMEKGSYTIVHLDLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLGHF 200
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.763e-15
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = -1 
Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815
            LR  +VIITGA+SG+G  TA+ LA+ G   +++  R+ LKA   AK+   +  P+    +M LDL+SL SVR FV        P+++L+ NA  +   A E   + DG E++  TN+LGHF
Sbjct:   83 LRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKS---AGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHF 200
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=por PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.807e-15
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = -1 
Query: 1468 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1803
            TVIITGA+SG+G   A+ L  +G  +++  RNL   ++    +   FP+    ++ LDL  L SVR FV++   L  P+  L+ NA  +     E   S D  E++ ATN+LGHF
Sbjct:    8 TVIITGASSGVGLYGAKALIDKGWHVIMACRNLDKTQKVADEL--GFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATNHLGHF 120
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_LEPBY (Light-dependent protochlorophyllide reductase OS=Leptolyngbya boryana GN=por PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.113e-15
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = -1 
Query: 1468 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFA---HEHAISEDGIEMTFATNYLGHF 1803
            TV+ITGA+SG+G   A+ L KRG  +V+  RNL+ A+ A A+ +   P+S   +M +DL SL SVR FV++       ++ L+ NA  +     E   S +G E++ ATN+ GHF
Sbjct:    8 TVVITGASSGVGLYAAKALVKRGWHVVMACRNLEKADSA-AKSLGMSPDS-YTLMHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVYMPLLKEPMRSPEGYELSVATNHFGHF 120
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M1AWI9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012251 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 7.150e-91
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = -1 
Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL+GS G SG+GSKSTAE VTE  PDLRS+T IITGATSGIGAETARV+AKRG +L+LPAR++KAAEE KARI+SE PE+EIIVMALDLSSL+SVR FV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL  M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+  I++ K
Sbjct:    1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVMAKRGVKLILPARSVKAAEETKARILSEVPEAEIIVMALDLSSLSSVRKFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANKTGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197

HSP 2 Score: 110.923 bits (276), Expect = 3.656e-26
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -2 
Query:  999 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1169
            SQYDATRAYALSKLANVLHTKELAQ LK++ ANVTVNCVHPGIVRTRLTREREGL+T
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQILKKMGANVTVNCVHPGIVRTRLTREREGLVT 254

HSP 3 Score: 37.3502 bits (85), Expect = 3.656e-26
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = -1 
Query:  853 DLVFFLASKLLKTIPQVN 906
            DLVFFL SKLLKTIPQV+
Sbjct:  255 DLVFFLTSKLLKTIPQVS 272
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: K4CPT3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g082870.2 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.305e-90
Identity = 153/197 (77.66%), Postives = 176/197 (89.34%), Query Frame = -1 
Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL+GS G SG+GSKSTAE VTE  PDLRS+T IITGATSGIGAETARVLAKRG +L+LPAR++KAAEE K RI+SE PE+EIIVMALDLSSL+SVRNFV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL  M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+  I++ K
Sbjct:    1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVLAKRGVKLILPARSVKAAEETKTRILSEVPEAEIIVMALDLSSLSSVRNFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANETGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197

HSP 2 Score: 108.227 bits (269), Expect = 7.388e-51
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -3 
Query:  569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763
            QAAATTCYVATHPRL N+SGKYFADCNE  +SKLGSNS EAA++W+ASEIMV+K++ A  DPL A
Sbjct:  270 QAAATTCYVATHPRLANVSGKYFADCNEVCSSKLGSNSTEAARIWSASEIMVAKNSNANLDPLEA 334

HSP 3 Score: 107.457 bits (267), Expect = 7.388e-51
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = -2 
Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELA+ LK+  ANVTVNCVHPGIVRTRLTREREGL+T +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELARVLKKTGANVTVNCVHPGIVRTRLTREREGLVTDL 256

HSP 4 Score: 35.8094 bits (81), Expect = 7.388e-51
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 
Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFL SKLLKTIPQ
Sbjct:  255 DLVFFLTSKLLKTIPQ 270
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: V7CPT2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G301600g PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.581e-90
Identity = 155/197 (78.68%), Postives = 177/197 (89.85%), Query Frame = -1 
Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            M++TLKYL+GS G SGFGSKSTAE+VTE   DLRS T IITGATSGIGAETARVLAKRG RL+LPAR++KAAE+AKARIVSE P+SEIIVMALDLSSL SVR+FV++  SL LP+++LINNAGKFAHEHA+SEDG+EMTFATNYLGHFLLTKLL+ TM +TAK+TGV GRIVNVSSSIHGWFSGD I Y+  ISR+K
Sbjct:    1 MIDTLKYLLGSAGPSGFGSKSTAEQVTENRADLRSFTAIITGATSGIGAETARVLAKRGVRLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFNSLGLPLHLLINNAGKFAHEHALSEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNK 197

HSP 2 Score: 107.842 bits (268), Expect = 1.000e-50
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = -2 
Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            S YDATRAYALSKLANV HTKELA+RL+Q+ ANVTVNCVHPGIVRTRLTREREGL+T +
Sbjct:  198 SHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDL 256

HSP 3 Score: 105.916 bits (263), Expect = 1.000e-50
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3 
Query:  569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763
            QAAATTCYVATHPRL ++SGKYFADCNE  TSKLGSNS EA++LWA SE M+S+  KA FD L A
Sbjct:  270 QAAATTCYVATHPRLFDVSGKYFADCNETSTSKLGSNSTEASRLWATSEFMISRGPKAAFDLLKA 334

HSP 4 Score: 36.965 bits (84), Expect = 1.000e-50
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 
Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKTIPQ
Sbjct:  255 DLVFFLASKLLKTIPQ 270
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M1AWI8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012251 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.734e-90
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = -1 
Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL+GS G SG+GSKSTAE VTE  PDLRS+T IITGATSGIGAETARV+AKRG +L+LPAR++KAAEE KARI+SE PE+EIIVMALDLSSL+SVR FV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL  M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+  I++ K
Sbjct:    1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVMAKRGVKLILPARSVKAAEETKARILSEVPEAEIIVMALDLSSLSSVRKFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANKTGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197

HSP 2 Score: 110.153 bits (274), Expect = 1.376e-51
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = -2 
Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELAQ LK++ ANVTVNCVHPGIVRTRLTREREGL+T +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQILKKMGANVTVNCVHPGIVRTRLTREREGLVTDL 256

HSP 3 Score: 108.227 bits (269), Expect = 1.376e-51
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -3 
Query:  569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763
            QAAATTCYVATHPRL N+SGKYFADCNE  +SKLGSNS EAA++W+ASEIMV+K++ A  DPL A
Sbjct:  270 QAAATTCYVATHPRLANVSGKYFADCNEVCSSKLGSNSTEAARIWSASEIMVAKNSNANLDPLDA 334

HSP 4 Score: 35.8094 bits (81), Expect = 1.376e-51
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 
Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFL SKLLKTIPQ
Sbjct:  255 DLVFFLTSKLLKTIPQ 270
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: V4MEM7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025670mg PE=4 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.789e-89
Identity = 153/197 (77.66%), Postives = 176/197 (89.34%), Query Frame = -1 
Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            M+ET KYLIG+ G SGFGSKSTA+EVTE C DLRS T IITGATSGIGAETARVLAKRGARL+ PARN+KAAEEAK +IVSEFPE+EI+VM LDLSS++SVR+FVS+ ESL+LP+N+LINNAGK AHEHAISEDGIEMTFATNYLGHFLLT LLL  M++TA++TGV GRIVNV+S IHGWFSGD+I Y+  IS+ K
Sbjct:    1 MIETGKYLIGAAGASGFGSKSTADEVTENC-DLRSTTAIITGATSGIGAETARVLAKRGARLIFPARNVKAAEEAKGKIVSEFPETEIVVMELDLSSISSVRSFVSDFESLDLPLNLLINNAGKLAHEHAISEDGIEMTFATNYLGHFLLTSLLLKKMIQTAEETGVQGRIVNVTSGIHGWFSGDLIGYLRLISQPK 196

HSP 2 Score: 102.834 bits (255), Expect = 6.427e-47
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = -2 
Query:  999 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1166
            Q+DATRAYALSKLANVLHTKEL+ RL+++ ANVTVNCVHPG+V+TRLTR+REGL+T
Sbjct:  198 QFDATRAYALSKLANVLHTKELSSRLQKIGANVTVNCVHPGVVKTRLTRDREGLLT 253

HSP 3 Score: 98.9821 bits (245), Expect = 6.427e-47
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = -3 
Query:  572 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVS-KHAKAVFDPLS 763
            QAAATTCYVAT+ RL+N+SGKYF DCNE   S LGSNS+EA KLWAASEI+V+ +H+KA FDP S
Sbjct:  269 QAAATTCYVATNSRLVNVSGKYFTDCNETTPSGLGSNSSEATKLWAASEILVTQQHSKAGFDPFS 333

HSP 4 Score: 36.5798 bits (83), Expect = 6.427e-47
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 
Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKT+PQ
Sbjct:  254 DLVFFLASKLLKTVPQ 269
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
PORB_ARATH1.063e-1539.17Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORB_ORYSJ2.737e-1539.67Protochlorophyllide reductase B, chloroplastic OS=... [more]
POR_DAUCA2.763e-1540.50Protochlorophyllide reductase, chloroplastic OS=Da... [more]
POR_SYNY33.807e-1537.39Light-dependent protochlorophyllide reductase OS=S... [more]
POR_LEPBY8.113e-1540.00Light-dependent protochlorophyllide reductase OS=L... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M1AWI9_SOLTU7.150e-9177.16Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4CPT3_SOLLC1.305e-9077.66Uncharacterized protein OS=Solanum lycopersicum GN... [more]
V7CPT2_PHAVU3.581e-9078.68Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
M1AWI8_SOLTU3.734e-9077.16Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
V4MEM7_EUTSA1.789e-8977.66Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 37..54
score: 43.09
coord: 113..124
score: 43.53
coord: 163..179
score: 28.87
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 37..177
e-value: 9.0E-29
score: 100.2
IPR016040NAD(P)-binding domainGENE3D3.40.50.720coord: 31..180
e-value: 1.4E-42
score: 145.2
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 31..185
NoneNo IPR availablePANTHERPTHR24320FAMILY NOT NAMEDcoord: 13..179
NoneNo IPR availablePANTHERPTHR24320:SF100SUBFAMILY NOT NAMEDcoord: 13..179

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bp
GCCCACTTATTCTCTTCTCTCCCTTTCTTCATTTTTTTTATTGCATATTC
TTCCTAAAGAAACCCATGAACATGTACCTTATATCTATTAATATTCATCC
TGATTAGGGTTTCCAAGTACTTCCACGATTCCAAGCAAAACCCCATCAGC
TCATTAACATATATATCCATCCGCCATAATCATTTTACAATTATCACTGG
ATCCCTTTCTTTATAATCCGTCTTTAAAAAATTAGTATGGGGGTATTATA
GGGCAATATATATGCAAATTATATAATACCAGTACTAATAATAATGGATA
GAAACAGTTTTATAAGTACAAAACCCTCTTCTTTTCCAGTACTAGGTAAG
CTTCTTAACATGTACCGAACCAACATAGCTATAATTTAAGGTGCATAATA
CTTGTATATCTAATTGTCTTTTAACTGATGTATACATATACACTATATTC
CTATCATCTTTTCTCTTCCAACTAAGATATTTCATATCTTTTGCTGTTTC
TGTTTCTAATTTCTAGTCTTCTTTTTTTTTTCATCTCTTTATTTTTATTA
CATATGGTGATAATCGAAGGCACTAAGCGGATCAAACACTGCTTTAGCGT
GTTTGGAAACCATGATTTCAGAGGCAGCCCAAAGCTTTGCAGCTTCGTTG
GAATTCGACCCCAGTTTGGATGTCCATGCTTCGTTGCAGTCTGCAAAGTA
TTTCCCACTTATATTTAGCAGTCTTGGATGCGTGGCGACGTAACAAGTCG
TGGCAGCTGCCTGTACCCTCGACAAATGAAAGTCCATTGTCCATCAAAAC
CACCCACTTCAACTCTCATTAATCAAAAGCTTTAATTACTTAAGATATAT
TAGTTTACCTGAGGAATGGTTTTCAGGAGCTTGGAAGCCAAAAAGAAAAC
CAGATCTGCAGGTTAATATATATTAGATTTTAACCAGAGAGAGTTGAAAG
TTGAAAACATTAAATAAAATCAAATGGCATCTTCTATATGTATATACCTG
TTATCAAGCCCTCACGTTCCCTGGTGAGACGGGTTCTAACAATACCTGGA
TGAACACAGTTCACAGTCACGTTGGCATCCACTTGCTTCAGTCTCTGGGC
AAGCTCCTTGGTATGCAAAACGTTAGCGAGCTTCGAGAGAGCATAAGCAC
GTGTCGCATCGTATTGACTGGGAACAGACAGCCAGACAAAAAACAGACAC
ATGAATTAAAAATCGATAGGAAATGTCAAATCCAAAAGAAAAGAAACCCA
ATCTTCTGTAACAATCATTTACTCCTATACTATGTTCGATTCTGTCACTG
TTATTTATCATTCTTCACCTTTTGCTTCTGGATATCTGGCCTATATATCG
GATCATATCGCCAGAAAACCATCCATGGATACTCGACGACACATTCACTA
TTCTTCCTGGAACACCTGTTTGTTTAGCCGTCTTCATCATCGTGTTTAGC
AACAACTTCGTCAACAAAAAATGACCAAGATAATTAGTGGCAAATGTCAT
CTCGATTCCATCCTCGGAGATTGCATGTTCATGCGCAAACTTCCCGGCAT
TGTTTATGAGGATATTGACTGGCAAGTTAAGAGACTCCAACTCCGATACA
AAATTTCGAACAGAAGTGAGTGAACTAAGATCAAGAGCCATGACAATAAT
TTCTGATTCAGGAAACTCGGAAACTATCCTAGCCTTTGCTTCCTCAGCGG
CTTTAAGGTTCCGAGCTGGAAGCACCAACCTCGCTCCTCGTTTGGCCAAC
ACTCTGGCCGTCTCAGCTCCGATCCCCGACGTCGCACCTGTGATGATGAC
TGTTATAGAGCGGAGATCAGGGCAAGTCTCGGTGACTTCCTCGGCGGTGG
ACTTAGAGCCGAAGCCGCTGACTCCTGTTGAGCCGATCAGGTACTTCAGA
GTCTCTAGCATTTCAACTTCCTTTTTTTTCTTTTAGATATGATACAATTT
TTGAGAGTTTAAAGTTGGGTGAAGAACACACAAAATGACGTAAAAATCAT
TTAAGAAAAACAAACAGCAATAAAGGGGTTTGTTTACTCTTGTGGGATTT
AAGGTTTACTATAGAAAGAAAAGATTATCAGAAATGAAAGTTTTAGGGGA
AAGGAGCTAAAAGCTAATCTGTTTCAAGGACAAAAGAGAAAGTGGGATCG
GATTTTATAATGGAGCTAGCTTTGGTGGGGGAGAATCCAATTGAGAGAAC
GAGAGAGAGAGAGAATGGATTATATGTTTGTCATTTGATTGATTATATTT
AACGAAAATTAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom