g.barbadense_cottongen_reftransV1_0092647, g.barbadense_cottongen_reftransV1_0092647 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092647
Unique Name	g.barbadense_cottongen_reftransV1_0092647
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3428

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMYD2_PIG (N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=SMYD2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.702e-16
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRC 1445
            Q  CN  TI D EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ I    EV  SY++    T  R   L++ Y FTC C  C
Sbjct:  178 QVNCNGFTIEDEELSHLGSXIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 267

HSP 2 Score: 69.707 bits (169), Expect = 6.207e-11
Identity = 49/169 (28.99%), Postives = 81/169 (47.93%), Query Frame = 3

Query:  189 GLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFS-KSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDID-EKQLLLYAQMANLVNLI---LQLPNID 680
            GL     P KGR L A + F  G+++ S   Y  V   +   + C+ CF+ K  L KC  C   +YC   CQK +W +H+LEC  +    +    S   T+R+  ++  ++K+  E     T  +    V+   SH+  +D EK+ L+ + +A L +     L+ P+ D
Sbjct:    8 GLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPS--ETVRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDSD 170

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMY2A_DANRE (N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.034e-15
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRC 1445
            Q  CN  TI D EL  LG+ L+P ++++NHSC PN ++ ++G +A VRAVQ I  + E+  SY++    T  R + LK+ Y F C C  C
Sbjct:  178 QVNCNGFTIEDEELSHLGSALFPDVALMNHSCSPNVIVTYKGTVAEVRAVQEINPEEEIFNSYIDLLYPTEDRIERLKDSYFFNCDCKEC 267

HSP 2 Score: 65.0846 bits (157), Expect = 1.732e-9
Identity = 39/137 (28.47%), Postives = 68/137 (49.64%), Query Frame = 3

Query:  210 PDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFS-KSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQ 617
            P KGR L A + F  G+++ +   Y  V   +    RC+ CF+ K  L KC  C   +YC   CQ+ +W +H+LEC  +    +    S   T+R++ ++ L++K Q E     T  +    +  L +H+  +D ++
Sbjct:   15 PGKGRGLKAIKHFKVGDLVFACPAYAYVLTVNERGGRCECCFTRKEGLSKCGKCKQAYYCNVECQRGDWPMHKLECSAMCAYGENWCPS--ETVRLVARIILKQKHQTER----TPSERVLTLRELEAHLDKLDNEK 145

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: MSTAA_DROME (Protein msta, isoform A OS=Drosophila melanogaster GN=msta PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 6.872e-15
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 3

Query: 1221 SLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLL 1535
            +L  GL+P+ +I+NH C PNA   FE GRLAVVRA + IPK  E++ +Y +     +TR   LK    F C CVRC     + + +    L    CR+ GC G ++
Sbjct:  238 TLLRGLFPLTAIMNHECTPNASHYFENGRLAVVRAARDIPKGGEITTTYTKILWGNLTRNIFLKMTKHFACDCVRC-----HDNTENGTYLSALFCREQGCRGLVI 338

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMY2B_DANRE (N-lysine methyltransferase SMYD2-B OS=Danio rerio GN=smyd2b PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.318e-14
Identity = 56/185 (30.27%), Postives = 88/185 (47.57%), Query Frame = 3

Query:  189 GLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFS-KSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDID-EKQLLLYAQMANLVNLI---LQLPNIDIKEIAENFSKVHIERF 728
            G+     P KGR L  +R +  GE++ S   Y  V +       C+ CF+ K  L KC  C   +YC ++CQK  W +H+LECQ +    +  R S   T+R++ ++  R K Q E       +    L+  + +H+ D+D EK+ +  A +A L       L  P  D + +   FS+VH   F
Sbjct:    9 GIEQFASPGKGRGLRVSRAYGVGELLFSCPAYSYVLSVGERGLICEQCFTRKKGLAKCGKCKKAFYCNANCQKKNWPMHKLECQAMCAFGENWRPS--ETVRLVARIIARLKAQKERSPSEILL----LLGEMEAHLEDMDNEKREMTEAHIAGLHQFYSKHLDFP--DHQALLTLFSQVHCNGF 185

HSP 2 Score: 78.5666 bits (192), Expect = 9.919e-14
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCN 1448
            Q  CN  T+ D EL +LG  ++P I+++NHSC PN ++ + G  A VRAV+ I    E+  SY++    T  R + L++ Y F+C C  C 
Sbjct:  179 QVHCNGFTVEDEELSNLGLAIFPDIALLNHSCSPNVIVTYRGINAEVRAVKDISPGQEIYTSYIDLLYPTADRLERLRDMYYFSCDCKECT 269

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: Y7331_DICDI (SET and MYND domain-containing protein DDB_G0277331 OS=Dictyostelium discoideum GN=DDB_G0277331 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.125e-11
Identity = 36/115 (31.30%), Postives = 64/115 (55.65%), Query Frame = 3

Query:  213 DKGRSLLAARDFYPGEVIISQEPYV-CVPNNSLTESRCDGCFSKS-------NLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKL--DKERRKSVTPTIRMMVKLYLRRKLQ 527
            +KG  + + R F  GE I+  EPYV  V  +++    CD C            LK+CS C +V+YC + CQ   WK+H+ EC++L+ +    +++   T +  M+++L+++R L+
Sbjct:   37 EKGMGIFSNRKFNKGEKIMKIEPYVWSVAKHAIV---CDECLKNKLDLEEGKTLKRCSNCKLVYYCSTDCQTKAWKIHKQECKILSTIPSTTDKKNINTKSTTMLLRLFIKRNLE 148

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMYD4_MOUSE (SET and MYND domain-containing protein 4 OS=Mus musculus GN=Smyd4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.681e-10
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3

Query: 1188 NAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISY--VETAASTITRQKTLKEQYLFTCICVRCN 1448
            N   I +S    L TG++PV+S++NHSC PN  + F G +A VRA Q I K  E+   Y   E+      RQ+ L  QY F C C  C+
Sbjct:  511 NESIITNSRQIRLATGIFPVVSLLNHSCRPNTSVSFTGTVATVRAAQRIAKGQEILHCYGPHESRMGVAERQQRLSSQYFFDCRCGACH 599

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: MSTAB_DROME (Protein msta, isoform B OS=Drosophila melanogaster GN=msta PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.882e-10
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 3

Query: 1233 GLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLL 1535
             L+P+  ++NH C PNA   FE G   VV A + IP  +E+++SY +   ST+ R+  L     F C CVRC    + G       L    CR+ GC G ++
Sbjct:  228 ALFPLAGLLNHQCTPNAAHHFENGETIVVCATERIPAGAEITMSYAKLLWSTLARKIFLGMTKHFICKCVRCQDPTENG-----TYLSALFCREQGCRGLVI 324

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: Y3589_DICDI (SET and MYND domain-containing protein DDB_G0273589 OS=Dictyostelium discoideum GN=DDB_G0273589 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.005e-9
Identity = 37/115 (32.17%), Postives = 54/115 (46.96%), Query Frame = 3

Query: 1185 CNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGF 1529
            CN   I     + +G  + P  S  NHSC+PN   V +G     +++  I K  +++ISY+E       R+  LK  Y F CIC RCN      D  ++ I + Y C    C+G 
Sbjct:  234 CNQFGIWTKNDKCIGVAVSPSSSYFNHSCIPNCTDVRDGSNMTFKSLYPIKKGDQLTISYIELDQPIQDRKDELKYGYYFDCICPRCNGDSNSIDSMDNWISKFY-CSQKKCTGL 347

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SET6_SCHPO (SET domain and MYND-type zinc finger protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set6 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.184e-9
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRC 1445
            + A NA  +  S   SLG  L  ++  +NHSC PN  ++F+G +  + + + I KD ++ ISY++       RQK L ++Y F+C C RC
Sbjct:  165 RLAVNAMNLVTSSFDSLGMCLDTILCRLNHSCDPNCQIIFDGAIVQLVSKRDIKKDEQLFISYIDIRLPKSIRQKQLLKKYFFSCYCPRC 254

HSP 2 Score: 60.8474 bits (146), Expect = 5.073e-8
Identity = 41/167 (24.55%), Postives = 83/167 (49.70%), Query Frame = 3

Query:  207 FPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFS-KSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTI-RMMVKLYLRRKL-----------QNENVIPVTAMDNYNLVEALVSHMSDIDEKQLL--LYAQMA-NLVNLI 659
             P+ G+  +A  +   G++II +   +   +++     C  C   K   ++C+AC ++ YC   CQK +W  H+LEC+    L   ++  + P++ R++++LYL  +            QNE     ++  +  L+ +  SH + I + +L   L+ ++A N +NL+
Sbjct:   11 LPEFGKGTVATDNIPIGKIIIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLECK---ALQASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEFQAVSSSWSDAELIASAASHYTQIYQAELFQKLFCRLAVNAMNLV 174

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Match: SMYD4_HUMAN (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 4.013e-9
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 3

Query: 1176 QFACNA-------HT------ICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISY--VETAASTITRQKTLKEQYLFTCICVRC 1445
            Q  CNA       HT      + DS    L TG++PVIS++NHSC PN  + F   +A +RA Q I K  E+   Y   ++      RQ+ L+ QY F C C  C
Sbjct:  498 QLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPAC 602

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: V4M3A4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10022664mg PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.734e-80
Identity = 131/185 (70.81%), Postives = 155/185 (83.78%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            M +LQ  L  R LT+   P KGRSL  ARDF PGEVI+SQEPY+CVPNN   ESRCDGCF  +NLKKCS C VVWYCGSSCQK EWKLHR EC  L++L+KE+R  VTPTIR+M+KLY++R LQN+ V+P+T  DNY+LVEA+VSHMS++DEKQL+LYAQMANLVNL+LQLP+ID+KEIAENFSK
Sbjct:    1 MADLQKFLGDRCLTVLNIPGKGRSLFTARDFRPGEVILSQEPYICVPNN---ESRCDGCFKTNNLKKCSGCQVVWYCGSSCQKSEWKLHRHECIALSRLEKEKRMLVTPTIRLMLKLYIKRNLQNDKVMPITTTDNYSLVEAMVSHMSELDEKQLMLYAQMANLVNLVLQLPSIDLKEIAENFSK 182

HSP 2 Score: 233.417 bits (594), Expect = 4.821e-63
Identity = 103/156 (66.03%), Postives = 135/156 (86.54%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            +F+CNAH+ICDSELR  G GL+P++SIINHSC PNA+LVFE ++AVVRA+++I KDSEV+ISY+ETA ST+TRQK+LKEQYLF C C  C+ +G+  DI+ESAILEGYRC +  C+GFLLR+ DEKGFVCQ+C L+R+KEE++K+A D+K +S+KA
Sbjct:  182 KFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAILVFEEQMAVVRAMENISKDSEVTISYIETAGSTLTRQKSLKEQYLFHCECAGCSNIGKPHDIEESAILEGYRCANETCTGFLLRDPDEKGFVCQKCKLLRSKEEVKKLAGDVKTVSEKA 337

HSP 3 Score: 73.559 bits (179), Expect = 4.669e-10
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWL 2391
            E W+E L  CRL +PVY+R+YP  HPL+GLQ+Y+ GKLEWL
Sbjct:  386 ESWREVLNYCRLIVPVYQRIYPATHPLIGLQFYTQGKLEWL 426

HSP 4 Score: 71.2478 bits (173), Expect = 2.563e-9
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1

Query: 2914 DRLLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSREDS 3081
            + LLGET++A++S  KA +ILRI+HGTST FMKEL  KL+EAR EAS+KL + +D+
Sbjct:  424 EWLLGETEEAVRSLAKAFEILRISHGTSTHFMKELSEKLDEARAEASYKLLALKDA 479

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: A0A059BA85_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00611 PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 7.223e-80
Identity = 131/187 (70.05%), Postives = 163/187 (87.17%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKS-NLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSKV 713
            ME+L+A+L+ R LT+++ P+KGRSLLAA DF+ G+VI+SQEPYV  PN +  E RCDGCF+ S  L+KCSAC  VWYCGSSCQK EWK+HRLEC  LA+LDKE+RKSVTP+IR+M+KLY+RRKLQ+E +I  TAMDNY+LV+ALVSHMS+IDEKQL+LYAQMANL+N+ILQ P I+IKE+AENFSK+
Sbjct:    1 MEDLKAALRDRCLTVASLPEKGRSLLAATDFHQGQVILSQEPYVFAPNAA--EPRCDGCFATSARLRKCSACQAVWYCGSSCQKSEWKMHRLECMALARLDKEKRKSVTPSIRLMIKLYIRRKLQDEKIISTTAMDNYSLVDALVSHMSEIDEKQLVLYAQMANLINIILQWPEINIKEVAENFSKL 185

HSP 2 Score: 253.062 bits (645), Expect = 4.357e-70
Identity = 117/155 (75.48%), Postives = 135/155 (87.10%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDK 1640
            + +CNAHTICDSELR LGTGLYPVISIINHSCLPNAVL+FEGR AVVRAVQHIP+ SEV ISY+ETA ST TR K+L+EQY F C C RC KLGQ  DI+ESAILEGYRC D+ CSGFLLR+S+++GFVCQQCG +RNKEEIR IAS+IK +S++
Sbjct:  184 KLSCNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLLFEGRTAVVRAVQHIPQGSEVLISYIETAGSTTTRLKSLREQYHFACACPRCAKLGQPDDIKESAILEGYRCEDDRCSGFLLRDSEKQGFVCQQCGRVRNKEEIRDIASEIKLMSER 338

HSP 3 Score: 79.7221 bits (195), Expect = 4.310e-12
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEWLEKYLALVIDFILWFTSFFHLF 2454
            E+WKEAL  C+LTIPVYERVYPG+HPLLGLQYY+ GKLEWL   L   ++ I   T    + 
Sbjct:  387 EDWKEALVYCKLTIPVYERVYPGYHPLLGLQYYTSGKLEWL---LGDTVNAIKSLTKAIDIL 445

HSP 4 Score: 73.1738 bits (178), Expect = 6.235e-10
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1

Query: 2920 LLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRED 3078
            LLG+T +AIKS TKA+DILR+THG +T F++EL+MKLEEAR EAS  LS  ++
Sbjct:  427 LLGDTVNAIKSLTKAIDILRVTHGMNTEFVRELVMKLEEARAEASHNLSCADE 479

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: V7AUN6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G121500g PE=4 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.432e-79
Identity = 132/188 (70.21%), Postives = 162/188 (86.17%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNS--LTESRCDGCFSKSN-LKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            ME+LQ++L+  GL++ST P+KGRSL A RDFYPG+VII QEPYVCVPNNS   T  RCDGC + SN L++CS CHV +YC ++CQ+ EWKLHRLEC++L++LDK++RKSVTP+IR+MV+LYLRRKLQ++ VI  TAMDNYNLVEALV+HMSDI E+QL+LYAQMANLV  ILQ P I+IKEIAENFSK
Sbjct:    1 MEDLQSALKDCGLSVSTVPEKGRSLFATRDFYPGDVIIGQEPYVCVPNNSPLSTPKRCDGCLTTSNVLRRCSRCHVAYYCRTACQRSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVRLYLRRKLQDDKVISSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYYILQWPEINIKEIAENFSK 188

HSP 2 Score: 237.269 bits (604), Expect = 1.733e-64
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            +FACNAHTICDSELR +GTGLYPVISIINHSCLPN+VLVFEGR A+VRAV+HIP  +EV ISY+ETA ST+TRQK LKEQYLFTC C RC+KLGQ  D QESAILEGYRC+ + C GFLL  +D KGF CQ C L+  KEE+++  ++I+ LS++A
Sbjct:  188 KFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVEHIPIGTEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCSKLGQNDDTQESAILEGYRCKSDKCGGFLLHTTDGKGFQCQGCQLVMGKEEVKETITEIELLSEEA 343

HSP 3 Score: 83.5741 bits (205), Expect = 2.959e-13
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 2923 LGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSS 3069
            LGE ++ +KS TKAVDILRITHGT+TPFMK+LLMKLEEAR EAS+K SS
Sbjct:  434 LGEIEEGVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARAEASYKFSS 482

HSP 4 Score: 82.0333 bits (201), Expect = 8.833e-13
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEW 2388
            E W EALA C+LTIP YE+VYP  HPLLGLQYY+CGKLEW
Sbjct:  393 EHWTEALAYCKLTIPFYEKVYPSIHPLLGLQYYTCGKLEW 432

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: U5U2I4_PHAVU (Histone-lysine N-methyltransferase ASHR1-like protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.628e-79
Identity = 132/188 (70.21%), Postives = 162/188 (86.17%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSL--TESRCDGCFSKSN-LKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            ME+LQ++L+  GL++ST P+KGRSL A RDFYPG+VII QEPYVCVPNNS   T  RCDGC + SN L++CS CHV +YC ++CQ+ EWKLHRLEC++L++LDK++RKSVTP+IR+MV+LYLRRKLQ++ VI  TAMDNYNLVEALV+HMSDI E+QL+LYAQMANLV  ILQ P I+IKEIAENFSK
Sbjct:    1 MEDLQSALKDCGLSVSTVPEKGRSLFATRDFYPGDVIIGQEPYVCVPNNSSLSTPKRCDGCLTTSNVLRRCSRCHVAYYCRTACQRSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVRLYLRRKLQDDKVISSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYYILQWPGINIKEIAENFSK 188

HSP 2 Score: 80.4925 bits (197), Expect = 3.033e-12
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1

Query: 2269 EEWKEALAICRLTIPVYERVYPGFHPLLGLQYYSCGKLEW 2388
            E W EALA C+LTIP YE+VYP  HPLLGLQYY+CGKLEW
Sbjct:  394 EHWTEALAYCKLTIPFYEKVYPFIHPLLGLQYYTCGKLEW 433

HSP 3 Score: 80.1073 bits (196), Expect = 3.805e-12
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1

Query: 2914 DRLLGETDDAIKSFTKAVDILRITHGTSTPFMKELLMKLEEARVEASFKLSSRED 3078
            +  LGE ++ +KS TKAVDILRITHGT+TPFMK+ LMKLEEAR EA +K SS E 
Sbjct:  432 EWYLGEIEEGVKSLTKAVDILRITHGTNTPFMKDFLMKLEEARAEAFYKFSSVEQ 486

HSP 4 Score: 75.8702 bits (185), Expect = 8.159e-11
Identity = 49/157 (31.21%), Postives = 65/157 (41.40%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESA-ILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKA 1643
            +FACNAHTICDSEL                                                               K+ YL TC C   +K  +  D QESA   +GYRC+   C GFLL ++D KGF CQ C L+  K EI++  ++I+ LS++A
Sbjct:  188 KFACNAHTICDSELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKQLYLSTCKCPWGSKESECNDTQESANFKKGYRCKSEKCGGFLLHKTDGKGFQCQGCQLVMGKGEIKETITEIELLSEEA 344

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Match: A0A072V0H4_MEDTR (Histone-lysine N-methyltransferase OS=Medicago truncatula GN=MTR_3g073000 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.695e-79
Identity = 131/185 (70.81%), Postives = 154/185 (83.24%), Query Frame = 3

Query:  156 MEELQASLQPRGLTLSTFPDKGRSLLAARDFYPGEVIISQEPYVCVPNNSLTESRCDGCFSKSNLKKCSACHVVWYCGSSCQKLEWKLHRLECQLLAKLDKERRKSVTPTIRMMVKLYLRRKLQNENVIPVTAMDNYNLVEALVSHMSDIDEKQLLLYAQMANLVNLILQLPNIDIKEIAENFSK 710
            MEELQ +L+   LT+ST  +KGRSL   RDF+PG+VIISQEPYVCVP    T+ RCDGCFS +NL KCS C VVWYCG+ CQK EWKLHRLECQ L++LD  +RKSVTP+IR+M+KLYLRRKLQ++ +IP TAMDNY LVEALV+HMSDI E+QL+LYAQMANLV+LILQ P I+IKEIA  FSK
Sbjct:    1 MEELQQALKNCNLTVSTISEKGRSLFTTRDFHPGDVIISQEPYVCVP----TQKRCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLHRLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIANFFSK 181

HSP 2 Score: 245.358 bits (625), Expect = 2.461e-68
Identity = 109/158 (68.99%), Postives = 137/158 (86.71%), Query Frame = 3

Query: 1176 QFACNAHTICDSELRSLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHIPKDSEVSISYVETAASTITRQKTLKEQYLFTCICVRCNKLGQYGDIQESAILEGYRCRDNGCSGFLLRESDEKGFVCQQCGLIRNKEEIRKIASDIKALSDKALK 1649
            +FACNAHT+CDSELR LGTGLYPV+SIINHSCLPN+VLVF+GR A VRA+QHIPK +EV ISY+ETA ST+TRQK L+EQYLF C+C  C+K+GQY D++E+AILEGYRC++  C GFLLR +D K F CQ+CGL+R+KEEI++IA++IK L ++A K
Sbjct:  181 KFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREASVRALQHIPKGTEVLISYIETAGSTVTRQKALREQYLFQCVCPLCSKVGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLLEEASK 338

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
SMYD2_PIG	9.702e-16	43.33	N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=...	[more]
SMY2A_DANRE	2.034e-15	42.22	N-lysine methyltransferase SMYD2-A OS=Danio rerio ...	[more]
MSTAA_DROME	6.872e-15	39.62	Protein msta, isoform A OS=Drosophila melanogaster...	[more]
SMY2B_DANRE	6.318e-14	30.27	N-lysine methyltransferase SMYD2-B OS=Danio rerio ...	[more]
Y7331_DICDI	5.125e-11	31.30	SET and MYND domain-containing protein DDB_G027733...	[more]
SMYD4_MOUSE	3.681e-10	40.45	SET and MYND domain-containing protein 4 OS=Mus mu...	[more]
MSTAB_DROME	4.882e-10	35.29	Protein msta, isoform B OS=Drosophila melanogaster...	[more]
Y3589_DICDI	1.005e-9	32.17	SET and MYND domain-containing protein DDB_G027358...	[more]
SET6_SCHPO	1.184e-9	35.56	SET domain and MYND-type zinc finger protein 6 OS=...	[more]
SMYD4_HUMAN	4.013e-9	37.14	SET and MYND domain-containing protein 4 OS=Homo s...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0092647 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4M3A4_EUTSA	6.734e-80	70.81	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
A0A059BA85_EUCGR	7.223e-80	70.05	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
V7AUN6_PHAVU	1.432e-79	70.21	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
U5U2I4_PHAVU	1.628e-79	70.21	Histone-lysine N-methyltransferase ASHR1-like prot...	[more]
A0A072V0H4_MEDTR	1.695e-79	70.81	Histone-lysine N-methyltransferase OS=Medicago tru...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 58..95 e-value: 2.8E-9 score: 36.8
IPR002893	Zinc finger, MYND-type	PROSITE	PS01360	ZF_MYND_1	coord: 58..95
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 58..95 score: 11.603
None	No IPR available	PANTHER	PTHR12197	SET AND MYND DOMAIN CONTAINING	coord: 1..187
None	No IPR available	PANTHER	PTHR12197:SF165	HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1	coord: 1..187
None	No IPR available	SUPERFAMILY	82199	SET domain	coord: 13..65
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 53..100

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092647 ID=g.barbadense_cottongen_reftransV1_0092647; Name=g.barbadense_cottongen_reftransV1_0092647; organism=Gossypium barbadense; type=contig; length=3428bp
GTCGTTTTTATCCAAAATTACTTTTGAAGAGCAATGAGAGTGCCGTTTTA
ATTTTTTTTTTCTTGTTTACGAAAAGATCTGACGCCGAGGATTAGTCTTT
CATTAGTCTAAAGCAAAAACCTTCCAGAGCTTACTAGTTCTGGCTTTGCT
TGTTGATGGAGGAATTACAGGCTTCTCTTCAACCTCGAGGCTTAACCCTT
TCAACTTTCCCCGATAAAGGCCGTTCCCTCCTCGCTGCCAGGGATTTCTA
TCCAGGAGAAGTGATTATAAGCCAAGAGCCATACGTCTGCGTGCCCAACA
ACTCCTTAACCGAATCAAGGTGCGATGGATGTTTCAGCAAAAGCAATCTT
AAGAAATGCTCAGCTTGTCATGTTGTTTGGTATTGTGGGAGCTCATGTCA
GAAACTGGAATGGAAGTTGCATCGGCTCGAGTGTCAGTTACTCGCTAAGC
TTGACAAAGAAAGGAGAAAATCTGTTACGCCTACCATCCGAATGATGGTG
AAACTTTACCTTAGGAGAAAGTTGCAAAATGAGAATGTCATCCCTGTTAC
AGCTATGGACAATTACAATTTGGTGGAGGCTTTGGTTTCTCACATGTCGG
ATATTGATGAGAAGCAGCTATTGTTATATGCGCAGATGGCTAACCTTGTT
AACTTGATTCTTCAGCTCCCCAACATCGACATAAAGGAGATTGCTGAAAA
CTTTTCCAAGGTCCATATTGAACGGTTTTAAGCTTCTAATTCCTTAGTTT
ATCATTTGAGTCATAATTACTTGAAACATATTAAATTTAATATGTTTTCC
TTCCTCACTCACTCCAAGAAAGAAATTAATGAAGGTTATATCTAGGTACT
ATGTAAGCAGTCTTGCATTTCTTCCATGTGATCTTTTGCTATTTTATCAT
TAAATCTTAAATTTCAAATCAACAGGAAGAATGCAAGCTTCTGTTAGGAA
CTTATGGGTTGCTTAAAACATTATGCAGAAAAGGATCAAGGTTGTATAAG
TTATGTTTCAATTAGATGGATGTTCAATCCAAAAGTAAGATTGGCCTGAA
TAAGCAGTCCCGGAATTTATTACAGTGTAATTTCATGCCTCTTTTATTGT
AACAAAGTTAGGAATCTTAACAAGTTCTGTCTAAGCTGGATGAACATATG
TTCTTATTTATTATTATGAAAATGGCAGTTTGCATGTAATGCGCATACCA
TTTGTGACAGTGAACTGAGATCGCTTGGGACAGGACTGTATCCTGTTATT
TCTATTATCAACCACAGCTGCTTGCCAAATGCTGTCTTGGTATTTGAAGG
AAGGTTGGCTGTGGTACGTGCTGTACAACATATACCCAAAGATTCTGAGG
TATCAATCAGTTATGTAGAGACTGCTGCAAGTACAATTACTCGGCAAAAG
ACTCTCAAAGAACAGTACCTTTTCACTTGTATATGTGTTCGCTGTAACAA
ACTGGGTCAGTATGGTGATATCCAAGAAAGTGCAATTCTAGAAGGCTATC
GGTGCAGGGACAACGGATGCAGTGGCTTCTTGCTTAGAGAATCAGATGAA
AAAGGATTTGTTTGCCAACAATGTGGCCTCATTAGAAACAAGGAAGAGAT
AAGAAAGATTGCTAGTGATATCAAAGCATTGTCGGACAAGGCTCTTAAGT
GTAGTTCCTCGGGCAGTATCCTTCTCTTCTTTTCTTTGTTGACTAACTAG
GCATTATTGGTGGAAATTCAATTAAATATCATTGAATATAATCTCATTGG
TGAACTAATCTCATCTGGTAATAATTTAATTCACATTCATTGAAGGAAAG
GAATGAAAGTTGATTCTTAACCTGAACTTCAGATCTTCAGGAAGCCATTG
TTTTGTATAAAAATATTGAAAAGCTCCAGAAGGAAGTGTACCATCCTTTT
TCAATCATTTTGTTGAGAACTTGGGAAAAACTTCTTGAGGTACTTCCTTG
AGTCATGTTCACATTTCTGAGCAGAATGTAGCTTGAAGAAACATAGTTTA
AAGATGATTCAATTTCATATGATGTAGCAGTAGGATTCTTATTACTAATT
CAGCTTCACATCAGTGTATATTCTTGTCTTGTTACTTCCCAATCTGATGA
ATCGCTAGATCATGTCAGAAGCTAAACTGAAAGCTAACACCTCTTGTTTC
CTCTTCTATCAAACATCCCTTGGTAAAATAACATTGGTTTTATCGGCAAT
AACAATTGTGTTGATGTGTGATTTGATACAAATTGAATCAATTAATCCTG
CAGATATTAATGCAGCTGGAAGAATGGAAAGAAGCTTTGGCAATTTGCAG
ATTGACGATTCCGGTGTATGAAAGGGTTTATCCAGGATTTCATCCTTTGC
TTGGATTACAATACTACAGTTGTGGAAAGCTTGAATGGTTAGAGAAATAT
CTTGCCCTTGTTATTGACTTCATTCTCTGGTTTACTTCTTTCTTCCACTT
GTTCATCTTAGAAAATGTTAGTCATATCCAGCACCCTATAAGCTTTATAA
AATGAACTGAGGCCATCACTTTCTATGAAGTTGTCTCTCGGGACCTTGTA
GCAGCTAAAGTACACACTTTCGTCTGCTCAACATGAATGTGAAATGCACC
AAATTTTATGACTTAACATAGCTGTGTTCATCCAGGAATATAACCAAAAA
TTCAGAACTGCATCAGATTTATCGGATTATTACTTAATAAGAACTTCAGT
ATCTTTAGCAACTTTTCTTGAACCTGGCAAAGTTTATTCCAAGGTCCTTT
AGAGGCAAATATGCATTCTTTTAGTTGTAGCTGGTAGGTTTTGAGATCTT
TAACAGGTCAATGAGTGGGCATGATCTTAAAATAACCTCTCAAAGAATCC
CTTTACAAATGGTTTGATAGTTTTACTCAGTTTTGGATTAAAAAAACTTC
GATATTTATTAATGACAGGTTGCTAGGGGAGACAGATGATGCTATCAAGT
CGTTCACCAAGGCGGTTGACATACTGCGAATCACTCATGGGACAAGTACA
CCATTTATGAAAGAACTGTTGATGAAGTTGGAGGAAGCTCGTGTTGAAGC
GTCGTTCAAGCTCTCATCAAGAGAGGACTCATAAATTACGTTGTGAATGT
TATTGGCATTGTCTTCAATGTGAAGCTTACAGGCTTGCATCAAGGAATGA
CTCAATTGTGCTCTTCCATATCCGGAAGCCAAGAGCTTGGTTTCTCTCGG
GTTCATTGGAGATTTTTCAGCTTAAATGAGAAAAGGATTATGTATCGACT
GAAAAATATCAGTATTAGCTAATGTTGTAAGAATTGGATCGGACTGTGAT
TAAACGGTGGTCTAATTGGTGTATTACACTATATGAAACCACCCACTTAG
ATAAAGACCTGTTTTCGTCTTCTTCTTTTTTCATTTTTTATTTTAAAAAT
GATAAAATTTGAGTTTTCAATACGTTAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002893	Znf_MYND

Search form

g.barbadense_cottongen_reftransV1_0092647, g.barbadense_cottongen_reftransV1_0092647 (contig) Gossypium barbadense

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