g.barbadense_cottongen_reftransV1_0092017, g.barbadense_cottongen_reftransV1_0092017 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A087H0U4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G031100 PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.304e-54 Identity = 95/116 (81.90%), Postives = 110/116 (94.83%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSV+C++IPLLALEYEPPRT SFKT+EASLRVDA+ASAGFKISRSKLVDLIS+GDVRVNWAT+TKNGTT+KTGD++SVSGKGRLKIGEIN TKKGKF+VE+IRYL Sbjct: 200 FIVSALDKVGNVSVTCSKIPLLALEYEPPRTNSFKTVEASLRVDAVASAGFKISRSKLVDLISSGDVRVNWATITKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKFAVEIIRYL 315 HSP 2 Score: 99.7525 bits (247), Expect = 3.642e-35 Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 2 Query: 1112 HISQVIKGDNDVLLKGVG-DKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 ++ IKGD D LLKG+G D+S +E+KH+L+ ARR A+RREV HTDFLTP ++KES+ VL K ADV V QGGYP+ E Sbjct: 48 QVAGAIKGDVDSLLKGIGGDQSITKEIKHVLEMARRVASRREVLHTDFLTPLIVKESVSVLGKFADVTIVVQGGYPEAE 126 HSP 3 Score: 78.5666 bits (192), Expect = 3.642e-35 Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+SIGH ++LTNDP++VA +SI+G F FQ CSHGDFLGAILG GI+REKLGDI++Q Sbjct: 125 AERCRISIGHPDLLTNDPDIVAA--------------------------------LSITGYFGFQSCSHGDFLGAILGTGISREKLGDILVQ 184
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V4KJN0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011660mg PE=4 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.913e-54 Identity = 95/116 (81.90%), Postives = 110/116 (94.83%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSV+CT+IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIGEIN TKKGKFSV++IR+L Sbjct: 205 FIVSALDKVGNVSVTCTKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKFSVQIIRFL 320 HSP 2 Score: 119.398 bits (298), Expect = 1.184e-42 Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 2 Query: 1097 HTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 H+ L CH+ + IKGD D LLKGVGD++ +EVK IL+ ARRAA+RREV HTDFLTPP++KES+ VL K+ADV VAQGGYP+ E Sbjct: 47 HSALRRCHVVEAIKGDVDFLLKGVGDQAVAKEVKQILEMARRAASRREVLHTDFLTPPIVKESVSVLAKVADVTIVAQGGYPEAE 131 HSP 3 Score: 84.3445 bits (207), Expect = 1.184e-42 Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH +VLTNDP++VA +SI+GNF FQPCSHGDFLGAILG G++R+KLGDI++Q Sbjct: 130 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGAILGTGVSRDKLGDILVQ 189
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A078GMN5_BRANA (BnaA05g14690D protein OS=Brassica napus GN=BnaA05g14690D PE=4 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.838e-54 Identity = 94/116 (81.03%), Postives = 110/116 (94.83%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSV+C++IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIGEIN TKKGK++VE+IRYL Sbjct: 203 FIVSALDKVGNVSVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKYAVEIIRYL 318 HSP 2 Score: 120.939 bits (302), Expect = 4.305e-42 Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 2 Query: 1058 SSRVTSYLKF*NAHTGL------------CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +S +SYL + HT L CH+++ +KGD +++LKGVGD++ +EVKHIL+ ARRA +RREV HTDFLTPPV+KES+ VL KLADV VAQGGYP+ E Sbjct: 22 ASSSSSYLHPTHNHTVLPWSPLRHSALRRCHVAEAMKGDVELVLKGVGDQAVAKEVKHILEMARRATSRREVLHTDFLTPPVVKESVSVLGKLADVAVVAQGGYPEAE 129 HSP 3 Score: 80.8777 bits (198), Expect = 4.305e-42 Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH +VLTNDP++VA +SI+GNF FQ CSHGDFLGAILG GI R+KLGDI++Q Sbjct: 128 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQACSHGDFLGAILGTGITRDKLGDILIQ 187
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0D3CQC8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.877e-54 Identity = 94/116 (81.03%), Postives = 110/116 (94.83%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSV+C++IPLLALEYEPPRT +FKTIEASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIGEIN TKKGK++VE+IRYL Sbjct: 204 FIVTALDKVGNVSVTCSKIPLLALEYEPPRTNTFKTIEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKYAVEIIRYL 319 HSP 2 Score: 120.939 bits (302), Expect = 4.165e-42 Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 2 Query: 1109 CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 CH+++ +KGD ++LLKGVGD++ +EVKHIL+ ARRA +RREV HTDFLTPPV+KES+ VL KLADV VAQGGYP+ E Sbjct: 52 CHVAEAMKGDVELLLKGVGDQAVAKEVKHILEMARRATSRREVLHTDFLTPPVVKESVSVLGKLADVAVVAQGGYPEAE 130 HSP 3 Score: 80.8777 bits (198), Expect = 4.165e-42 Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH +VLTNDP++VA +SI+GNF FQ CSHGDFLGAILG GI R+KLGDI++Q Sbjct: 129 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQACSHGDFLGAILGTGITRDKLGDILIQ 188
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A067JBZ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08637 PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 6.944e-54 Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F+M L +V+NVSVSC +IPLLALEYEPPRT +FKT+E SLRVDALASAGFKISRSKLVDLISN DVRVNW T+TKN TTLKTGDI+SVSGKGRLKIGEINSTKKGKF+VELIR+L Sbjct: 208 FIMSSLDKVSNVSVSCARIPLLALEYEPPRTNTFKTVETSLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRFL 323 HSP 2 Score: 133.265 bits (334), Expect = 1.406e-46 Identity = 57/85 (67.06%), Postives = 73/85 (85.88%), Query Frame = 2 Query: 1091 NAHTGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 N+ G+CH++Q +KGD + LLKG+GD+S +EEVKHILD A+RA++RREV HTDFLTPP LKES+ +L+KLAD+K VAQGGYPQ E Sbjct: 50 NSALGICHLAQAMKGDVNDLLKGIGDRSIVEEVKHILDMAKRASSRREVLHTDFLTPPTLKESIRLLEKLADIKVVAQGGYPQAE 134 HSP 3 Score: 83.5741 bits (205), Expect = 1.406e-46 Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GH + LTNDP+++A +SI+GNF+FQ CSHGDFLGAILG GI+REK+GDIILQ Sbjct: 133 AERCRLSVGHPDTLTNDPDIIAA--------------------------------LSITGNFAFQTCSHGDFLGAILGAGISREKVGDIILQ 192
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A5B7P7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010260 PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 7.095e-54 Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSVSCT++PLLALEYE PRT +FKTIE SLRVDALASAGFK+SRSKLVDLISNGDVRVNW TVTKNGTTLKTGD++SVSGKGRLKIGEINSTKKGK++VELIR+L Sbjct: 154 FLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 269 HSP 2 Score: 134.806 bits (338), Expect = 4.105e-47 Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 2 Query: 1106 LCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +CH++Q +KGD + LLKGV D+S IE VKHIL+ A+RA+ RREV HTDFLTPPVLKESMIVL+KLAD+KAVAQGGYPQ E Sbjct: 1 MCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAE 80 HSP 3 Score: 83.5741 bits (205), Expect = 4.105e-47 Identity = 48/92 (52.17%), Postives = 53/92 (57.61%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GHSEVLT P++VA + I+GNF FQ CSHGDFLGAILG GIAREKLGDIILQ Sbjct: 79 AERCRLSVGHSEVLTTAPDIVAA--------------------------------LRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQ 138
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: R0IM21_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10009559mg PE=4 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 2.229e-53 Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 FV+ L +V NV V+CT+IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLISN DVRVNWATVTKNGT +KTGDI+SVSGKGRLKIGEIN TKKGKFSVE+IRYL Sbjct: 241 FVVSALDKVGNVGVTCTKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISNKDVRVNWATVTKNGTIVKTGDIVSVSGKGRLKIGEINETKKGKFSVEIIRYL 356 HSP 2 Score: 117.857 bits (294), Expect = 2.175e-41 Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2 Query: 1097 HTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 H+ L CH+++ IKGD D LLKGV D++ +EVK IL+ ARRAA+RRE+ HTDFLTPP++KES+ +L K ADVK VAQGGYP+ E Sbjct: 83 HSALRRCHVAEAIKGDVDFLLKGVADQAVAKEVKQILEMARRAASRRELLHTDFLTPPIVKESVSLLGKFADVKIVAQGGYPEAE 167 HSP 3 Score: 81.6481 bits (200), Expect = 2.175e-41 Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+SIGH +VL NDP++VA +SI+G F+FQPCSHGDFLGAILG GI+REKLGDI++Q Sbjct: 166 AERCRISIGHPDVLINDPDIVAA--------------------------------LSITGGFNFQPCSHGDFLGAILGTGISREKLGDILIQ 225
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: E0CSJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02610 PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 3.219e-53 Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSVSCT++PLLALEYE PRT +FKTIE SLRVDALASAGFK+SRSKLVDLISNGDVRVNW TVTKNGTTLKTGD++SVSGKGRLKIGEINSTKKGK++VELIR+L Sbjct: 206 FLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 321 HSP 2 Score: 137.887 bits (346), Expect = 5.294e-48 Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+CH++Q +KGD + LLKGV D+S IE VKHIL+ A+RA+ RREV HTDFLTPPVLKESMIVL+KLAD+KAVAQGGYPQ E Sbjct: 51 SGMCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAE 132 HSP 3 Score: 83.5741 bits (205), Expect = 5.294e-48 Identity = 48/92 (52.17%), Postives = 53/92 (57.61%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GHSEVLT P++VA + I+GNF FQ CSHGDFLGAILG GIAREKLGDIILQ Sbjct: 131 AERCRLSVGHSEVLTTAPDIVAA--------------------------------LRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQ 190
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A078INB9_BRANA (BnaC06g10090D protein OS=Brassica napus GN=BnaC06g10090D PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 3.654e-53 Identity = 93/116 (80.17%), Postives = 109/116 (93.97%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F++ L +V NVSV+C++IPLLALEYEPPRT +FKTIEASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIG IN TKKGK++VE+IRYL Sbjct: 204 FIVTALDKVGNVSVTCSKIPLLALEYEPPRTNTFKTIEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGAINETKKGKYAVEIIRYL 319 HSP 2 Score: 120.553 bits (301), Expect = 5.895e-42 Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 2 Query: 1097 HTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 H+ L CH+++ +KGD ++LLKGVGD++ +EVKHIL+ ARRA +RREV HTDFLTPPV+KES+ VL KLADV V+QGGYP+ E Sbjct: 46 HSALRRCHVAEAMKGDVELLLKGVGDQAVAKEVKHILEMARRATSRREVLHTDFLTPPVVKESVSVLGKLADVAVVSQGGYPEAE 130 HSP 3 Score: 80.8777 bits (198), Expect = 5.895e-42 Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH +VLTNDP++VA +SI+GNF FQ CSHGDFLGAILG GI R+KLGDI++Q Sbjct: 129 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQACSHGDFLGAILGTGITRDKLGDILIQ 188
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0B2R308_GLYSO (Putative RNA-binding protein ylmH OS=Glycine soja GN=glysoja_007797 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 3.752e-53 Identity = 93/116 (80.17%), Postives = 108/116 (93.10%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F+M L++V NV VSCT+IPL++L+YEPPRT+SFKTIEASLRVDALASAGFK+SRSKLVD+ISNGDVR+NW VT GTTLK+GDI+S+SGKGRLKIGEINSTKKGKF+VELIRYL Sbjct: 205 FLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 320 HSP 2 Score: 123.25 bits (308), Expect = 2.714e-43 Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+ Q +KG+ D+LLKGVG++S +EVKHIL+ ARRA+ +RE+ HTDFLTPPVLKESM VL+KLADVKA+AQGGYPQ E Sbjct: 50 SGVSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAE 131 HSP 3 Score: 82.4185 bits (202), Expect = 2.714e-43 Identity = 46/92 (50.00%), Postives = 52/92 (56.52%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+S+GH E LT+DP D I L SI+GNF F+PCSHGDFLG+ILG GI REKLGDIILQ Sbjct: 130 AERCRISVGHPEELTSDP--------------------DIISAL------------SITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQ 189 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092017 ID=g.barbadense_cottongen_reftransV1_0092017; Name=g.barbadense_cottongen_reftransV1_0092017; organism=Gossypium barbadense; type=contig; length=2863bpback to top |