g.barbadense_cottongen_reftransV1_0092018, g.barbadense_cottongen_reftransV1_0092018 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A059DI49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02266 PE=4 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 5.212e-91 Identity = 130/173 (75.14%), Postives = 159/173 (91.91%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVSGERL++Y++HKICS+LPEGPFC+VYMHSTVQKEDNSPG++ILRWIYE+LP EIK RLQ++YF+HPG+RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FVQ HDD+LEHRPLTDYGIEPDPLHLTE+P++AYS GRYE+R +R++ S Sbjct: 88 IVGKHFPALVVSGERLRKYVFHKICSDLPEGPFCIVYMHSTVQKEDNSPGISILRWIYEDLPTEIKERLQIVYFVHPGIRSRLVVATLGRLFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVQEHDDILEHRPLTDYGIEPDPLHLTELPHSAYSFGRYEDRWAARDYAS 260
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A067E8D4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025383mg PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 1.129e-89 Identity = 135/172 (78.49%), Postives = 151/172 (87.79%), Query Frame = -3 Query: 279 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFM 794 L+ + APVV GERLK+YI+HKICSELP+GPFC+VYMH+ VQKEDN PG TILRWIYEELP IKNRLQ++YFIHPGL SRL FAT+GRFFLSGGLYWKIKY++RLQYLW DIKKGE+EIPEFVQNHD+VLEHRPLTDYGIEPD LHL EVPN AYS GR++ SREFM Sbjct: 81 LVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFM 252
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: V4S6N3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005702mg PE=4 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 2.421e-89 Identity = 135/172 (78.49%), Postives = 150/172 (87.21%), Query Frame = -3 Query: 279 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFM 794 L+ + APVV GERLK+YI+HKICSELP+GPFC+VYMH+ VQKEDN PG TILRWIYEELP IKNRLQ++YFIHPGL SRL FAT+GRFFLSGGLYWKIKY++RLQYLW DIKKGE EIPEFVQNHD+VLEHRPLTDYGIEPD LHL EVPN AYS GR++ SREFM Sbjct: 81 LVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWSDIKKGETEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFM 252
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: W9RIW7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015543 PE=4 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 2.482e-89 Identity = 128/168 (76.19%), Postives = 151/168 (89.88%), Query Frame = -3 Query: 285 ATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSRE 788 + ++ APVV+ ERLKRYI HK+CSELPEGPF +VYMHSTVQKEDNSPG+TILRWIYE+LP + K+RLQV+YFIHPGLRSRLVFATLGRFFLSGGLYWKIKY+NRLQYLW+DIKK ++EIP+FV++HDD+LEHRPLTDYGIEPDP HL+E P+TAYS GR + +E Sbjct: 14 SVLFAAPVVTAERLKRYIAHKLCSELPEGPFSIVYMHSTVQKEDNSPGITILRWIYEDLPSDFKDRLQVVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYVNRLQYLWDDIKKDDIEIPDFVKSHDDILEHRPLTDYGIEPDPFHLSEAPSTAYSFGRNTTKKDGQE 181
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: C6T5K6_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 7.538e-89 Identity = 127/173 (73.41%), Postives = 153/173 (88.44%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVS ERLKRY+++KICSELPEGPFC+ YMHSTVQKEDNSPG+TILRWIYEELP + K+RLQ +YF+HPG RSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER R ++S Sbjct: 73 IVGKYFPATVVSAERLKRYVFNKICSELPEGPFCIAYMHSTVQKEDNSPGITILRWIYEELPADFKDRLQTVYFVHPGFRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSTTYSFGKYEERWAGRNYVS 245
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: C6T729_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 7.957e-89 Identity = 128/173 (73.99%), Postives = 152/173 (87.86%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVS ERLKRY++HKICSELPEGPFC+VYMHSTVQKEDNSPG+TIL WIYEELP + K+RLQ +YFIHPG RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER R ++S Sbjct: 74 IVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHSTVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFGKYEERWAGRNYVS 246
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: I1N8T3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 9.940e-89 Identity = 128/173 (73.99%), Postives = 152/173 (87.86%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVS ERLKRY++HKICSELPEGPFC+VYMHSTVQKEDNSPG+TIL WIYEELP + K+RLQ +YFIHPG RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER R ++S Sbjct: 74 IVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHSTVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFGKYEERWAGRNYVS 246
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0B2PZW7_GLYSO (Ganglioside-induced differentiation-associated protein 2 OS=Glycine soja GN=glysoja_024021 PE=4 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 9.940e-89 Identity = 128/173 (73.99%), Postives = 152/173 (87.86%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVS ERLKRY++HKICSELPEGPFC+VYMHSTVQKEDNSPG+TIL WIYEELP + K+RLQ +YFIHPG RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER R ++S Sbjct: 74 IVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHSTVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFGKYEERWAGRNYVS 246
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: K4BRF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g040200.2 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.074e-88 Identity = 126/173 (72.83%), Postives = 158/173 (91.33%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A V+S ERLK+Y+++K+C+ELPEGPFC+VYMHSTVQKEDN+PG+TILRWIYEELPP+ K+RLQ +YF+HPGLRSRLV ATLGRFFLSGGLYWK+KY++RLQYLW+DIKKGE+EIPEFVQ HD++LEHRPLTDYGIEPDPLH +++P +AYSLGR++ TSR++MS Sbjct: 78 IVGKYFPALVISAERLKKYVFNKVCTELPEGPFCIVYMHSTVQKEDNNPGLTILRWIYEELPPDHKDRLQAVYFVHPGLRSRLVLATLGRFFLSGGLYWKVKYVSRLQYLWDDIKKGELEIPEFVQKHDEILEHRPLTDYGIEPDPLHFSQMPPSAYSLGRHDTGWTSRQYMS 250
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A022PWM1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012439mg PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 8.572e-88 Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = -3 Query: 285 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSRE 794 ++ + APVVSGERLK+Y++HKI SE+PEGPFC+VY+HST QKEDNSPG+TILRWIYEELP + K+RL V+YFIHPGLRSRLVFATLGRF LSG LYWKIKY++RLQYLW+DIKKGEVEIPEFV+ HDD+LEHRPLTDYGIEPDPLHL EVP TAYS GRYE +RE Sbjct: 78 VVGKYFPAPVVSGERLKKYVFHKILSEMPEGPFCIVYIHSTAQKEDNSPGITILRWIYEELPDDYKDRLSVVYFIHPGLRSRLVFATLGRFLLSGSLYWKIKYVSRLQYLWQDIKKGEVEIPEFVRQHDDILEHRPLTDYGIEPDPLHLVEVPATAYSYGRYESGWGARE 247 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092018 ID=g.barbadense_cottongen_reftransV1_0092018; Name=g.barbadense_cottongen_reftransV1_0092018; organism=Gossypium barbadense; type=contig; length=2035bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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