g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.284e-20 Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = -1 Query: 1369 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPES----------EIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGW 1803 TV+ITGA SG+G TA L + GAR+++ R+ AEEA ++ E ++ +++V LDL+SL SVR F EL +++LINNAG F + +EDG EM F N+LGHFLLT LLL + +A P RIV VSS ++ + Sbjct: 46 TVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSA-----PSRIVVVSSKLYKY 195 HSP 2 Score: 56.6102 bits (135), Expect = 3.302e-7 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = -2 Query: 1020 FVWLSVPSQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1190 F L+ Y+ + Y+ SKLAN+L T+ELA+RL+ NVTVN +HPGIVRT L R Sbjct: 200 FEDLNSEQSYNKSFCYSRSKLANILFTRELARRLE--GTNVTVNVLHPGIVRTNLGR 254
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.421e-20 Identity = 65/163 (39.88%), Postives = 91/163 (55.83%), Query Frame = -1 Query: 1354 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEF-------PE------SEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDM 1803 TV+ITGA SG+G TA L + GAR+++ R+ AEEA ++ E PE E+IV LDL+SL SVR F E+ +++LINNAG F + +EDG EM F N+LGHF LL ++ ++ P RIV VSS ++ + GD+ Sbjct: 45 TVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHF-----LLTNLLLGLLKSSAPSRIVVVSSKLYKY--GDI 200 HSP 2 Score: 56.225 bits (134), Expect = 4.538e-7 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = -2 Query: 1020 LSVPSQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1181 L+ Y+ + Y+ SKLAN+L T+ELA+RL+ NVTVN +HPGIVRT L R Sbjct: 205 LNSEQSYNKSFCYSRSKLANILFTRELARRLE--GTNVTVNVLHPGIVRTNLGR 256
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.946e-20 Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = -1 Query: 1375 KSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1854 K A V T L V+ITGA +GIG ETAR LA+RGAR+ + R++ E A + I ++ S+++V LDLS S+R F + ++ILINNAG ++ + DG E A N+LGHFLLT LLL + ++A P R+VN+SS H Sbjct: 24 KFFAGGVCRTDVQLFGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESA-----PARVVNLSSVAH 178
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.267e-19 Identity = 60/134 (44.78%), Postives = 75/134 (55.97%), Query Frame = -1 Query: 1468 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFP--ESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHF 1863 F S STA +V DL T +ITGA GIG ETAR LA G ++ RN +AE A RI E P S ALDLSSL SV+ FV E++ ++ LI NAG FA + + DG+E TF ++L HF Sbjct: 104 FDSCSTALQVLHG-KDLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHF 236
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 2.534e-19 Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = -1 Query: 1375 KSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1854 K A V T L V+ITGA +GIG ETAR LA RGAR+ + R++ E A + I + S+++V LDLS S+R F + ++ILINNAG ++ + DG E N+LGHFLLT LLL + +A P R+VNVSS H Sbjct: 24 KFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSA-----PARVVNVSSVAH 178
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 6.971e-19 Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -1 Query: 1375 IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPG---RIVNVSSSIH 1797 I+TG T GIG TA+ LA+ G +++ N A++ ++I E ++ + DL+S+TS+R FV + + +P+++LINNAG + DG E F NYLGHF LL N ++ T K++G PG R+V VSS+ H Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHF----LLTNLLLDTLKESGSPGHSARVVTVSSATH 186
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 9.966e-19 Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = -1 Query: 1375 VIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1800 V++TGA +GIG ETA+ LA+RGAR+ L R+++ E I + +++V LDLS S+R F + +++LINNAG ++ + DG EM N+LGHFLLT LLL + ++A P RIVNVSS H Sbjct: 44 VVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNVSSLAH 180
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 3.583e-18 Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = -1 Query: 1375 IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1797 I+TGA +GIG ETA+ LA+RGAR+ L R++ E A I + S++ V LDL+ S+R F + + +++LINNAG ++ + DG EM N+LGHFLLT LLL + ++A P RIVN+SS H Sbjct: 42 IVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNLSSLGH 177
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.363e-16 Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 LR V+ITGA+SG+G TA+ LA+ G +++ R+ LKAA AK+ + + +M LDL+SL SVR FV +P+++LINNA + A E + + DG E++ TN+LGHF Sbjct: 84 LRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKS---AGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHF 201
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.167e-16 Identity = 46/121 (38.02%), Postives = 75/121 (61.98%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 +R+ IITGA+SG+G TA+ LA+ G +++ R+ LK A A+A + P+ ++ LDL+SL SVR FV + L++P+++++ NA + A E + + DG EM+ N+LGHF Sbjct: 80 VRTGNAIITGASSGLGLATAKALAESGKWHVIMACRDYLKTARAARA---AGMPKGSYTIVHLDLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTAKEPSFTADGFEMSVGVNHLGHF 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M1AWI9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012251 PE=3 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 7.150e-91 Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL+GS G SG+GSKSTAE VTE PDLRS+T IITGATSGIGAETARV+AKRG +L+LPAR++KAAEE KARI+SE PE+EIIVMALDLSSL+SVR FV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+ I++ K Sbjct: 1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVMAKRGVKLILPARSVKAAEETKARILSEVPEAEIIVMALDLSSLSSVRKFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANKTGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197 HSP 2 Score: 110.923 bits (276), Expect = 3.656e-26 Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -2 Query: 999 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1169 SQYDATRAYALSKLANVLHTKELAQ LK++ ANVTVNCVHPGIVRTRLTREREGL+T Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQILKKMGANVTVNCVHPGIVRTRLTREREGLVT 254 HSP 3 Score: 37.3502 bits (85), Expect = 3.656e-26 Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = -1 Query: 853 DLVFFLASKLLKTIPQVN 906 DLVFFL SKLLKTIPQV+ Sbjct: 255 DLVFFLTSKLLKTIPQVS 272
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: K4CPT3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g082870.2 PE=3 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 1.305e-90 Identity = 153/197 (77.66%), Postives = 176/197 (89.34%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL+GS G SG+GSKSTAE VTE PDLRS+T IITGATSGIGAETARVLAKRG +L+LPAR++KAAEE K RI+SE PE+EIIVMALDLSSL+SVRNFV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+ I++ K Sbjct: 1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVLAKRGVKLILPARSVKAAEETKTRILSEVPEAEIIVMALDLSSLSSVRNFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANETGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197 HSP 2 Score: 108.227 bits (269), Expect = 7.388e-51 Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -3 Query: 569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763 QAAATTCYVATHPRL N+SGKYFADCNE +SKLGSNS EAA++W+ASEIMV+K++ A DPL A Sbjct: 270 QAAATTCYVATHPRLANVSGKYFADCNEVCSSKLGSNSTEAARIWSASEIMVAKNSNANLDPLEA 334 HSP 3 Score: 107.457 bits (267), Expect = 7.388e-51 Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELA+ LK+ ANVTVNCVHPGIVRTRLTREREGL+T + Sbjct: 198 SQYDATRAYALSKLANVLHTKELARVLKKTGANVTVNCVHPGIVRTRLTREREGLVTDL 256 HSP 4 Score: 35.8094 bits (81), Expect = 7.388e-51 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFL SKLLKTIPQ Sbjct: 255 DLVFFLTSKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: V7CPT2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G301600g PE=3 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 3.581e-90 Identity = 155/197 (78.68%), Postives = 177/197 (89.85%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 M++TLKYL+GS G SGFGSKSTAE+VTE DLRS T IITGATSGIGAETARVLAKRG RL+LPAR++KAAE+AKARIVSE P+SEIIVMALDLSSL SVR+FV++ SL LP+++LINNAGKFAHEHA+SEDG+EMTFATNYLGHFLLTKLL+ TM +TAK+TGV GRIVNVSSSIHGWFSGD I Y+ ISR+K Sbjct: 1 MIDTLKYLLGSAGPSGFGSKSTAEQVTENRADLRSFTAIITGATSGIGAETARVLAKRGVRLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFNSLGLPLHLLINNAGKFAHEHALSEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNK 197 HSP 2 Score: 107.842 bits (268), Expect = 1.000e-50 Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YDATRAYALSKLANV HTKELA+RL+Q+ ANVTVNCVHPGIVRTRLTREREGL+T + Sbjct: 198 SHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDL 256 HSP 3 Score: 105.916 bits (263), Expect = 1.000e-50 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3 Query: 569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763 QAAATTCYVATHPRL ++SGKYFADCNE TSKLGSNS EA++LWA SE M+S+ KA FD L A Sbjct: 270 QAAATTCYVATHPRLFDVSGKYFADCNETSTSKLGSNSTEASRLWATSEFMISRGPKAAFDLLKA 334 HSP 4 Score: 36.965 bits (84), Expect = 1.000e-50 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M1AWI8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012251 PE=3 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 3.734e-90 Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL+GS G SG+GSKSTAE VTE PDLRS+T IITGATSGIGAETARV+AKRG +L+LPAR++KAAEE KARI+SE PE+EIIVMALDLSSL+SVR FV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+ I++ K Sbjct: 1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVMAKRGVKLILPARSVKAAEETKARILSEVPEAEIIVMALDLSSLSSVRKFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANKTGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197 HSP 2 Score: 110.153 bits (274), Expect = 1.376e-51 Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQ LK++ ANVTVNCVHPGIVRTRLTREREGL+T + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQILKKMGANVTVNCVHPGIVRTRLTREREGLVTDL 256 HSP 3 Score: 108.227 bits (269), Expect = 1.376e-51 Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -3 Query: 569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763 QAAATTCYVATHPRL N+SGKYFADCNE +SKLGSNS EAA++W+ASEIMV+K++ A DPL A Sbjct: 270 QAAATTCYVATHPRLANVSGKYFADCNEVCSSKLGSNSTEAARIWSASEIMVAKNSNANLDPLDA 334 HSP 4 Score: 35.8094 bits (81), Expect = 1.376e-51 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFL SKLLKTIPQ Sbjct: 255 DLVFFLTSKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: V4MEM7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025670mg PE=4 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.789e-89 Identity = 153/197 (77.66%), Postives = 176/197 (89.34%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 M+ET KYLIG+ G SGFGSKSTA+EVTE C DLRS T IITGATSGIGAETARVLAKRGARL+ PARN+KAAEEAK +IVSEFPE+EI+VM LDLSS++SVR+FVS+ ESL+LP+N+LINNAGK AHEHAISEDGIEMTFATNYLGHFLLT LLL M++TA++TGV GRIVNV+S IHGWFSGD+I Y+ IS+ K Sbjct: 1 MIETGKYLIGAAGASGFGSKSTADEVTENC-DLRSTTAIITGATSGIGAETARVLAKRGARLIFPARNVKAAEEAKGKIVSEFPETEIVVMELDLSSISSVRSFVSDFESLDLPLNLLINNAGKLAHEHAISEDGIEMTFATNYLGHFLLTSLLLKKMIQTAEETGVQGRIVNVTSGIHGWFSGDLIGYLRLISQPK 196 HSP 2 Score: 102.834 bits (255), Expect = 6.427e-47 Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = -2 Query: 999 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1166 Q+DATRAYALSKLANVLHTKEL+ RL+++ ANVTVNCVHPG+V+TRLTR+REGL+T Sbjct: 198 QFDATRAYALSKLANVLHTKELSSRLQKIGANVTVNCVHPGVVKTRLTRDREGLLT 253 HSP 3 Score: 98.9821 bits (245), Expect = 6.427e-47 Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = -3 Query: 572 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVS-KHAKAVFDPLS 763 QAAATTCYVAT+ RL+N+SGKYF DCNE S LGSNS+EA KLWAASEI+V+ +H+KA FDP S Sbjct: 269 QAAATTCYVATNSRLVNVSGKYFTDCNETTPSGLGSNSSEATKLWAASEILVTQQHSKAGFDPFS 333 HSP 4 Score: 36.5798 bits (83), Expect = 6.427e-47 Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKT+PQ Sbjct: 254 DLVFFLASKLLKTVPQ 269 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bpback to top |