g.barbadense_cottongen_reftransV1_0092647, g.barbadense_cottongen_reftransV1_0092647 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092647
Unique Name	g.barbadense_cottongen_reftransV1_0092647
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3428

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMYD1_HUMAN (Histone-lysine N-methyltransferase SMYD1 OS=Homo sapiens GN=SMYD1 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.896e-9
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 3

Query: 1185 CNAHTICDSE-LRSLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQH------------IPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNK 1451
            CN  T+ D   L+++G G++P + ++NH C PN  ++F  G    V+++ H            I +  E+++SY++    +  R++ LK+QY F C C  C K
Sbjct:  179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQK 281

HSP 2 Score: 60.077 bits (144), Expect = 8.642e-8
Identity = 29/98 (29.59%), Postives = 49/98 (50.00%), Query Frame = 3

Query:  216 KGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKS-NLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKL 506
            KGR L A ++F+  ++I ++  Y  V  +SL    C  CF +   L +C  C    YC  +CQK  W  H+ EC  + +  K   +++    R+M ++
Sbjct:   17 KGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRV 114

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMYD1_MOUSE (Histone-lysine N-methyltransferase Smyd1 OS=Mus musculus GN=Smyd1 PE=1 SV=3)

HSP 1 Score: 63.929 bits (154), Expect = 5.025e-9
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 3

Query: 1185 CNAHTICDSE-LRSLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQH------------IPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNK 1451
            CN  T+ D   L+++G G++P + ++NH C PN  ++F  G    V+++ H            I +  E+++SY++    +  R++ LK+QY F C C  C K
Sbjct:  179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQK 281

HSP 2 Score: 63.929 bits (154), Expect = 5.432e-9
Identity = 39/141 (27.66%), Postives = 65/141 (46.10%), Query Frame = 3

Query:  204 TFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSN-LKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNEN-VIPVTAMDNYNLVEALVSHMSDIDEKQL 620
            T   KGR L A ++F+  +VI ++  Y  V  +SL    C  CF +   L +C  C    YC  +CQK  W  H+ EC  + K  K   +++    R+M ++        E  ++ V  + N+      V H  + ++K+L
Sbjct:   13 TSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNH------VEHFGEEEQKEL 147

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMYD4_PONAB (SET and MYND domain-containing protein 4 OS=Pongo abelii GN=SMYD4 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.515e-8
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 3

Query: 1176 QFACNA-------HT------ICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISY--VETAASTITRQKTLKEQYLFTCICVRC 1445
            Q  CNA       HT      + DS    L TG++PV+S++NHSC PN  + F   +A ++A Q I K  E+   Y   ++      RQ+ L+ QY F C C  C
Sbjct:  498 QLQCNAQAMTTIQHTGSKGSIVTDSRQVRLATGIFPVVSLLNHSCSPNTSMSFISTVATIQASQRIRKGQEILHCYGPHKSRMGVAERQQELRSQYFFDCACPAC 602

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: Y2140_DICDI (SET and MYND domain-containing protein DDB_G0292140 OS=Dictyostelium discoideum GN=DDB_G0292140 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.093e-8
Identity = 48/183 (26.23%), Postives = 80/183 (43.72%), Query Frame = 3

Query:  204 TFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKK---------CSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLR---RKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKVH 716
            + P  GR L+A +D     VI+   PY    +++  +S C  CF +  L +         C  C  V YC ++C+ +++  HR ECQ+  +LD E     +P +   +KL +R   RK   +++     +D           ++D   K+   Y Q  N  +LI Q   +   + AE  S V 
Sbjct:  128 SHPINGRYLVATKDLDEQTVILRDLPYTWAVDHATCDSVCQHCFLEVPLNQQILPTDFYMCEGCQRVGYCSANCRCIDYSQHRFECQIFKELDTEE---YSPFLMSEIKLLVRTLSRKWLEDSITQTAGID-----------INDETIKKQNTYNQYKNPQSLIPQDNGLRYNDYAELVSNVE 296

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: Y3591_DICDI (SET and MYND domain-containing protein DDB_G0273591 OS=Dictyostelium discoideum GN=DDB_G0273591 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.653e-8
Identity = 36/119 (30.25%), Postives = 56/119 (47.06%), Query Frame = 3

Query: 1185 CNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCN--KLGQYGDIQES--AILEGYRCRDNGCSGF 1529
            CN   I     + +G  + P  S  NHSC+PN   V +G     +++  I K  +++ISY+    ST  R+  LK  Y F C C RCN   +   G +++S    +  + C    C+G 
Sbjct:  251 CNQFGIWTKNDKCIGMAVSPSSSYFNHSCIPNCESVRDGSDMTFKSLFPIKKGDQINISYLALDKSTKRRRDYLKFGYYFHCQCPRCNSTDIDPTGKLEDSLDNWISKFYCHQKKCTGL 369

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: A0A067K971_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12048 PE=4 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 9.759e-91
Identity = 144/186 (77.42%), Postives = 162/186 (87.10%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKV 713
            M+ELQ +LQ  GLT+   P+KGR L   +DFYPGEVIISQEPYVCVPNNS TESRCDGCF+  NLKKCSAC VVWYCGS CQKLEWKLHRLEC++L+KLDK+RRKSVTP++R+MVKLYLRRKLQN   +  TA DNYNLVE LV+HM DIDEKQLLLYAQMANLVNLILQ P+I+IKEIAENFSK+
Sbjct:    1 MDELQEALQDWGLTVHNLPEKGRCLFTTKDFYPGEVIISQEPYVCVPNNSSTESRCDGCFTSVNLKKCSACQVVWYCGSKCQKLEWKLHRLECEVLSKLDKDRRKSVTPSVRLMVKLYLRRKLQNNKTLSATATDNYNLVEMLVAHMKDIDEKQLLLYAQMANLVNLILQWPDINIKEIAENFSKL 186

HSP 2 Score: 265.388 bits (677), Expect = 2.560e-74
Identity = 121/158 (76.58%), Postives = 140/158 (88.61%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKALK 1649
            + ACNAHTICDSELR LGTGLYPV+SIINHSCLPNAVLVFEGRLAVVRAVQHIPK +EV ISY+ETA ST+TRQK LK+QY FTC C RC K+GQ  D++ESAILEGYRC+D+ C GFLLR+SD+KGF CQQCGL R+KEE++KIA++I+A SDKA K
Sbjct:  185 KLACNAHTICDSELRPLGTGLYPVVSIINHSCLPNAVLVFEGRLAVVRAVQHIPKGAEVVISYIETAGSTMTRQKALKQQYFFTCTCSRCIKVGQQDDVRESAILEGYRCKDDRCIGFLLRDSDDKGFACQQCGLHRSKEEVKKIAAEIQATSDKASK 342

HSP 3 Score: 94.7449 bits (234), Expect = 7.038e-17
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1

Query: 2836 PLKESLYKWFDSFTQFWIKKTSIFINDRLLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRED 3078
            P+ +S+Y  F          +     + LLGET+DAI+S TKAVDILRITHGT++PFMKEL+MKLEEAR EAS+KLSS++D
Sbjct:  403 PVYQSVYPQFHPLLGLQYYTSGKL--EWLLGETEDAIRSLTKAVDILRITHGTNSPFMKELIMKLEEARAEASYKLSSKDD 481

HSP 4 Score: 81.6481 bits (200), Expect = 1.067e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E+W+EAL+ C+LTIPVY+ VYP FHPLLGLQYY+ GKLEWL
Sbjct:  389 EDWREALSYCKLTIPVYQSVYPQFHPLLGLQYYTSGKLEWL 429

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: E0CRB7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03730 PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.968e-87
Identity = 139/186 (74.73%), Postives = 165/186 (88.71%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKV 713
            ME+LQA L   GLT+ST P+KGR LL+ +DF PGEVIISQEPYV VPNNS   SRC+GCF  SNLKKCSACHVVWYCGS+CQK +WKLHRLEC  L++L+KER+KS+TP+IR+MVKLY+RRKLQ+E ++P TA DNYNLVEALVSH++DIDEKQL+LYAQMANLVNLILQ P+I++KEIAENFSK+
Sbjct:    1 MEDLQADLSANGLTVSTTPEKGRCLLSIKDFSPGEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLECNALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEKQLVLYAQMANLVNLILQWPDINVKEIAENFSKL 186

HSP 2 Score: 270.781 bits (691), Expect = 2.423e-76
Identity = 123/156 (78.85%), Postives = 140/156 (89.74%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            + ACNAHTICD ELR LGTGLYPVISIINHSCLPN+VLVFE RLAVVRAVQHIPK +EV ISY+ETA STITRQK LKEQYLFTC C RC ++GQY DIQESAILEGYRC+D+ C GFLLR+SD+ GF+CQQCGL+RNKEEI+++AS++K LSDKA
Sbjct:  185 KLACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEERLAVVRAVQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPRCRRMGQYDDIQESAILEGYRCKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASELKPLSDKA 340

HSP 3 Score: 88.1965 bits (217), Expect = 1.136e-14
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            ++W+ AL  C+LTIPVY+RVYPGFHPLLGLQYY+CGKLEWL
Sbjct:  388 KDWRAALTYCKLTIPVYQRVYPGFHPLLGLQYYTCGKLEWL 428

HSP 4 Score: 83.9593 bits (206), Expect = 1.952e-13
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 2920 LLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRE 3075
            LLGET+DA+KS TKA DIL+ITHGT+TPFMKELL KLEEAR EAS K SS++
Sbjct:  428 LLGETEDAVKSLTKAADILQITHGTNTPFMKELLFKLEEARAEASHKRSSKD 479

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: B9RJ97_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032380 PE=4 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 1.497e-85
Identity = 138/186 (74.19%), Postives = 163/186 (87.63%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKV 713
            MEELQA+LQ  GL ++   +KGRSL+  +DF PGEVIISQEPYVCVPNNS TESRCD CFS SN+KKCSAC V WYCGSSCQKLEWKLHR+EC+ L+KLDK+RRK VTP+IR+MV+L +RRKLQ+E +I  TA DNY+LVEALV+HM DIDEKQL+LYAQMANLVNLIL+ P+++IKEIAENFSK+
Sbjct:    1 MEELQAALQNWGLRVANVTEKGRSLVTTKDFNPGEVIISQEPYVCVPNNSATESRCDRCFSSSNVKKCSACQVAWYCGSSCQKLEWKLHRIECEALSKLDKDRRKYVTPSIRLMVRLLIRRKLQSEKIISSTATDNYDLVEALVAHMKDIDEKQLVLYAQMANLVNLILRWPDVNIKEIAENFSKL 186

HSP 2 Score: 263.462 bits (672), Expect = 1.061e-73
Identity = 120/158 (75.95%), Postives = 139/158 (87.97%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKALK 1649
            + ACNAHTICDSELR LGTGLYPV+SIINHSCLPNAVLVF+GRLAVV  VQHIPK SEV ISY+ETA ST+TRQK LK+QY FTC C RC K+G   DIQESAILEGYRC+DN C+GFLLR+SD++GF+CQQCGL+R+KEE++K A++IKA SDKA K
Sbjct:  185 KLACNAHTICDSELRPLGTGLYPVVSIINHSCLPNAVLVFDGRLAVVHTVQHIPKGSEVLISYIETAGSTMTRQKALKQQYFFTCTCPRCIKMGLLDDIQESAILEGYRCKDNRCNGFLLRDSDDRGFICQQCGLLRSKEEVKKSAAEIKATSDKASK 342

HSP 3 Score: 78.5666 bits (192), Expect = 1.178e-11
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E+W EAL+ C+LTIPVY+RVYP FHPLLGLQY+SCGKLEWL
Sbjct:  389 EDWGEALSYCKLTIPVYQRVYPEFHPLLGLQYFSCGKLEWL 429

HSP 4 Score: 77.7962 bits (190), Expect = 2.112e-11
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1

Query: 2920 LLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRE 3075
            LLG+T+ AIKS TKA+D+LRITHGT TPFMKEL+MKLEEAR E S+  +S +
Sbjct:  429 LLGDTEAAIKSLTKALDVLRITHGTKTPFMKELMMKLEEARAEVSYLRASND 480

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: M1BHD1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017559 PE=4 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.138e-85
Identity = 131/186 (70.43%), Postives = 163/186 (87.63%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKV 713
            MEEL+ +L  +GLT+S+ P+KGR L   RDF+PGEVIIS++PYV VPN S   ++C+ CF+ +NLK+CSAC VV YCG++CQKL+WKLHR+ECQ L+K+DKER KS+TP+IR+MVKLYLRRKLQ+E VIP+T MDNYNLVE+LVSHM+DIDEKQL+LYAQMANLV+LILQ P I++KEIAENFSKV
Sbjct:    1 MEELEEALSDKGLTVSSVPEKGRCLFTTRDFFPGEVIISEDPYVSVPNKS---AKCEWCFTSNNLKRCSACQVVCYCGNTCQKLDWKLHRVECQALSKVDKERVKSITPSIRLMVKLYLRRKLQDEKVIPITVMDNYNLVESLVSHMTDIDEKQLVLYAQMANLVSLILQWPEINVKEIAENFSKV 183

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: M5XD19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005026mg PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.557e-83
Identity = 138/186 (74.19%), Postives = 157/186 (84.41%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKV 713
            MEELQ +L+ R LT+S  P+KGR L   RDF PGEVIISQEPYV VPNNS  ESRCD CF  SNLKKCSAC VV+YC +SCQK EWKLHRLEC+ L+KL KERR +VTP+IR+M+KLYLR KLQ E VIP +AMDNY LVEALV+HMS+IDEKQL+LYAQMANLV+LILQ P I+IKEIAENFSK+
Sbjct:    1 MEELQRALEDRSLTVSNVPEKGRCLFTTRDFSPGEVIISQEPYVSVPNNSSAESRCDACFESSNLKKCSACQVVYYCSNSCQKSEWKLHRLECEALSKLHKERRMAVTPSIRLMIKLYLRTKLQTERVIPASAMDNYKLVEALVAHMSEIDEKQLVLYAQMANLVSLILQWPGINIKEIAENFSKL 186

HSP 2 Score: 272.322 bits (695), Expect = 9.309e-77
Identity = 122/156 (78.21%), Postives = 142/156 (91.03%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            + ACNAHTICDSELR LGTGLYPVISI+NHSCLPN+VL+FEGR AVV AVQHIPK +EV ISY+ETA ST+TRQK LKEQYLFTC C RC+K+G+Y DIQESA+LEGYRC+DNGC GFLLRESD  GF+CQQCGL+R+KEEI++IAS++K+LSDKA
Sbjct:  185 KLACNAHTICDSELRPLGTGLYPVISIVNHSCLPNSVLLFEGRSAVVHAVQHIPKGAEVLISYIETAGSTLTRQKALKEQYLFTCTCPRCSKVGKYNDIQESAVLEGYRCKDNGCIGFLLRESDGNGFICQQCGLVRSKEEIKQIASELKSLSDKA 340

HSP 3 Score: 82.0333 bits (201), Expect = 9.961e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E+W EALA CRLTIPVY+RVYPG HPLLGLQYY+CGKLEWL
Sbjct:  389 EDWSEALAYCRLTIPVYQRVYPGCHPLLGLQYYTCGKLEWL 429

HSP 4 Score: 80.8777 bits (198), Expect = 1.953e-12
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 2920 LLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRE 3075
            LLG+T++A+KS  KAVDIL+ITHGTSTPFMK+L ++LEEAR EAS+K SS E
Sbjct:  429 LLGDTENAVKSLIKAVDILQITHGTSTPFMKDLFVRLEEARAEASYKFSSEE 480

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: R0I272_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013566mg PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.344e-83
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            M +L+  LQ R L++   P+KGRSL   RDF PGEVI+SQ+PY+CVPNN+ +ESRCDGCF  +NLK+CS C VVWYCGSSCQK EWKLHR EC+ L++LDKE+RK VTPTIR+MVKLY++R LQNE V+P+T  DNY+LV+ALVSHMS+IDEKQ+LLYAQMANLVNLILQ P +D++EIAENFSK
Sbjct:    6 MADLEMFLQDRCLSVLNLPEKGRSLFTTRDFRPGEVILSQKPYICVPNNTSSESRCDGCFKTNNLKRCSGCQVVWYCGSSCQKSEWKLHRDECKALSRLDKEKRKFVTPTIRLMVKLYIKRNLQNEKVLPITTTDNYSLVDALVSHMSEIDEKQMLLYAQMANLVNLILQFPTVDLREIAENFSK 190

HSP 2 Score: 235.343 bits (599), Expect = 8.690e-64
Identity = 106/157 (67.52%), Postives = 135/157 (85.99%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKAL 1646
            +F+CNAHTICDSELR  G GL+P +SIINHSC PNA+LVFE ++AVVRA+ +I KDSE++ISY+ETA ST+TRQK+L+EQYLF C C RCN +G+  DI+ESAILEGYRC +  C+ FLLR+ +EKGFVCQ+C L+R+KEE++KIASDIK +S+KAL
Sbjct:  190 KFSCNAHTICDSELRPQGIGLFPFVSIINHSCSPNAILVFEDQMAVVRAMDNILKDSEITISYIETAGSTLTRQKSLREQYLFHCHCARCNNVGKPDDIEESAILEGYRCANEKCTDFLLRDPEEKGFVCQKCLLLRSKEEVKKIASDIKRVSEKAL 346

HSP 3 Score: 75.485 bits (184), Expect = 9.757e-11
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E W+EAL  CRL +PVY+RVYP  HPL+GLQ+Y+ GKLEWL
Sbjct:  394 ESWREALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWL 434

HSP 4 Score: 74.3294 bits (181), Expect = 2.153e-10
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 2920 LLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASF 3057
            LLGET +A+ S TKA DILRI+HGTSTPFMKEL  KLEEAR EAS+
Sbjct:  434 LLGETKEAVSSLTKAFDILRISHGTSTPFMKELSAKLEEARAEASY 479

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: D7LAC4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_319740 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.293e-82
Identity = 131/185 (70.81%), Postives = 156/185 (84.32%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            M +LQ  LQ R L++S  P KGRSL   RD  PGEVI+SQ+PY+CVPNN+  ESRCDGCF  +NLKKCS C VVWYCGS CQK EWKLHR EC+ L +L+KE+RK VTPTIR+MVKLY++R LQNE V+P+T+ DNY+LVEALVSHMS+IDEKQ+LLYAQMANLVNLILQ P++D++EIAENFSK
Sbjct:    1 MADLQRFLQDRCLSVSNLPHKGRSLFTTRDIRPGEVILSQKPYICVPNNTSLESRCDGCFKTNNLKKCSGCQVVWYCGSFCQKSEWKLHRHECKALTRLEKEKRKFVTPTIRLMVKLYIKRNLQNEKVLPITSTDNYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPSVDLREIAENFSK 185

HSP 2 Score: 234.187 bits (596), Expect = 2.609e-63
Identity = 104/156 (66.67%), Postives = 136/156 (87.18%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            +F+CNAH+ICDSELR  G GL+P++SIINHSC PNAVLVFE ++AVVRA+ +I KDSE++ISY+ETA ST+TRQK+LKEQYLF C C RC+ +G+  DI+ESAILEGYRC +  C+GFLLR+ +EKGFVCQ+C L+R+KEE++K+ASD+K +S+KA
Sbjct:  185 KFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNVGKPHDIEESAILEGYRCSNEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKA 340

HSP 3 Score: 77.0258 bits (188), Expect = 3.799e-11
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1

Query: 2914 DRLLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRE 3075
            + LLGET +A+ S  KA DILRI+HGTSTPFMKEL  KLEEAR EAS+KL+  E
Sbjct:  427 EWLLGETKEAVSSLIKAFDILRISHGTSTPFMKELSAKLEEARAEASYKLACIE 480

HSP 4 Score: 74.3294 bits (181), Expect = 2.322e-10
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E W+EAL  CRL +PVY+RVYP  HPL+GLQ+Y+ GKLEWL
Sbjct:  389 EIWREALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWL 429

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: M1BHD2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017559 PE=4 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.560e-80
Identity = 130/185 (70.27%), Postives = 162/185 (87.57%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            MEEL+ +L  +GLT+S+ P+KGR L   RDF+PGEVIIS++PYV VPN S   ++C+ CF+ +NLK+CSAC VV YCG++CQKL+WKLHR+ECQ L+K+DKER KS+TP+IR+MVKLYLRRKLQ+E VIP+T MDNYNLVE+LVSHM+DIDEKQL+LYAQMANLV+LILQ P I++KEIAENFSK
Sbjct:    1 MEELEEALSDKGLTVSSVPEKGRCLFTTRDFFPGEVIISEDPYVSVPNKS---AKCEWCFTSNNLKRCSACQVVCYCGNTCQKLDWKLHRVECQALSKVDKERVKSITPSIRLMVKLYLRRKLQDEKVIPITVMDNYNLVESLVSHMTDIDEKQLVLYAQMANLVSLILQWPEINVKEIAENFSK 182

HSP 2 Score: 253.832 bits (647), Expect = 2.342e-70
Identity = 112/156 (71.79%), Postives = 136/156 (87.18%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            +F+CNAHTICD+EL+ LGTGLYPV+SIINHSCLPN+VL+FEGR+AVVRAVQHIPK +EVSISY+E A +T TRQK LKEQYLF+C C+RC KLGQ  DIQESA+LEGY+C+D  CSGFLLR+S  KGF CQ CGL+R+KEEI+    +I++LS+KA
Sbjct:  182 KFSCNAHTICDAELKPLGTGLYPVVSIINHSCLPNSVLIFEGRMAVVRAVQHIPKGTEVSISYIEMAGTTATRQKALKEQYLFSCTCIRCIKLGQNDDIQESAVLEGYKCKDKKCSGFLLRDSGNKGFTCQLCGLVRDKEEIKNTVHEIQSLSEKA 337

HSP 3 Score: 76.2554 bits (186), Expect = 6.413e-11
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEW 2388
            ++WKEAL  CRLTIPVY+RVYP  HPLLGLQYY+CGKLEW
Sbjct:  386 QDWKEALKYCRLTIPVYQRVYPECHPLLGLQYYTCGKLEW 425

HSP 4 Score: 69.707 bits (169), Expect = 6.963e-9
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1

Query: 2923 LGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRED 3078
            LGET++A +S  KA ++LRITHGT+T FM+EL +KLEEAR E S+K SS+E+
Sbjct:  427 LGETEEAYRSLAKAAEVLRITHGTNTTFMEELFVKLEEARAELSYKSSSKEE 478

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: M4CD19_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra002100 PE=4 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.855e-80
Identity = 133/185 (71.89%), Postives = 152/185 (82.16%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            M  LQ+ L+ R LT+   PDKGRSL  +RDF PGEVI+ QEPYV VPNN+ +ESRCDGCF    LKKCS C VVWYCGSSCQK EWKLHR EC+ L +L+KE+R  VTPTIR+MVKL L+R LQNE VIP+T  DNY+LVEALVSHMS++DEKQL+LYAQMANLVNLILQ P ID+KEIAENFSK
Sbjct:    1 MANLQSFLRDRCLTVLNLPDKGRSLFTSRDFRPGEVILRQEPYVSVPNNNSSESRCDGCFKTDGLKKCSGCQVVWYCGSSCQKSEWKLHRHECKALCRLEKEKRMLVTPTIRLMVKLCLKRNLQNEKVIPITTTDNYSLVEALVSHMSELDEKQLMLYAQMANLVNLILQFPGIDLKEIAENFSK 185

HSP 2 Score: 235.343 bits (599), Expect = 1.004e-63
Identity = 105/157 (66.88%), Postives = 135/157 (85.99%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKAL 1646
            +F+CNAH+ICDSELR  G GL+P++SIINHSC PNAVLVFE ++AVVRA+++I KDSEV+ISY+ETA ST+TRQK+LKEQYLF C C RC+ +G+  DI+ESAILEGYRC +  C+GFLLR+ D+KGFVCQ C L+R+KEE++K+A D+K +S KAL
Sbjct:  185 KFSCNAHSICDSELRPEGIGLFPLVSIINHSCSPNAVLVFEEKMAVVRAMEYISKDSEVTISYIETAGSTLTRQKSLKEQYLFHCQCARCSNIGKPHDIEESAILEGYRCANEKCNGFLLRDPDDKGFVCQNCMLLRSKEEVKKLAGDVKTVSAKAL 341

HSP 3 Score: 75.0998 bits (183), Expect = 1.451e-10
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1

Query: 2914 DRLLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRED 3078
            + LLG+T++A+ S  KA DILRI+HGTSTPFMKEL  KL+EAR EAS+KL + +D
Sbjct:  427 EWLLGQTEEAVSSLIKAYDILRISHGTSTPFMKELSAKLDEARAEASYKLLALKD 481

HSP 4 Score: 73.559 bits (179), Expect = 3.980e-10
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E W+EAL  C+L +PVY+RVYP  HPL+GLQ+Y+ GKLEWL
Sbjct:  389 ESWREALDYCKLIVPVYQRVYPATHPLIGLQFYTQGKLEWL 429

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: A0A078HJV4_BRANA (BnaA07g02410D protein OS=Brassica napus GN=BnaA07g02410D PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.621e-80
Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            M  LQ+ L+ R LT+   PDKGRSL  +RDF PGEVI+ QEPYV VPNN+ +ESRCDGCF    LKKCS C VVWYCGSSCQK EWKLHR EC+ L +L+KE+R  VTPTIR+MVKL L+R LQNE VIP+T  D+Y+LVEALVSHMS++DEKQL+LYAQMANLVNLILQ P ID+KEIAENFSK
Sbjct:    1 MANLQSFLRDRCLTVLNLPDKGRSLFTSRDFRPGEVILRQEPYVSVPNNNSSESRCDGCFKTDGLKKCSGCQVVWYCGSSCQKSEWKLHRHECKALCRLEKEKRMLVTPTIRLMVKLCLKRNLQNEKVIPITTTDDYSLVEALVSHMSELDEKQLMLYAQMANLVNLILQFPGIDLKEIAENFSK 185

HSP 2 Score: 232.261 bits (591), Expect = 9.950e-63
Identity = 104/157 (66.24%), Postives = 134/157 (85.35%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKAL 1646
            +F+CNAH+ICDSELR  G GL+P++SIINHSC PNAVLVFE ++AVVRA+ +I +DSEV+ISY+ETA ST+TRQK+LKEQYLF C C RC+ +G+  DI+ESAILEGYRC +  C+GFLLR+ D+KGFVCQ C L+R+KEE++K+A D+K +S KAL
Sbjct:  185 KFSCNAHSICDSELRPEGIGLFPLVSIINHSCSPNAVLVFEEKMAVVRAMDNISEDSEVTISYIETAGSTLTRQKSLKEQYLFHCQCARCSNIGKPHDIEESAILEGYRCANEKCNGFLLRDPDDKGFVCQNCMLLRSKEEVKKLAGDVKTVSAKAL 341

HSP 3 Score: 75.0998 bits (183), Expect = 1.503e-10
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1

Query: 2920 LLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRED 3078
            LLG+T++A+ S  KA DILRI+HGTSTPFMKEL  KL+EAR EAS+KL + +D
Sbjct:  429 LLGQTEEAVSSLIKAYDILRISHGTSTPFMKELSAKLDEARAEASYKLLALKD 481

HSP 4 Score: 73.9442 bits (180), Expect = 3.649e-10
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E W+EAL  C+L +PVY+RVYP  HPL+GLQ+Y+ GKLEWL
Sbjct:  389 ESWREALDYCKLIVPVYQRVYPATHPLIGLQFYTQGKLEWL 429

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
SMYD1_HUMAN	4.896e-9	30.10	Histone-lysine N-methyltransferase SMYD1 OS=Homo s...	[more]
SMYD1_MOUSE	5.025e-9	30.10	Histone-lysine N-methyltransferase Smyd1 OS=Mus mu...	[more]
SMYD4_PONAB	1.515e-8	35.24	SET and MYND domain-containing protein 4 OS=Pongo ...	[more]
Y2140_DICDI	2.093e-8	26.23	SET and MYND domain-containing protein DDB_G029214...	[more]
Y3591_DICDI	2.653e-8	30.25	SET and MYND domain-containing protein DDB_G027359...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067K971_JATCU	9.759e-91	77.42	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
E0CRB7_VITVI	1.968e-87	74.73	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9RJ97_RICCO	1.497e-85	74.19	Putative uncharacterized protein OS=Ricinus commun...	[more]
M1BHD1_SOLTU	6.138e-85	70.43	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
M5XD19_PRUPE	2.557e-83	74.19	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
R0I272_9BRAS	4.344e-83	70.27	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
D7LAC4_ARALL	2.293e-82	70.81	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
M1BHD2_SOLTU	1.560e-80	70.27	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
M4CD19_BRARP	1.855e-80	71.89	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]
A0A078HJV4_BRANA	6.621e-80	71.35	BnaA07g02410D protein OS=Brassica napus GN=BnaA07g...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 58..95 e-value: 2.8E-9 score: 36.8
IPR002893	Zinc finger, MYND-type	PROSITE	PS01360	ZF_MYND_1	coord: 58..95
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 58..95 score: 11.603
None	No IPR available	PANTHER	PTHR12197	SET AND MYND DOMAIN CONTAINING	coord: 1..187
None	No IPR available	PANTHER	PTHR12197:SF165	HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1	coord: 1..187
None	No IPR available	SUPERFAMILY	82199	SET domain	coord: 13..65
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 53..100

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092647 ID=g.barbadense_cottongen_reftransV1_0092647; Name=g.barbadense_cottongen_reftransV1_0092647; organism=Gossypium barbadense; type=contig; length=3428bp
GTCGTTTTTATCCAAAATTACTTTTGAAGAGCAATGAGAGTGCCGTTTTA
ATTTTTTTTTTCTTGTTTACGAAAAGATCTGACGCCGAGGATTAGTCTTT
CATTAGTCTAAAGCAAAAACCTTCCAGAGCTTACTAGTTCTGGCTTTGCT
TGTTGATGGAGGAATTACAGGCTTCTCTTCAACCTCGAGGCTTAACCCTT
TCAACTTTCCCCGATAAAGGCCGTTCCCTCCTCGCTGCCAGGGATTTCTA
TCCAGGAGAAGTGATTATAAGCCAAGAGCCATACGTCTGCGTGCCCAACA
ACTCCTTAACCGAATCAAGGTGCGATGGATGTTTCAGCAAAAGCAATCTT
AAGAAATGCTCAGCTTGTCATGTTGTTTGGTATTGTGGGAGCTCATGTCA
GAAACTGGAATGGAAGTTGCATCGGCTCGAGTGTCAGTTACTCGCTAAGC
TTGACAAAGAAAGGAGAAAATCTGTTACGCCTACCATCCGAATGATGGTG
AAACTTTACCTTAGGAGAAAGTTGCAAAATGAGAATGTCATCCCTGTTAC
AGCTATGGACAATTACAATTTGGTGGAGGCTTTGGTTTCTCACATGTCGG
ATATTGATGAGAAGCAGCTATTGTTATATGCGCAGATGGCTAACCTTGTT
AACTTGATTCTTCAGCTCCCCAACATCGACATAAAGGAGATTGCTGAAAA
CTTTTCCAAGGTCCATATTGAACGGTTTTAAGCTTCTAATTCCTTAGTTT
ATCATTTGAGTCATAATTACTTGAAACATATTAAATTTAATATGTTTTCC
TTCCTCACTCACTCCAAGAAAGAAATTAATGAAGGTTATATCTAGGTACT
ATGTAAGCAGTCTTGCATTTCTTCCATGTGATCTTTTGCTATTTTATCAT
TAAATCTTAAATTTCAAATCAACAGGAAGAATGCAAGCTTCTGTTAGGAA
CTTATGGGTTGCTTAAAACATTATGCAGAAAAGGATCAAGGTTGTATAAG
TTATGTTTCAATTAGATGGATGTTCAATCCAAAAGTAAGATTGGCCTGAA
TAAGCAGTCCCGGAATTTATTACAGTGTAATTTCATGCCTCTTTTATTGT
AACAAAGTTAGGAATCTTAACAAGTTCTGTCTAAGCTGGATGAACATATG
TTCTTATTTATTATTATGAAAATGGCAGTTTGCATGTAATGCGCATACCA
TTTGTGACAGTGAACTGAGATCGCTTGGGACAGGACTGTATCCTGTTATT
TCTATTATCAACCACAGCTGCTTGCCAAATGCTGTCTTGGTATTTGAAGG
AAGGTTGGCTGTGGTACGTGCTGTACAACATATACCCAAAGATTCTGAGG
TATCAATCAGTTATGTAGAGACTGCTGCAAGTACAATTACTCGGCAAAAG
ACTCTCAAAGAACAGTACCTTTTCACTTGTATATGTGTTCGCTGTAACAA
ACTGGGTCAGTATGGTGATATCCAAGAAAGTGCAATTCTAGAAGGCTATC
GGTGCAGGGACAACGGATGCAGTGGCTTCTTGCTTAGAGAATCAGATGAA
AAAGGATTTGTTTGCCAACAATGTGGCCTCATTAGAAACAAGGAAGAGAT
AAGAAAGATTGCTAGTGATATCAAAGCATTGTCGGACAAGGCTCTTAAGT
GTAGTTCCTCGGGCAGTATCCTTCTCTTCTTTTCTTTGTTGACTAACTAG
GCATTATTGGTGGAAATTCAATTAAATATCATTGAATATAATCTCATTGG
TGAACTAATCTCATCTGGTAATAATTTAATTCACATTCATTGAAGGAAAG
GAATGAAAGTTGATTCTTAACCTGAACTTCAGATCTTCAGGAAGCCATTG
TTTTGTATAAAAATATTGAAAAGCTCCAGAAGGAAGTGTACCATCCTTTT
TCAATCATTTTGTTGAGAACTTGGGAAAAACTTCTTGAGGTACTTCCTTG
AGTCATGTTCACATTTCTGAGCAGAATGTAGCTTGAAGAAACATAGTTTA
AAGATGATTCAATTTCATATGATGTAGCAGTAGGATTCTTATTACTAATT
CAGCTTCACATCAGTGTATATTCTTGTCTTGTTACTTCCCAATCTGATGA
ATCGCTAGATCATGTCAGAAGCTAAACTGAAAGCTAACACCTCTTGTTTC
CTCTTCTATCAAACATCCCTTGGTAAAATAACATTGGTTTTATCGGCAAT
AACAATTGTGTTGATGTGTGATTTGATACAAATTGAATCAATTAATCCTG
CAGATATTAATGCAGCTGGAAGAATGGAAAGAAGCTTTGGCAATTTGCAG
ATTGACGATTCCGGTGTATGAAAGGGTTTATCCAGGATTTCATCCTTTGC
TTGGATTACAATACTACAGTTGTGGAAAGCTTGAATGGTTAGAGAAATAT
CTTGCCCTTGTTATTGACTTCATTCTCTGGTTTACTTCTTTCTTCCACTT
GTTCATCTTAGAAAATGTTAGTCATATCCAGCACCCTATAAGCTTTATAA
AATGAACTGAGGCCATCACTTTCTATGAAGTTGTCTCTCGGGACCTTGTA
GCAGCTAAAGTACACACTTTCGTCTGCTCAACATGAATGTGAAATGCACC
AAATTTTATGACTTAACATAGCTGTGTTCATCCAGGAATATAACCAAAAA
TTCAGAACTGCATCAGATTTATCGGATTATTACTTAATAAGAACTTCAGT
ATCTTTAGCAACTTTTCTTGAACCTGGCAAAGTTTATTCCAAGGTCCTTT
AGAGGCAAATATGCATTCTTTTAGTTGTAGCTGGTAGGTTTTGAGATCTT
TAACAGGTCAATGAGTGGGCATGATCTTAAAATAACCTCTCAAAGAATCC
CTTTACAAATGGTTTGATAGTTTTACTCAGTTTTGGATTAAAAAAACTTC
GATATTTATTAATGACAGGTTGCTAGGGGAGACAGATGATGCTATCAAGT
CGTTCACCAAGGCGGTTGACATACTGCGAATCACTCATGGGACAAGTACA
CCATTTATGAAAGAACTGTTGATGAAGTTGGAGGAAGCTCGTGTTGAAGC
GTCGTTCAAGCTCTCATCAAGAGAGGACTCATAAATTACGTTGTGAATGT
TATTGGCATTGTCTTCAATGTGAAGCTTACAGGCTTGCATCAAGGAATGA
CTCAATTGTGCTCTTCCATATCCGGAAGCCAAGAGCTTGGTTTCTCTCGG
GTTCATTGGAGATTTTTCAGCTTAAATGAGAAAAGGATTATGTATCGACT
GAAAAATATCAGTATTAGCTAATGTTGTAAGAATTGGATCGGACTGTGAT
TAAACGGTGGTCTAATTGGTGTATTACACTATATGAAACCACCCACTTAG
ATAAAGACCTGTTTTCGTCTTCTTCTTTTTTCATTTTTTATTTTAAAAAT
GATAAAATTTGAGTTTTCAATACGTTAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002893	Znf_MYND

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g.barbadense_cottongen_reftransV1_0092647, g.barbadense_cottongen_reftransV1_0092647 (contig) Gossypium barbadense

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