g.barbadense_cottongen_reftransV1_0092164, g.barbadense_cottongen_reftransV1_0092164 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.547e-29 Identity = 54/143 (37.76%), Postives = 86/143 (60.14%), Query Frame = 3 Query: 1647 AIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYG-MGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWI 2072 A+P YAMSCF L LC ++ +FWW KR I W W+ +C KE+ G +G R++ FN ALLAKQ R+I P +L++R+ +++YFP+ + +G + SY W++I + +L++GL +G G++ + D WI Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 6.022e-21 Identity = 52/200 (26.00%), Postives = 101/200 (50.50%), Query Frame = 3 Query: 1005 TVE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLFADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVF-YSSISKGD--MKNEIS--------EFLGVRVSTNLEKYFGLPSMVGRRKESFLNLKERIS 1571 ++ F+ + ++G ++ L+ + + + +NG + + F G RQG PLSP LF + E L++ +R E +KGI +++S LFADD I++ E T + E++KEY + SG N KS F Y++ ++ + +K+ I ++LGV ++ +++ + KE++ L++ I+ Sbjct: 606 NIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIKLS-LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLY---------KENYETLRKEIA 792 HSP 2 Score: 40.817 bits (94), Expect = 6.022e-21 Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 1 Query: 712 FKQTYIALIPK-SPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILG 891 F + I LIPK +P N+RPISL + K + K +TN +Q I I+ Q FI G Sbjct: 508 FYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPG 568 HSP 3 Score: 37.3502 bits (85), Expect = 6.022e-21 Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = 2 Query: 533 LSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRY 640 L+ P ++ EI + +Q + K+PGPDGF + F++ + Sbjct: 448 LNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTF 483
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.105e-16 Identity = 54/186 (29.03%), Postives = 90/186 (48.39%), Query Frame = 3 Query: 1536 KESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWAT-----KGILAKGLCWKVGTGLNFSIANDAWIPG 2078 K++F + ER+S + G + LS + K+VL ++P ++MS L S+ ++ + F W K+ H +W +C PK+E G+G+R N AL++K G RL+ +SL T V + KY E + L K S W + W + + +++ G+ W G G D W+ G Sbjct: 10 KDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGS--WSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG 193
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.923e-12 Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 3 Query: 1113 INGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISH-LFADD 1307 ING+ + P+RGLRQGDPLSP+LF++C+E LS L R A +G L GI+ I+H LFADD Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADD 79
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 1.220e-10 Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 715 KQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGR-LFRIMFF*LMKSYIVFAR 948 ++ ++L+PK + R + N+RP+SL + YK VAKAI+ L+ V+ I+ QS + GR +F +F L++ + FAR Sbjct: 506 RRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVF--LIRDLLHFAR 582 HSP 2 Score: 41.2022 bits (95), Expect = 1.220e-10 Identity = 26/83 (31.33%), Postives = 37/83 (44.58%), Query Frame = 2 Query: 416 ISEAATIFFQRLFTSNIIG-DLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKD 661 I + A F+Q LF+ + I D L S +L +P E+ AL+ M K+PG DG FF+ +W G D Sbjct: 405 IRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPD 487
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2) HSP 1 Score: 41.9726 bits (97), Expect = 8.609e-9 Identity = 23/80 (28.75%), Postives = 44/80 (55.00%), Query Frame = 2 Query: 413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTK----LSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRY 640 EI F++RL+++ + +L + + + +LN L+SP + KEI+ + + + K+PGPDGF A F++ + Sbjct: 413 EIQNTIRSFYKRLYSTKL-ENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTF 491 HSP 2 Score: 41.2022 bits (95), Expect = 8.609e-9 Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1 Query: 712 FKQTYIALIPK-SPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILG 891 F + I LIPK +P + NFRPISL + K + K + N +Q+ I I+ Q FI G Sbjct: 516 FYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPG 576
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: F4NCI7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 1.263e-103 Identity = 175/445 (39.33%), Postives = 257/445 (57.75%), Query Frame = 3 Query: 879 FHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKE-SFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPG-AINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEE 2201 F R +I DN L+A+EI H+ +K + L + K VE FL+ +M +MGF W+ VM CI++ S+ N+NG P+RGLRQGDP+SP+LFL+C++ S L+ A E + G + CR +SHLF ADD ILF +A+ ++ M+ +I+ +Y+ SGQ N K+ V +S + ++ I LGV+ EKY GLP+++GR K+ +F +KERI K +G +LLS+ K++ IKSV QAIPTY MS F L + L EI + A+FWW R +HW W +C+PK G+G R++ FN +LLAKQ RL T +L+ R+ +A+YF + + L + G S+ W++IW +K +L +GL W VG+G + DAWI G + + + D KV DLI+ A W E + TF EE Sbjct: 543 FVPRRLITDNALVAFEIFHAMKRKDANKNGVCALKLDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGSLSPSRGLRQGDPISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSILFTKASVQECSMVADIISKYERASGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKEVDRQEKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSVFSLPSGLIDEIHSLLARFWWGSSDTNRKMHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQARYFKSSELLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWILGEGAHMVPTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVEE 987 HSP 2 Score: 66.2402 bits (160), Expect = 1.263e-103 Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 2 Query: 413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEFQILTRNVNFSNKRTLRLFQKVQIPE 760 EI +F+ LF ++ ++ L G+ S ++NT L + E+K AL M KAPG DG ALFF+++WHI G DV +F + ++ NK + L K P+ Sbjct: 387 EICGVVQHYFEGLFATDSPVNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLHALFFQKFWHILGSDVISFVQSWWRGMGDLGVVNKTCIVLIPKCDHPQ 502 HSP 3 Score: 32.7278 bits (73), Expect = 1.263e-103 Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 1 Query: 295 Y*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405 Y AR N ++ G KN +FH S RKRRN I+ L Sbjct: 338 YWHARARANEIRDGDKNTKYFHHKASQRKRRNTINEL 374 HSP 4 Score: 30.0314 bits (66), Expect = 1.263e-103 Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 2 Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKLLQTSDPRAYALQNIYRD 2359 +L IPL+R DD +G FSVRS Y L + R + LQ+ R+ Sbjct: 992 VLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHGERE 1041
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q2QWF4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g09530 PE=4 SV=1) HSP 1 Score: 301.982 bits (772), Expect = 1.887e-103 Identity = 166/437 (37.99%), Postives = 249/437 (56.98%), Query Frame = 3 Query: 894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRK-ESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFK-VADLINSAERKWKGELIVDTF 2192 +I DN L+A+E H+ Q + +++ L L K V+ +L+ ++ +MGF+ W+ +M C+T+ YAV NGS + F P+RGLRQGDPLSP+LFL ++GLS ++ A+ G L +K CR+ ISHL FADD +LF +A +A ++KE L Y+ C+ Q + K ++ + + I L V+ ++ +KY GLP+ GR K + F ++KER + + + L G K++ IKSV+QA+PTY MS F L S C E + KFWW + +R +HW W+ + PK GMG ++M FN ALLA+Q RL+ PDSL RV KAKY+PN D L++ + +S WK I +L KG+ W++GTG I D W+P ++ T T K V+DL+ E+ W ++I F Sbjct: 662 MITDNALIAFECFHNIAQSKRESQEFCAYKLDLAKAYDRVDWQYLEGVLDRMGFSNTWIQWMMACVTSVRYAVRFNGSMLKSFQPSRGLRQGDPLSPYLFLFVADGLSTILSSAVRTGDLVPLKVCRQAPGISHLLFADDSLLFFKANVEQATVVKEALNLYERCTSQLLSPAKCSMLFGKHCSDQTQPGIKSLLDVQQNSFEDKYLGLPTPEGRMKADRFQSIKERFFKRLIDWAEKHLPMGGKEVLIKSVIQALPTYMMSVFKLPPSFCEEYMQLVRKFWWGEDRSQRKVHWASWQQLIKPKSMGGMGFKDMKIFNQALLARQAWRLVQFPDSLCARVLKAKYYPNGDLLDTAFSSVSSDSWKGIVHGLELLKKGVIWRIGTGRKVHIWRDDWLPREHGLKVMGKK-TGTRLKWVSDLLVPNEQSWDEQVIRHIF 1097 HSP 2 Score: 63.929 bits (154), Expect = 1.887e-103 Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1 Query: 694 DQKC--EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 DQK E T I LIPK + L +FRPISLC VIYK VAK + N L+ ++ I Q QSAFI GR+ Sbjct: 593 DQKVMPEGVNTTAIVLIPKKKESKELKDFRPISLCNVIYKVVAKCLVNHLRPILESIISQEQSAFIPGRM 662 HSP 3 Score: 62.003 bits (149), Expect = 1.887e-103 Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 2 Query: 413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664 E+ AT FF+ L+T + + LL I + ++N L F+ KEI AL + KAPGPDGFPA FF+R W + DV Sbjct: 501 EMETMATNFFKDLYTKDPLVTPQPLLDLIMLKVTEQMNEDLCKAFSDKEISDALFQIGPIKAPGPDGFPARFFQRNWEVLKNDV 584
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: B9EYH0_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02920 PE=4 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 3.336e-103 Identity = 152/441 (34.47%), Postives = 244/441 (55.33%), Query Frame = 3 Query: 894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMTVE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISH-LFADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKESFLN-LKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVAD-LINSAERKWKGELIVDTFGEEVA 2207 +I D+ L+A+E LHS ++ + N ++ +E +LQ + ++GF WV+ VM+C+T+ YAV ING R+ P+RG+RQGDP+SP+LFL+C+EGLS L++ GLL GI+ +G ISH LFADD I F ++ R ++K L+ Y + SGQ N +KS++ + +K + + L V + Y G+P+ + S N L ER+ + G + R LS+ K+ +K+V+QAIPTY MSCF + ++C +++ A WW G++ +HW ++ FN A+LA+QG R++T+P+SL +RV K +YFP+ DF ++ S+ W++I + +L KG+ W VG G I D WIPG + + + F + D D L+N W E++ F +++A Sbjct: 285 LITDSALVAFECLHSIRRQHSKNPFFALKIDMMKAYDRIEWSYLQGCLTKLGFAPAWVSSVMRCVTSVRYAVRINGELTRLVIPSRGIRQGDPVSPYLFLLCTEGLSCLLQRKESLGLLHGIRNGHQGPPISHLLFADDSIFFAKSDPRSVQVLKSTLQSYCNASGQKINLQKSSLLFGRYCPDAIKTCVKDCLQVSNEALQDTYLGMPTEINCAVTSSFNFLSERVWKRVNGWNDRPLSRAGKETMLKAVVQAIPTYIMSCFQVPTTICDKMKSSMANHWWGYEDGRKKMHW----------------RSDLVIFNQAMLARQGWRILTDPNSLCSRVLKGRYFPDSDFWSAPKPRSASFTWRSILFGRELLKKGVRWAVGDGSTIKITKDKWIPG-VQAGMVNTRFPIPDDVTVDWLMNPERNAWDEEIVKAVFNDDIA 708 HSP 2 Score: 63.929 bits (154), Expect = 3.336e-103 Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 2 Query: 428 ATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664 A FF++LFTS + +L I +N +L ++ +EIK AL M TKAP PDGFPALF++ +W+ D+ Sbjct: 129 AEHFFKKLFTSEQCESVEEVLEAIPCKVDESINEELCKAYSDEEIKEALFQMGPTKAPSPDGFPALFYQSHWNFLENDI 207 HSP 3 Score: 51.6026 bits (122), Expect = 3.336e-103 Identity = 30/73 (41.10%), Postives = 40/73 (54.79%), Query Frame = 1 Query: 679 GISNSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 G D+ E + I LIPK N L FRPISLC V+YK +K + N L+ + + + QSAF+ GRL Sbjct: 213 GFLTGDEIPEGLCDSIIVLIPKIHNLVHLSKFRPISLCNVLYKIASKVLANRLKIFLPDIVSEFQSAFVPGRL 285 HSP 4 Score: 42.743 bits (99), Expect = 3.336e-103 Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 1 Query: 244 IIFLKRLLYMEI----DKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405 II +RLL ++ ++ ++ +Q +R+ WLK G +N FFH SAR+R N I +L Sbjct: 54 IIREERLLEQQLCDLFEREEIMAKQRSRIEWLKEGDRNTSFFHARASARRRTNKIKLL 111 HSP 5 Score: 33.113 bits (74), Expect = 3.336e-103 Identity = 13/40 (32.50%), Postives = 27/40 (67.50%), Query Frame = 2 Query: 2201 SSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKLLQTS 2320 + +L++P++R +DF+ + G F+VRSAY L++++ Sbjct: 708 AREVLQVPISRHGGEDFVSWPHDKRGLFTVRSAYNLVRSN 747
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q2HS45_MEDTR (RNA-directed DNA polymerase (Reverse transcriptase) OS=Medicago truncatula GN=MtrDRAFT_AC157503g30v2 PE=4 SV=2) HSP 1 Score: 301.597 bits (771), Expect = 5.019e-103 Identity = 170/443 (38.37%), Postives = 247/443 (55.76%), Query Frame = 3 Query: 879 FHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKESFLN-LKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWW-QKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFG 2195 F + I DN+L+A EI+H K G + + + K V+ +L +IM +MGF W+ + +T SY V +N R P RGLRQGDPLSP+LF++C+EG+S L++ A +L G+K C+R +SHL FADD LF A + +K+IL Y + S Q N +KS +++S KN +S L V + KY GLPSM+GR K+S N +K+RI + G S ++LSQ K++ IKSV QAIP+Y MS F L +S+ +IE + FWW K G+ GI W W+ + KE GMG R++ F++A+ KQ +TNPD++V+R+FKAKYF NE+FL + LG+ SYVW++IW+++ L G W++G G T V+ LI++ R W LI + F Sbjct: 132 FVAGRTITDNILIALEIIHYLKCKTWGIKGEAALKIDISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDDRVGPIYPGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRANENETRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWMSWERLTMRKEWGGMGFRHIHGFDLAMSGKQCWNFLTNPDAMVSRIFKAKYFTNENFLGASLGHNPSYVWRSIWSSRIFLKTGYQWRIGDG-------------------------STTATVSHLIDAQTRSWNEPLIRNNFN 549 HSP 2 Score: 65.4698 bits (158), Expect = 5.019e-103 Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1 Query: 718 QTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGR 894 T I LIPK +PRT+ + RPISLC V+YK +AK + N LQ V+ CI QS F+ GR Sbjct: 78 DTNIVLIPKCDHPRTMRDLRPISLCNVVYKILAKTLANRLQRVLDKCISVEQSGFVAGR 136 HSP 3 Score: 53.5286 bits (127), Expect = 5.019e-103 Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 2 Query: 488 LMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEF 685 + + + + E N L +PF +E + A+ M+S KAPGPDG F++R+W + G++V C + Sbjct: 1 MQAVAECLNEEDNQFLIAPFTDEEFRDAIFQMQSDKAPGPDGLNPTFYKRFWTLCGEEVVAACRRW 66 HSP 4 Score: 27.335 bits (59), Expect = 5.019e-103 Identity = 11/33 (33.33%), Postives = 21/33 (63.64%), Query Frame = 2 Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308 IL+IPL +D ++ + G +SV++AY++ Sbjct: 556 ILKIPLLHCEQNDAIIWRFDKKGVYSVKNAYRV 588
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5XSK0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016553mg PE=4 SV=1) HSP 1 Score: 345.51 bits (885), Expect = 1.681e-102 Identity = 189/446 (42.38%), Postives = 269/446 (60.31%), Query Frame = 3 Query: 885 SREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTV-FYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRK-ESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRL-SSVPFTMTDFKVADLINSAERKWKGELIVDT-FGEEV 2204 S +I DN +LA EI+H ++R G + + + K +E FL+AIM ++GF W+ L++ CI+T SY+ ING+ P+RGLRQGDPLSP+LFL+C+EGL+ L+ EG LKG+ CR ISHLF ADD LF A M +K+IL Y+ GQ NF+KS V F ++ +GD + +++F+G+ + +Y GLP ++ ++K SF +LKER+ K + G+LLS K+I IK V QAIP Y MSCF L +C ++ + A+FWW + IHW W +C PKEE G+G RN+ FN+ALLAKQG RL+ NPDSLVT+V KAKYFP FL + + S VWK++ + ++ +G W+VG+G I D W+P +F++ S P KV+DLI+ R+W L+ + F EEV Sbjct: 187 SGRLISDNTILAAEIIHYLRRRRRGKKGFMALKMDMSKAYDRIEWSFLEAIMRKLGFAEQWIQLMLTCISTVSYSFVINGTPHGFLHPSRGLRQGDPLSPYLFLLCAEGLTALIAQKEREGFLKGVSICRGAPAISHLFFADDSFLFAWANMADCMALKDILDTYERALGQQVNFQKSAVCFSKNVHRGD-QLMLAQFMGIPCVDHHSQYLGLPMVLDKKKGASFNHLKERLWKKLQTWKGKLLSGAGKEILIKVVAQAIPIYTMSCFLLPKYVCEDLNKLVAQFWWNSSTENKKIHWMAWDRLCAPKEEGGLGFRNLHAFNLALLAKQGWRLLQNPDSLVTKVLKAKYFPTRSFLETTVSPYASVVWKSLCDARTVIIQGSRWQVGSGDTIGIWEDRWLPQPNSFQIFSPRPEHSAITKVSDLIHGDSREWNAPLLQNVFFPEEV 631 HSP 2 Score: 54.299 bits (129), Expect = 1.681e-102 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 697 QKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 QK F T++ LIPK +P+ + RPISLC V++K K + N L+ ++ I +QSA I GRL Sbjct: 127 QKINF---THVVLIPKVKHPKDMSQLRPISLCNVLFKIATKVLANRLKLILDKIISPSQSALISGRL 190 HSP 3 Score: 25.409 bits (54), Expect = 1.681e-102 Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = 2 Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL---LQTSDPRA 2332 I IPL+ D +V + G F+V+SAY + L +S RA Sbjct: 634 IRSIPLSLRLTPDMLVWHYDKKGMFTVKSAYHVARSLHSSTGRA 677 HSP 4 Score: 70.4774 bits (171), Expect = 3.520e-9 Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 2 Query: 437 FFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV----KNFCLEFQILTRNVNFSNKRTLRLFQKVQIPE 760 +F LFTS+ G ++ ++ + ++N L + + EI A+ M TKAPGPDG P +FF++YWHI G DV K+F ++L + +NF++ + L KV+ P+ Sbjct: 37 YFTHLFTSSASGSEGEIIDAVESRVTPDMNNLLLTDYCDAEIHEAVFQMYPTKAPGPDGMPPIFFQKYWHIVGSDVTRAIKDFLTSGRLLQK-INFTH---VVLIPKVKHPK 144
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5XK32_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016563mg PE=4 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 5.288e-102 Identity = 168/443 (37.92%), Postives = 243/443 (54.85%), Query Frame = 3 Query: 876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLFADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKE-SFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFT-MTDFKVADLI-NSAERKWKGELIVDTF 2192 F +I DN ++A+EI H Q+R G + L + K VE FL+ +ML MGF WV +VM C+TT SY+ +NG RI PTRGLRQGDPLSP+LFL+C+E + D +F +AT ++K I + Y+ SG+ N +KS V +S+ D ++ ++ LGV + Y GLP M+GR K F LKER+ K +G + LS K++ +K V Q+IP Y M+CF L LC EIE + A+FWW + R IHW +W+ +C K E GMG R + FN+A+LAKQG RL+ NP SL +R+ KAKYFP+ +F + LG++ S VWK+IW + +L G +++G G + I D W+P F + + P M + KV++LI N +W + + + F Sbjct: 138 AFVPGRLITDNSIVAFEIAHFLKQRRRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEPTRILYPTRGLRQGDPLSPYLFLLCAE-----------------------------VLPHDSFVFAKATDNNCGVLKHIFEVYERASGEQINCQKSCVAFSANIHMDTQSRLASVLGVPRVDSHATYLGLPMMLGRNKTFCFRYLKERVWKKLQGWREQTLSIAGKEVLLKVVAQSIPLYVMNCFLLPQGLCHEIEQMMARFWWGQQGENRKIHWMRWERLCKAKTEGGMGFRCLQAFNMAMLAKQGWRLVHNPHSLASRLLKAKYFPHTNFWEATLGSRPSCVWKSIWTARKVLEMGSRFQIGDGKSVRIWGDKWVPRPAAFVVITSPLDGMENTKVSELICNEGSPQWDLQKLNNLF 551 HSP 2 Score: 62.003 bits (149), Expect = 5.288e-102 Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 718 QTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 T++ LIPK PRT+ RPISLC V+Y+ AK + N ++ V+ I ++QSAF+ GRL Sbjct: 85 HTFVTLIPKVKEPRTMAQLRPISLCNVLYRIGAKTLANRMKFVMQSVISESQSAFVPGRL 144 HSP 3 Score: 59.3066 bits (142), Expect = 5.288e-102 Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 2 Query: 476 LSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664 + +L ++ + ++ L + F+ +EIK A+ M+ +KAPGPDG P LF+++YW I G DV Sbjct: 4 MEEILSALEPKVTADMQQVLIADFSYQEIKDAVFQMQPSKAPGPDGLPPLFYQKYWRIVGDDV 66 HSP 4 Score: 25.7942 bits (55), Expect = 5.288e-102 Identity = 12/32 (37.50%), Postives = 21/32 (65.62%), Query Frame = 2 Query: 2213 LRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308 +RIPL+ D +V + + G F+V+SAY++ Sbjct: 560 VRIPLSIRAPPDRIVWNYDKHGLFTVKSAYRV 591
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5WJW2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020180mg PE=4 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 2.031e-101 Identity = 180/463 (38.88%), Postives = 273/463 (58.96%), Query Frame = 3 Query: 876 CFHSREII*DNVLLAYEILHSF--CQKRTGNRDIWQ*NLILGKLMT---VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSLWRESLT 2243 F +I DNV+ A+EI+++ +KR RD+ Q L L VE FL+A+ML++GF+ WV+ VM CI+TT+++V G+ P RGLRQG PLSP+LFL+C+EG S L+ A G L G++ R ++HL FADD ILF +AT + M ++ + + Y+ +GQ N+ KS + S + + I L V V E Y GLP++ G+ RK+ F +LK+++ G +LLS+ K+I IK+VLQAIPTY+MSCF + LC E+ I A+FWW K KRGIHW +W+ +C K G+G R++ FN ALLAKQ R++ P+SLV R+F+A+Y P+ FL + +G S++W ++ K +L KG+ W+VG+G++ + D W+P F++ S P +V DL S+ +W L+ D F ++ + + + SL Sbjct: 492 AFVPNRMILDNVMAAFEIMNTIKGVKKR---RDV-QMALKLDMAKAYDRVEWVFLRAMMLKLGFSATWVSKVMDCISTTTFSVLWKGTPVGHIMPQRGLRQGCPLSPYLFLICTEGFSCLLHGAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKACMALETLFQTYEEVTGQQINYSKSALSLSPNATRADFDMIEGGLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHISGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFQIPKGLCKELNGIMARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPFLEAEVGTNPSFIWGSLQWGKELLNKGVRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSG-QWNVPLLKDIFWDQEVDAILQIPLASLA 949 HSP 2 Score: 70.0922 bits (170), Expect = 2.031e-101 Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 2 Query: 437 FFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEFQILTRNVNFSNKRTLRLFQKVQIP 757 +F+ LF+S+ + +L ++ + +N +L F +E++ L M TKAPG DG PALFF++YWHI G V CL+ +V N + L KV++P Sbjct: 345 YFKTLFSSSGGQQMERILNEVRPVITSAMNDRLLQAFTREELEHTLFQMFPTKAPGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKVKMP 451 HSP 3 Score: 37.3502 bits (85), Expect = 2.031e-101 Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 1 Query: 277 IDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNII 396 ++K ++ Q +RV WLK G KN FFH S+R +RN + Sbjct: 282 LEKQEIMWRQRSRVVWLKEGDKNTHFFHGRASSRSKRNRV 321 HSP 4 Score: 66.2402 bits (160), Expect = 7.246e-8 Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 682 ISNSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 I N + F T IALIPK P T+ FRPISLCT +YK +AK I N L+ V+ I + QSAF+ R+ Sbjct: 427 ILNGEGSVREFNHTLIALIPKVKMPTTVSEFRPISLCTTVYKMIAKTIANRLKTVLPHVITETQSAFVPNRM 498
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q7XLZ5_ORYSJ (OSJNBa0086O06.14 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0086O06.14 PE=4 SV=2) HSP 1 Score: 277.715 bits (709), Expect = 4.280e-100 Identity = 163/460 (35.43%), Postives = 243/460 (52.83%), Query Frame = 3 Query: 894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRK-ESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL---WRESLTMISW 2255 +I DN L+A+E HS + ++D L L K V+ GFL + ++GF W +M C+T+ Y+V +NG+ F PTRGLR+GDPL+P+LFL ++GLS +++ E ++ +K CR +SHL FADD +LF +A +A IKE L Y+ C+GQ N ++ ++ +S++ + ++ I L V + +K GLP+ GR K E F +KER + S R LS K+ IKSV QA+PTY M F + C E E + FWW G++ +HW W+ + PK G+G R++ FN ALLA+Q RLI +PDSL RV KAKY+PN ++ + +S WK I +L KGL W++G G I + W+ N ++ V +LI + + W LI EE A + + RE +W Sbjct: 533 MITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWNRVIYVRELIVTDTKTWNEPLIRHIIREEDADEILKIRIPQREEEDFPAW 992 HSP 2 Score: 59.6918 bits (143), Expect = 4.280e-100 Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 E T I +IPK+ P + +FRP+SLC VIYK VAK + N L+ ++ I + QSAF+ GR+ Sbjct: 470 EGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFVPGRM 533 HSP 3 Score: 55.8398 bits (133), Expect = 4.280e-100 Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 2 Query: 518 ELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEF 685 E+N L+ PF +EI AL + KAPGPDGFPA FF+R W + +DV EF Sbjct: 407 EMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREF 462 HSP 4 Score: 44.669 bits (104), Expect = 4.280e-100 Identity = 24/74 (32.43%), Postives = 40/74 (54.05%), Query Frame = 1 Query: 184 EMTTSHLVEKDQS*LPVFVFIIFLKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405 E+ + ++ S V IFL+ LL+ E +++ +Q +R+ WLK G +N +FH S R R+N+I L Sbjct: 332 ELEEMRMRGREDSEPDVHRLKIFLQELLHRE----EIWWKQRSRITWLKEGDRNTRYFHLKASWRARKNLIKKL 401
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5WKF7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022768mg PE=4 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 4.844e-99 Identity = 174/412 (42.23%), Postives = 248/412 (60.19%), Query Frame = 3 Query: 876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKES-FLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSS 2102 F S I DN L A EI + ++R G + L + K VE FLQAIM ++GF W+ LV+ CI++ SY+ ING P+RGLRQGDPLSP+LFL C+EGLS L+ LLKG+ C+ ISHL FADD + F AT + +I+ IL +Y+ SGQ N KS+V +SS K + ++ LGV+ + ++Y G+P++VGRR+ + F LKERI + G G+LLS K+I +K+V+QAIP Y+MS F L ++ + A FWW G R IHW W+ +C PK+E GMG R++ FN+A+LAKQG R++T P S+ +++ +AKYFP FLN+ + + +S VWK++ A + +L G W+V G N I +D WIP F++ S Sbjct: 120 AFISEWSIVDNTLTAAEIAYFLKKRRRGKKGFMALKLDMSKAYDRVEWHFLQAIMGKLGFNARWINLVLTCISSVSYSFLINGILTGYLHPSRGLRQGDPLSPYLFLFCAEGLSTLIAKKESAWLLKGVTICKEAPSISHLLFADDSLFFALATVEECQVIRAILAQYEQESGQQLNLMKSSVVFSSNIKRPAQLTLAAALGVQQADYHDRYLGMPTLVGRRRSACFSYLKERIMKRLHGWKGKLLSGAGKEILLKAVVQAIPLYSMSYFLLPRGFYDDLNKLMAGFWWNNSNGDRKIHWISWEKLCKPKDEGGMGFRHLYAFNLAMLAKQGWRILTMPTSMASKLLQAKYFPTSSFLNASVSSHDSAVWKSLCAARKVLEGGTRWQVSDGNNIDIWHDRWIPQPRQFKIYS 531 HSP 2 Score: 62.7734 bits (151), Expect = 4.844e-99 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 2 Query: 449 LFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEFQILTRNVNFSNKRTLRLFQKVQIP 757 LFTS G +L I+ S +N L++ F +E+KTAL M TKAPGPDG P LFF+ + VKNF L + R +N+++ + L KV+ P Sbjct: 2 LFTSQGRGSTQEVLNSIEPRVSISMNNTLNADFTDEEVKTALFQMHPTKAPGPDGMPPLFFQ------NRAVKNF-LHLDRILRKINYTH---VALIPKVKNP 94 HSP 3 Score: 25.0238 bits (53), Expect = 4.844e-99 Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2 Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAY 2302 I IPL+ + D ++ + G+FSVRSAY Sbjct: 539 IHSIPLSIQHPLDQLIWHYDRKGQFSVRSAY 569
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q2QXH7_ORYSJ (Os12g0156200 protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g06010 PE=4 SV=2) HSP 1 Score: 286.189 bits (731), Expect = 5.492e-99 Identity = 162/404 (40.10%), Postives = 226/404 (55.94%), Query Frame = 3 Query: 876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGR-LLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIP 2075 F +I DN LLA+E H+ + + N L L K V+ FL+ M ++GF R WV +MKC+T+ Y V NG+ + F PTRGLRQGDPL PFLFL ++GLSLL++ + + L K CR ISHL FADD +LF +A R+A ++KE+L Y +GQ N K ++ S + ISE L V ++Y G P+ GR K F +L+ +I WK + G LS G K++ IK+V+QAIP Y M F L S+ ++ + FWW G+R HW W + PK G+G R+ FN ALLA+Q RLIT PDSL RV KAKYFP+ +++ G+ +S W++I +L KG+ W+VG G + I D+W+P Sbjct: 670 AFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKI-WKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLP 1072 HSP 2 Score: 59.6918 bits (143), Expect = 5.492e-99 Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1 Query: 706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897 E T I LIPK P L +FRPISLC V+YK V+K + N L+ ++ + QSAF+ GR+ Sbjct: 613 EGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRM 676 HSP 3 Score: 53.1434 bits (126), Expect = 5.492e-99 Identity = 26/86 (30.23%), Postives = 47/86 (54.65%), Query Frame = 2 Query: 407 SLEISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664 ++++ AT +FQ ++T++ + + I++ + +N KL F EI A+ + K+PGPDGFPA F++R W D+ Sbjct: 513 TMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADI 598 HSP 4 Score: 35.039 bits (79), Expect = 5.492e-99 Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1 Query: 253 LKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELRN 417 + LLY E +M Q +RVNWLK +N FFH R ++N IS L N Sbjct: 456 MNELLYRE----EMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDAN 506 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 6
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092164 ID=g.barbadense_cottongen_reftransV1_0092164; Name=g.barbadense_cottongen_reftransV1_0092164; organism=Gossypium barbadense; type=contig; length=2359bpback to top |