g.barbadense_cottongen_reftransV1_0092017, g.barbadense_cottongen_reftransV1_0092017 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: C6TI80_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 6.218e-53 Identity = 93/116 (80.17%), Postives = 108/116 (93.10%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F+M L++V NV VSCT+IPL++L+YEPPRT+SFKTIEASLRVDALASAGFK+SRSKLVD+ISNGDVR+NW VT GTTLK+GDI+S+SGKGRLKIGEINSTKKGKF+VELIRYL Sbjct: 209 FLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 324 HSP 2 Score: 123.25 bits (308), Expect = 2.519e-43 Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+ Q +KG+ D+LLKGVG++S +EVKHIL+ ARRA+ +RE+ HTDFLTPPVLKESM VL+KLADVKA+AQGGYPQ E Sbjct: 54 SGVSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAE 135 HSP 3 Score: 82.4185 bits (202), Expect = 2.519e-43 Identity = 46/92 (50.00%), Postives = 52/92 (56.52%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH E LT+DP D I L SI+GNF F+PCSHGDFLG+ILG GI REKLGDIILQ Sbjct: 134 AERCRISVGHPEELTSDP--------------------DIISAL------------SITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQ 193
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V7CPF8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286700g PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 6.759e-53 Identity = 95/116 (81.90%), Postives = 108/116 (93.10%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F+M L++V NV V+CT+IPL++L+YEPPRT+SFKTIEASLRVDALASAGFKISRSKLV++ISNGDVRVNW VT GTTLK+GDIISVSGKGRLKIGEINSTKKGKF+VELIRYL Sbjct: 208 FLMSTLVKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVNMISNGDVRVNWNPVTTKGTTLKSGDIISVSGKGRLKIGEINSTKKGKFAVELIRYL 323 HSP 2 Score: 118.627 bits (296), Expect = 5.894e-42 Identity = 58/114 (50.88%), Postives = 80/114 (70.18%), Query Frame = 2 Query: 1004 HMYMFQQMGCMHIQQC*FSSRVTSYLKF*NAHTGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 H ++F Q+ SS++ S ++ +G+ Q G+ DVL+KGVG+++ +EVKHIL+ ARRA+ +RE HTDFLTPPVLKESM+VL+KLADVKA++QGGYPQ E Sbjct: 24 HSHIFNTNATFSFQRK-LSSQILSVST--SSASGVSQAVQASNGEVDVLVKGVGERNVTKEVKHILEMARRASLKRETLHTDFLTPPVLKESMLVLEKLADVKAISQGGYPQAE 134 HSP 3 Score: 82.4185 bits (202), Expect = 5.894e-42 Identity = 46/92 (50.00%), Postives = 51/92 (55.43%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH E LT+DP D I L SI GNF F+PCSHGDFLG+ILG GI REKLGDIILQ Sbjct: 133 AERCRISVGHPEELTSDP--------------------DVISAL------------SIKGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQ 192
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.841e-52 Identity = 94/116 (81.03%), Postives = 109/116 (93.97%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NV+VSCT+IPL ALEYEPP+T++FKTIEASLRVDA+ASAGFKISRSKLVDLIS+GDVRVNW ++TKNGT LKTGDI+SVSGKGRLKIGEINSTKKGKF+VELIRY+ Sbjct: 204 FLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 319 HSP 2 Score: 120.168 bits (300), Expect = 2.452e-42 Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+C + Q +KGD DVLL GVGDK I +VK IL A+R+ +RREV HT+FLTPPV+KESM+ +QKLADVKA+AQGGYP+ E Sbjct: 49 SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAE 130 HSP 3 Score: 82.4185 bits (202), Expect = 2.452e-42 Identity = 45/92 (48.91%), Postives = 54/92 (58.70%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH++ LT+DP D I L SI+GNF+F PCSHGDFLG+ILG GIAREKLGDI+LQ Sbjct: 129 AERCRISVGHADELTSDP--------------------DIISAL------------SITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQ 188
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: Q93YQ0_ARATH (At1g53120 OS=Arabidopsis thaliana GN=F10L8.3 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 8.027e-52 Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 FV+ L +V NV V+C++IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLIS+ DVRVNWATVTKNGT +KTGD++SVSGKGRLKIGEIN TKKGKF+VE+IRYL Sbjct: 205 FVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGEINETKKGKFAVEIIRYL 320 HSP 2 Score: 115.931 bits (289), Expect = 1.133e-41 Identity = 55/107 (51.40%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 1031 CMHIQQC*FSSRVTSYLKF*NAHTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 C+H Q + ++ F + L C+ ++ IKGD D LLKGVGD++ +EVK IL+ ARRA+++REV HTDFLTPP++KES+ +L+K ADVK VAQGGYP+ E Sbjct: 25 CLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVAQGGYPEAE 131 HSP 3 Score: 84.7297 bits (208), Expect = 1.133e-41 Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+SIGH +VLT+DP++VA +SI+GNF FQPCSHGDFLGAILG GI+REKLGDI++Q Sbjct: 130 AERCRISIGHPDVLTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGAILGTGISREKLGDILIQ 189
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: B9HZV1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12050g PE=4 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 2.408e-51 Identity = 92/116 (79.31%), Postives = 106/116 (91.38%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 +++ L +V +VSVSCT IPL A+EYEPPRT+SFKT+EASLRVDALASAGFKISRSKLVDLISN DVRVNW T+TKN TTLKTGD++SVSGKGRLKIGEIN+T+KGKF+VELI YL Sbjct: 207 YIVSSLDKVGDVSVSCTPIPLHAIEYEPPRTKSFKTVEASLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDVVSVSGKGRLKIGEINTTRKGKFAVELIHYL 322 HSP 2 Score: 124.405 bits (311), Expect = 3.618e-42 Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2 Query: 1103 GLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 G+CH++Q KG+ V LKGV DKS IEEVK ILD ARRA+ RREV HTDFLTPP LKES+ VL+KLADVKA+AQGGYPQ E Sbjct: 54 GMCHVAQATKGEV-VALKGVEDKSVIEEVKRILDMARRASLRREVLHTDFLTPPTLKESLHVLEKLADVKAIAQGGYPQAE 133 HSP 3 Score: 77.411 bits (189), Expect = 3.618e-42 Identity = 45/91 (49.45%), Postives = 52/91 (57.14%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIIL 1694 AERCRLS+GH E LT+DP++VA +SI+GNF FQ CSHGDFLGAILG GIAR KLGDII+ Sbjct: 132 AERCRLSVGHPETLTSDPDIVAA--------------------------------LSITGNFGFQLCSHGDFLGAILGTGIARNKLGDIIV 190 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092017 ID=g.barbadense_cottongen_reftransV1_0092017; Name=g.barbadense_cottongen_reftransV1_0092017; organism=Gossypium barbadense; type=contig; length=2863bpback to top |