g.barbadense_cottongen_reftransV1_0092018, g.barbadense_cottongen_reftransV1_0092018 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092018
Unique Nameg.barbadense_cottongen_reftransV1_0092018
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2035
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A059DI49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02266 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 5.212e-91
Identity = 130/173 (75.14%), Postives = 159/173 (91.91%), Query Frame = -3 
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A VVSGERL++Y++HKICS+LPEGPFC+VYMHSTVQKEDNSPG++ILRWIYE+LP EIK RLQ++YF+HPG+RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FVQ HDD+LEHRPLTDYGIEPDPLHLTE+P++AYS GRYE+R  +R++ S
Sbjct:   88 IVGKHFPALVVSGERLRKYVFHKICSDLPEGPFCIVYMHSTVQKEDNSPGISILRWIYEDLPTEIKERLQIVYFVHPGIRSRLVVATLGRLFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVQEHDDILEHRPLTDYGIEPDPLHLTELPHSAYSFGRYEDRWAARDYAS 260
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A067E8D4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025383mg PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.129e-89
Identity = 135/172 (78.49%), Postives = 151/172 (87.79%), Query Frame = -3 
Query:  279 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFM 794
            L+   + APVV GERLK+YI+HKICSELP+GPFC+VYMH+ VQKEDN PG TILRWIYEELP  IKNRLQ++YFIHPGL SRL FAT+GRFFLSGGLYWKIKY++RLQYLW DIKKGE+EIPEFVQNHD+VLEHRPLTDYGIEPD LHL EVPN AYS GR++    SREFM
Sbjct:   81 LVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFM 252
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: V4S6N3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005702mg PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.421e-89
Identity = 135/172 (78.49%), Postives = 150/172 (87.21%), Query Frame = -3 
Query:  279 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFM 794
            L+   + APVV GERLK+YI+HKICSELP+GPFC+VYMH+ VQKEDN PG TILRWIYEELP  IKNRLQ++YFIHPGL SRL FAT+GRFFLSGGLYWKIKY++RLQYLW DIKKGE EIPEFVQNHD+VLEHRPLTDYGIEPD LHL EVPN AYS GR++    SREFM
Sbjct:   81 LVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWSDIKKGETEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFM 252
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: W9RIW7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015543 PE=4 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.482e-89
Identity = 128/168 (76.19%), Postives = 151/168 (89.88%), Query Frame = -3 
Query:  285 ATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSRE 788
            + ++ APVV+ ERLKRYI HK+CSELPEGPF +VYMHSTVQKEDNSPG+TILRWIYE+LP + K+RLQV+YFIHPGLRSRLVFATLGRFFLSGGLYWKIKY+NRLQYLW+DIKK ++EIP+FV++HDD+LEHRPLTDYGIEPDP HL+E P+TAYS GR   +   +E
Sbjct:   14 SVLFAAPVVTAERLKRYIAHKLCSELPEGPFSIVYMHSTVQKEDNSPGITILRWIYEDLPSDFKDRLQVVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYVNRLQYLWDDIKKDDIEIPDFVKSHDDILEHRPLTDYGIEPDPFHLSEAPSTAYSFGRNTTKKDGQE 181
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: C6T5K6_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 7.538e-89
Identity = 127/173 (73.41%), Postives = 153/173 (88.44%), Query Frame = -3 
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A VVS ERLKRY+++KICSELPEGPFC+ YMHSTVQKEDNSPG+TILRWIYEELP + K+RLQ +YF+HPG RSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER   R ++S
Sbjct:   73 IVGKYFPATVVSAERLKRYVFNKICSELPEGPFCIAYMHSTVQKEDNSPGITILRWIYEELPADFKDRLQTVYFVHPGFRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSTTYSFGKYEERWAGRNYVS 245
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: C6T729_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 7.957e-89
Identity = 128/173 (73.99%), Postives = 152/173 (87.86%), Query Frame = -3 
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A VVS ERLKRY++HKICSELPEGPFC+VYMHSTVQKEDNSPG+TIL WIYEELP + K+RLQ +YFIHPG RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER   R ++S
Sbjct:   74 IVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHSTVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFGKYEERWAGRNYVS 246
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: I1N8T3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 9.940e-89
Identity = 128/173 (73.99%), Postives = 152/173 (87.86%), Query Frame = -3 
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A VVS ERLKRY++HKICSELPEGPFC+VYMHSTVQKEDNSPG+TIL WIYEELP + K+RLQ +YFIHPG RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER   R ++S
Sbjct:   74 IVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHSTVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFGKYEERWAGRNYVS 246
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0B2PZW7_GLYSO (Ganglioside-induced differentiation-associated protein 2 OS=Glycine soja GN=glysoja_024021 PE=4 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 9.940e-89
Identity = 128/173 (73.99%), Postives = 152/173 (87.86%), Query Frame = -3 
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A VVS ERLKRY++HKICSELPEGPFC+VYMHSTVQKEDNSPG+TIL WIYEELP + K+RLQ +YFIHPG RSRLV ATLGR FLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER   R ++S
Sbjct:   74 IVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHSTVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFGKYEERWAGRNYVS 246
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: K4BRF7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g040200.2 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.074e-88
Identity = 126/173 (72.83%), Postives = 158/173 (91.33%), Query Frame = -3 
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A V+S ERLK+Y+++K+C+ELPEGPFC+VYMHSTVQKEDN+PG+TILRWIYEELPP+ K+RLQ +YF+HPGLRSRLV ATLGRFFLSGGLYWK+KY++RLQYLW+DIKKGE+EIPEFVQ HD++LEHRPLTDYGIEPDPLH +++P +AYSLGR++   TSR++MS
Sbjct:   78 IVGKYFPALVISAERLKKYVFNKVCTELPEGPFCIVYMHSTVQKEDNNPGLTILRWIYEELPPDHKDRLQAVYFVHPGLRSRLVLATLGRFFLSGGLYWKVKYVSRLQYLWDDIKKGELEIPEFVQKHDEILEHRPLTDYGIEPDPLHFSQMPPSAYSLGRHDTGWTSRQYMS 250
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A022PWM1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012439mg PE=4 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.572e-88
Identity = 132/170 (77.65%), Postives = 151/170 (88.82%), Query Frame = -3 
Query:  285 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSRE 794
            ++   + APVVSGERLK+Y++HKI SE+PEGPFC+VY+HST QKEDNSPG+TILRWIYEELP + K+RL V+YFIHPGLRSRLVFATLGRF LSG LYWKIKY++RLQYLW+DIKKGEVEIPEFV+ HDD+LEHRPLTDYGIEPDPLHL EVP TAYS GRYE    +RE
Sbjct:   78 VVGKYFPAPVVSGERLKKYVFHKILSEMPEGPFCIVYIHSTAQKEDNSPGITILRWIYEELPDDYKDRLSVVYFIHPGLRSRLVFATLGRFLLSGSLYWKIKYVSRLQYLWQDIKKGEVEIPEFVRQHDDILEHRPLTDYGIEPDPLHLVEVPATAYSYGRYESGWGARE 247
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059DI49_EUCGR5.212e-9175.14Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A067E8D4_CITSI1.129e-8978.49Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4S6N3_9ROSI2.421e-8978.49Uncharacterized protein OS=Citrus clementina GN=CI... [more]
W9RIW7_9ROSA2.482e-8976.19Uncharacterized protein OS=Morus notabilis GN=L484... [more]
C6T5K6_SOYBN7.538e-8973.41Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
C6T729_SOYBN7.957e-8973.99Putative uncharacterized protein OS=Glycine max PE... [more]
I1N8T3_SOYBN9.940e-8973.99Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PZW7_GLYSO9.940e-8973.99Ganglioside-induced differentiation-associated pro... [more]
K4BRF7_SOLLC2.074e-8872.83Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A022PWM1_ERYGU8.572e-8877.65Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001251CRAL-TRIO lipid binding domainPFAMPF13716CRAL_TRIO_2coord: 8..125
e-value: 1.4E-25
score: 89.9
NoneNo IPR availablePANTHERPTHR11106GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATEDcoord: 4..169
NoneNo IPR availablePANTHERPTHR11106:SF64SUBFAMILY NOT NAMEDcoord: 4..169

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092018 ID=g.barbadense_cottongen_reftransV1_0092018; Name=g.barbadense_cottongen_reftransV1_0092018; organism=Gossypium barbadense; type=contig; length=2035bp
CTCCCAACAAAATGCCGACAAATTAATTATCAAATTTATAGTATCTATGA
TATTTTAAAGCTGCAATATAATAGTAAATCTATGCATTAATGTTAGCCAT
AACACACCAAATTTAATTAACTACAAGTACAGCGTAGCGATTTCTCACAA
TTCAAGGCACGCAATATAAAGACTACTATAGACAATCTTATTTCTTGTTT
TACCTGATAATTCCTACTGGCCAGATCCTGCAAACCCTTTTACTGGGTTC
AGCTGTGTATTTAATATCTAAACTATGACATGAATTCCCTTGAGGTTAAT
CTCTCTTCATACCTCCCTAATGAGTAAGCAGTGTTAGGTACCTCTGTTAA
GTGGAGAGGATCTGGCTCAATACCATAATCTGTTAAGGGCCGGTGCTCAA
GAACATCGTCATGGTTTTGCACAAATTCAGGGATCTCAACCTCTCCCTTC
TTTATGTCCTCCCATAGGTATTGTAGGCGGTTTATGTATTTGATCTTCCA
GTATAAACCCCCACTTAAGAAGAATCGGCCAAGAGTGGCAAAGACAAGCC
GTGAACGAAGCCCAGGGTGTATGAAGTAGATGACTTGCAGCCTATTCTTG
ATCTCAGGGGGAAGTTCTTCGTAAATCCACCTCAAGATAGTAACACCAGG
GGAGTTATCCTCCTTCTGCACTGTACTGTGCATATAAACTAAGCAGAATG
GACCTTCAGGCAACTCACTGCATATCTTGTGGTATATATATCTCTTCAGT
CGCTCCCCGCTAACAACTGGAGCTGTATACATTGTGGCAAGTAGTTAGTA
AAAAGCCAAATCGAAGTTTACTAGAGGAACAACTTAAGCCTGAAGAAACC
CGATAAAATTTGTTCAATTTCAAATATTGTCTTTGACATTAATCAAGAAA
CCAACATTTAAGACAATTACATCACAATCAAACAGAACTCTTTAGAGAAT
AGAAATGAAAACTGCAAAGACTTATCACATTGAGCTTCACACCAAGAGGT
TCAACTAATGTAAAGGACTCTGGCATAAATGCATTGCATTAGGTACATAG
GATGATGGAGAGGATAAAACAAATAAGTATATGGAAAAAGGTAGGATCGG
ATGATCTTATCCTATTCATGTTTAGTGTATAATAAGTTAAAAAGTATATT
TGTCATAGATTTCATCTTCAGCCATGTTTTGTGTAGGATAGGTCATAGGG
TAATATTTTGGTGATCGGTCTAAATTAACTCCCAAATCAACTGAAGTAAA
AGCATAATGATGAAAACTAAGGAAAGAAATAAAATCGAAACCTAAGCCTT
GATTAGAGATTCGAAATTAACTAATGGCCTTTCCTAAAATAGGTTTAGCC
CATAACATATATACACTCCATTACCTATACTAGAGGTGCCTCGGACTCAT
TAAGCATTAATTTTGTCTTGGGATTACAAAAAAAAAAAGTTTATGGTTCC
ATCTTTGTTGTGGTGATAATTCTCGACTATAACACATTACATTCTTTGTT
CTATGAATTCTGATGCTACTCATATTACTGAGTTGTTTTCAAGAAAATGC
TAAGGCTACATGGTGCTCTGAAATCTATAGTTTTTTATAGCAAAAATGAT
GAGTCAAAGAAATATAGAATCCAAACTACAATATTAACGTAAACAATGCA
AGCCAAGCACATTTAAGCTTACTTAGACACTTCTTGCTATTTTGCGTATT
GCACATTATAATTGGTTAATCATAATTGAGATATTCTATATTAATAAGTA
AACTTCAATGATATGATCATATAAAATTATGAAAACAAAGACCATATGAC
ATAGAAAGCCTAACAAAGTAATTATTAAGAGTTACTATTATTAAATCCTT
ATGCATGACAATCATGTTTCTTAGATAGATTCTAGTAGTGTCATTGAGGG
CACAAGGTGCAGTCTAAGCACTAGAAACCTTTATTGCTTGGGGCACAAGG
CACAAAAAGAAGGCTCACCTGAGTGAAGCATGGTGCAATGTATATTTGTG
TATTTAAGTGCCTCCCTCCCTCCTATCTCTCTCTC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom