g.barbadense_cottongen_reftransV1_0092017, g.barbadense_cottongen_reftransV1_0092017 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092017
Unique Name	g.barbadense_cottongen_reftransV1_0092017
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2863

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A087H0U4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G031100 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.304e-54
Identity = 95/116 (81.90%), Postives = 110/116 (94.83%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSV+C++IPLLALEYEPPRT SFKT+EASLRVDA+ASAGFKISRSKLVDLIS+GDVRVNWAT+TKNGTT+KTGD++SVSGKGRLKIGEIN TKKGKF+VE+IRYL
Sbjct:  200 FIVSALDKVGNVSVTCSKIPLLALEYEPPRTNSFKTVEASLRVDAVASAGFKISRSKLVDLISSGDVRVNWATITKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKFAVEIIRYL 315

HSP 2 Score: 99.7525 bits (247), Expect = 3.642e-35
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 2

Query: 1112 HISQVIKGDNDVLLKGVG-DKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
             ++  IKGD D LLKG+G D+S  +E+KH+L+ ARR A+RREV HTDFLTP ++KES+ VL K ADV  V QGGYP+ E
Sbjct:   48 QVAGAIKGDVDSLLKGIGGDQSITKEIKHVLEMARRVASRREVLHTDFLTPLIVKESVSVLGKFADVTIVVQGGYPEAE 126

HSP 3 Score: 78.5666 bits (192), Expect = 3.642e-35
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+SIGH ++LTNDP++VA                                 +SI+G F FQ CSHGDFLGAILG GI+REKLGDI++Q
Sbjct:  125 AERCRISIGHPDLLTNDPDIVAA--------------------------------LSITGYFGFQSCSHGDFLGAILGTGISREKLGDILVQ 184

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V4KJN0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011660mg PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.913e-54
Identity = 95/116 (81.90%), Postives = 110/116 (94.83%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSV+CT+IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIGEIN TKKGKFSV++IR+L
Sbjct:  205 FIVSALDKVGNVSVTCTKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKFSVQIIRFL 320

HSP 2 Score: 119.398 bits (298), Expect = 1.184e-42
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 2

Query: 1097 HTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            H+ L  CH+ + IKGD D LLKGVGD++  +EVK IL+ ARRAA+RREV HTDFLTPP++KES+ VL K+ADV  VAQGGYP+ E
Sbjct:   47 HSALRRCHVVEAIKGDVDFLLKGVGDQAVAKEVKQILEMARRAASRREVLHTDFLTPPIVKESVSVLAKVADVTIVAQGGYPEAE 131

HSP 3 Score: 84.3445 bits (207), Expect = 1.184e-42
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH +VLTNDP++VA                                 +SI+GNF FQPCSHGDFLGAILG G++R+KLGDI++Q
Sbjct:  130 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGAILGTGVSRDKLGDILVQ 189

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A078GMN5_BRANA (BnaA05g14690D protein OS=Brassica napus GN=BnaA05g14690D PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.838e-54
Identity = 94/116 (81.03%), Postives = 110/116 (94.83%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSV+C++IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIGEIN TKKGK++VE+IRYL
Sbjct:  203 FIVSALDKVGNVSVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKYAVEIIRYL 318

HSP 2 Score: 120.939 bits (302), Expect = 4.305e-42
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 2

Query: 1058 SSRVTSYLKF*NAHTGL------------CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            +S  +SYL   + HT L            CH+++ +KGD +++LKGVGD++  +EVKHIL+ ARRA +RREV HTDFLTPPV+KES+ VL KLADV  VAQGGYP+ E
Sbjct:   22 ASSSSSYLHPTHNHTVLPWSPLRHSALRRCHVAEAMKGDVELVLKGVGDQAVAKEVKHILEMARRATSRREVLHTDFLTPPVVKESVSVLGKLADVAVVAQGGYPEAE 129

HSP 3 Score: 80.8777 bits (198), Expect = 4.305e-42
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH +VLTNDP++VA                                 +SI+GNF FQ CSHGDFLGAILG GI R+KLGDI++Q
Sbjct:  128 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQACSHGDFLGAILGTGITRDKLGDILIQ 187

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0D3CQC8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.877e-54
Identity = 94/116 (81.03%), Postives = 110/116 (94.83%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSV+C++IPLLALEYEPPRT +FKTIEASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIGEIN TKKGK++VE+IRYL
Sbjct:  204 FIVTALDKVGNVSVTCSKIPLLALEYEPPRTNTFKTIEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKYAVEIIRYL 319

HSP 2 Score: 120.939 bits (302), Expect = 4.165e-42
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 2

Query: 1109 CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            CH+++ +KGD ++LLKGVGD++  +EVKHIL+ ARRA +RREV HTDFLTPPV+KES+ VL KLADV  VAQGGYP+ E
Sbjct:   52 CHVAEAMKGDVELLLKGVGDQAVAKEVKHILEMARRATSRREVLHTDFLTPPVVKESVSVLGKLADVAVVAQGGYPEAE 130

HSP 3 Score: 80.8777 bits (198), Expect = 4.165e-42
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH +VLTNDP++VA                                 +SI+GNF FQ CSHGDFLGAILG GI R+KLGDI++Q
Sbjct:  129 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQACSHGDFLGAILGTGITRDKLGDILIQ 188

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A067JBZ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08637 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.944e-54
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F+M  L +V+NVSVSC +IPLLALEYEPPRT +FKT+E SLRVDALASAGFKISRSKLVDLISN DVRVNW T+TKN TTLKTGDI+SVSGKGRLKIGEINSTKKGKF+VELIR+L
Sbjct:  208 FIMSSLDKVSNVSVSCARIPLLALEYEPPRTNTFKTVETSLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRFL 323

HSP 2 Score: 133.265 bits (334), Expect = 1.406e-46
Identity = 57/85 (67.06%), Postives = 73/85 (85.88%), Query Frame = 2

Query: 1091 NAHTGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            N+  G+CH++Q +KGD + LLKG+GD+S +EEVKHILD A+RA++RREV HTDFLTPP LKES+ +L+KLAD+K VAQGGYPQ E
Sbjct:   50 NSALGICHLAQAMKGDVNDLLKGIGDRSIVEEVKHILDMAKRASSRREVLHTDFLTPPTLKESIRLLEKLADIKVVAQGGYPQAE 134

HSP 3 Score: 83.5741 bits (205), Expect = 1.406e-46
Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCRLS+GH + LTNDP+++A                                 +SI+GNF+FQ CSHGDFLGAILG GI+REK+GDIILQ
Sbjct:  133 AERCRLSVGHPDTLTNDPDIIAA--------------------------------LSITGNFAFQTCSHGDFLGAILGAGISREKVGDIILQ 192

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A5B7P7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010260 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.095e-54
Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSVSCT++PLLALEYE PRT +FKTIE SLRVDALASAGFK+SRSKLVDLISNGDVRVNW TVTKNGTTLKTGD++SVSGKGRLKIGEINSTKKGK++VELIR+L
Sbjct:  154 FLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 269

HSP 2 Score: 134.806 bits (338), Expect = 4.105e-47
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 2

Query: 1106 LCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            +CH++Q +KGD + LLKGV D+S IE VKHIL+ A+RA+ RREV HTDFLTPPVLKESMIVL+KLAD+KAVAQGGYPQ E
Sbjct:    1 MCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAE 80

HSP 3 Score: 83.5741 bits (205), Expect = 4.105e-47
Identity = 48/92 (52.17%), Postives = 53/92 (57.61%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCRLS+GHSEVLT  P++VA                                 + I+GNF FQ CSHGDFLGAILG GIAREKLGDIILQ
Sbjct:   79 AERCRLSVGHSEVLTTAPDIVAA--------------------------------LRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQ 138

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: R0IM21_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10009559mg PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.229e-53
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            FV+  L +V NV V+CT+IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLISN DVRVNWATVTKNGT +KTGDI+SVSGKGRLKIGEIN TKKGKFSVE+IRYL
Sbjct:  241 FVVSALDKVGNVGVTCTKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISNKDVRVNWATVTKNGTIVKTGDIVSVSGKGRLKIGEINETKKGKFSVEIIRYL 356

HSP 2 Score: 117.857 bits (294), Expect = 2.175e-41
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 2

Query: 1097 HTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            H+ L  CH+++ IKGD D LLKGV D++  +EVK IL+ ARRAA+RRE+ HTDFLTPP++KES+ +L K ADVK VAQGGYP+ E
Sbjct:   83 HSALRRCHVAEAIKGDVDFLLKGVADQAVAKEVKQILEMARRAASRRELLHTDFLTPPIVKESVSLLGKFADVKIVAQGGYPEAE 167

HSP 3 Score: 81.6481 bits (200), Expect = 2.175e-41
Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+SIGH +VL NDP++VA                                 +SI+G F+FQPCSHGDFLGAILG GI+REKLGDI++Q
Sbjct:  166 AERCRISIGHPDVLINDPDIVAA--------------------------------LSITGGFNFQPCSHGDFLGAILGTGISREKLGDILIQ 225

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: E0CSJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02610 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.219e-53
Identity = 96/116 (82.76%), Postives = 108/116 (93.10%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSVSCT++PLLALEYE PRT +FKTIE SLRVDALASAGFK+SRSKLVDLISNGDVRVNW TVTKNGTTLKTGD++SVSGKGRLKIGEINSTKKGK++VELIR+L
Sbjct:  206 FLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 321

HSP 2 Score: 137.887 bits (346), Expect = 5.294e-48
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 2

Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            +G+CH++Q +KGD + LLKGV D+S IE VKHIL+ A+RA+ RREV HTDFLTPPVLKESMIVL+KLAD+KAVAQGGYPQ E
Sbjct:   51 SGMCHLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAE 132

HSP 3 Score: 83.5741 bits (205), Expect = 5.294e-48
Identity = 48/92 (52.17%), Postives = 53/92 (57.61%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCRLS+GHSEVLT  P++VA                                 + I+GNF FQ CSHGDFLGAILG GIAREKLGDIILQ
Sbjct:  131 AERCRLSVGHSEVLTTAPDIVAA--------------------------------LRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQ 190

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A078INB9_BRANA (BnaC06g10090D protein OS=Brassica napus GN=BnaC06g10090D PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.654e-53
Identity = 93/116 (80.17%), Postives = 109/116 (93.97%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NVSV+C++IPLLALEYEPPRT +FKTIEASLR+DA+ASAGFKISRSKLVDLIS+GDVRVNWATVTKNGTT+KTGD++SVSGKGRLKIG IN TKKGK++VE+IRYL
Sbjct:  204 FIVTALDKVGNVSVTCSKIPLLALEYEPPRTNTFKTIEASLRIDAVASAGFKISRSKLVDLISSGDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGAINETKKGKYAVEIIRYL 319

HSP 2 Score: 120.553 bits (301), Expect = 5.895e-42
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 2

Query: 1097 HTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            H+ L  CH+++ +KGD ++LLKGVGD++  +EVKHIL+ ARRA +RREV HTDFLTPPV+KES+ VL KLADV  V+QGGYP+ E
Sbjct:   46 HSALRRCHVAEAMKGDVELLLKGVGDQAVAKEVKHILEMARRATSRREVLHTDFLTPPVVKESVSVLGKLADVAVVSQGGYPEAE 130

HSP 3 Score: 80.8777 bits (198), Expect = 5.895e-42
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH +VLTNDP++VA                                 +SI+GNF FQ CSHGDFLGAILG GI R+KLGDI++Q
Sbjct:  129 AERCRISVGHPDVLTNDPDIVAA--------------------------------LSITGNFGFQACSHGDFLGAILGTGITRDKLGDILIQ 188

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0B2R308_GLYSO (Putative RNA-binding protein ylmH OS=Glycine soja GN=glysoja_007797 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.752e-53
Identity = 93/116 (80.17%), Postives = 108/116 (93.10%), Query Frame = 2

Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F+M  L++V NV VSCT+IPL++L+YEPPRT+SFKTIEASLRVDALASAGFK+SRSKLVD+ISNGDVR+NW  VT  GTTLK+GDI+S+SGKGRLKIGEINSTKKGKF+VELIRYL
Sbjct:  205 FLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 320

HSP 2 Score: 123.25 bits (308), Expect = 2.714e-43
Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 2

Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            +G+    Q +KG+ D+LLKGVG++S  +EVKHIL+ ARRA+ +RE+ HTDFLTPPVLKESM VL+KLADVKA+AQGGYPQ E
Sbjct:   50 SGVSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAE 131

HSP 3 Score: 82.4185 bits (202), Expect = 2.714e-43
Identity = 46/92 (50.00%), Postives = 52/92 (56.52%), Query Frame = 3

Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH E LT+DP                    D I  L            SI+GNF F+PCSHGDFLG+ILG GI REKLGDIILQ
Sbjct:  130 AERCRISVGHPEELTSDP--------------------DIISAL------------SITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQ 189

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A087H0U4_ARAAL	2.304e-54	81.90	Uncharacterized protein OS=Arabis alpina GN=AALP_A...	[more]
V4KJN0_EUTSA	2.913e-54	81.90	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
A0A078GMN5_BRANA	3.838e-54	81.03	BnaA05g14690D protein OS=Brassica napus GN=BnaA05g...	[more]
A0A0D3CQC8_BRAOL	5.877e-54	81.03	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
A0A067JBZ7_JATCU	6.944e-54	83.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A5B7P7_VITVI	7.095e-54	82.76	Putative uncharacterized protein OS=Vitis vinifera...	[more]
R0IM21_9BRAS	2.229e-53	83.62	Uncharacterized protein (Fragment) OS=Capsella rub...	[more]
E0CSJ2_VITVI	3.219e-53	82.76	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A078INB9_BRANA	3.654e-53	80.17	BnaC06g10090D protein OS=Brassica napus GN=BnaC06g...	[more]
A0A0B2R308_GLYSO	3.752e-53	80.17	Putative RNA-binding protein ylmH OS=Glycine soja ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..147
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.519
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092017 ID=g.barbadense_cottongen_reftransV1_0092017; Name=g.barbadense_cottongen_reftransV1_0092017; organism=Gossypium barbadense; type=contig; length=2863bp
CAATATCCGCTGAGAAGTTCAGGTTTTTTATTTTGTTATGAATTTTTTCT
TCTTTTTTATCTATATATATATATTTGTGATAGTTGTATAAATAGAGATA
CCCATGGAGCTAAATTAGAAGATTTTCTATTTATTTTGAAGTAATCTTGT
GCAATTAGAGATACCCTTTATGCTAAAGTTAAAGAATTTGCAAATATCTT
TTGTTAGTTTTGAGGTATAGAGATGCCCATTTAGCCAGAGAAAAAAATAT
TTACATTTACCTCTTCTTAACATTCTTGGTTTATTTTGAAGTAATATTGT
GTAATTATAGACAAACATTGATAAAAGGGAGGAATTTGAGCAATTTTCTT
TGTTAGTTTTGTTATAATCGTGGATTAATTTGAGACACCCATTAAGCTGA
ATTAGGAGAATCTAGTAAGCGCATCTGAAAAAAAAAAGTATTGAAGGAAC
TAAAATGCTTGAGATTATAACAATGTTGTCACTCAAATGAACTTGTAAGT
CAGTTATATTACTCTTATCAGGAAAAAAAAGAGATGCTTCTTTTTACTAA
AAGGTTTGTTTAGATTTCGGATGGTTTTATGTCAGGGATTCCATCCAGGG
ATGAAGCATGCACTGCAACTCGTATCATTATGTAGACGTTTTACCTCCGA
GTGAAATATGCCAATTATTTCAAATGCATTTTGTTAAGGAAGAATGAATG
CTTGTTAACCTCAGCTCGATATCAAAATATATTGCCATCCTTAATGAATG
CACACCTAGGGCATTGACCACAATTCCAATTCAACTTTTTATTATTCCTA
GAACTAGAGTCTATACACAAGAGAACTTATAGTAGTAGTTGTTTCTTAGA
ATTATCAATTTATCACAAAGTTATTGAACATTAAACATATGCAATAGCCA
CCATTACCATGGCTGCTGAACCTGTACTTTAGCATTGTTAGTAAGCTGTA
GGATTAACTTCTGCAGAGTCCAGCTTCTTCAACTTTTTCAATTGTTTTTT
TGCCATATGTACATGTTTCAGCAAATGGGATGTATGCATATACAACAGTG
CTGATTTTCTAGTCGAGTAACATCCTATTTAAAATTTTGAAATGCACACA
CAGGGTTATGTCACATTTCCCAAGTTATAAAGGGGGATAATGATGTTTTA
CTTAAAGGAGTGGGAGATAAGAGTGCTATCGAAGAAGTGAAACATATACT
TGATACGGCTAGACGTGCAGCAACCAGAAGAGAGGTATTCCATACAGATT
TTCTAACCCCACCAGTATTAAAGGAGTCCATGATTGTTCTGCAAAAACTG
GCTGATGTTAAGGCAGTTGCACAGGGGGGGTATCCTCAGGTTGAACCAAA
TGGATTCAGTTTACTTCTCCTTCATTGATTTCTTTGGTTATACAAGTTGA
TGAATCTCCGTGATCCTTTAGGCTGAGCGTTGCCGTCTTTCTATTGGACA
TTCAGAAGTATTGACCAATGATCCTAATGTAGTTGCAATAATAAAGTAAG
TAATATCCTTCATTGTCAAGAGCTGGTGACTGCTTGACAGGATTGAAACT
CTGAATCAAGATATATGCATATTTGGTTTTTTCTTTGTCAGTATCTCGGG
AAACTTCAGCTTTCAACCTTGTTCTCATGGTGACTTCCTTGGTGCAATTC
TTGGTAAAGGTATTGCTAGAGAGAAGCTTGGGGATATTATCTTGCAGGTA
TTCAGATGGTCAATTGCGGATTAGGCAATTTAGAACTTGGGTTTACTTTA
AAAGCCCTGGTTTAATTTCTTTCATTAAGATCATTTATACCTGCCTCCTA
AACCAGCAAAGAAGTTTTCTCTGCGTCTAATATATTACCAGGCTGTAACC
TATGTTGACTGTTAACTAGGGAGAAAAGGGAGCTCATGTCCTGATTGTTC
CTGAACTCGTTGACTTTCTTATGTCGACACTGGACAAGGTGAACTTTTTT
CCCCTTGGATACACTCAATGACTGCAATAATTTTAAATTTAAATTTTTTT
CCACTTTTTCGGGTAACAGTAACAGCATTATCACAGTAACCTTGCAGTGA
AATTTTTATTCTTGCACACTGTTAGTATCACATTAAAATCAATATATTGT
CTGTCATATTTGTTTGTTTTTAGTGGTAAATAACACTCACATTCTTGTAA
TGTCTGTAACGGTTATGGAGTCTCCAAAGGCATGAGCTAATCTTGCCGTA
TTGCAGTAAAAAGAATTGTGGGTGAAATCCTCTCCAACTCTTTTTGTTAT
GTGTTTCCTTTTGCAGGTTGCTAATGTATCAGTATCATGTACACAGATAC
CTCTGCTTGCACTTGAATATGAGCCACCAAGGACGCAGTCATTCAAAACC
ATAGAAGCATCGCTTCGTGTTGATGCTCTTGCTAGTGCAGGATTTAAGAT
TTCTAGATCTAAACTAGTTGATTTGATAAGCAACGGAGATGTACGCGTAA
ATTGGGCAACTGTAACAAAAAATGGAACAACTCTCAAGACCGGTGACATT
ATCTCTGTTAGTGGGAAAGGAAGACTAAAGATTGGAGAAATTAACAGTAC
AAAGAAGGGAAAGTTTTCTGTGGAACTCATTCGGTATTTGTAGGGTTAGC
AATTGAGTAAAAGGATGATGGAGTTTAGGCAATTGAGGATACACATTGTG
ATGTTTCTAACTAAACAAGGGATTCTCAAATATCAGAAGCCATAGAAAAG
AAAAAAAGGAATTACATTACAAGGAGTCTGGCTAATGTATCAAAGCTGTG
AATTCCAAGACAAATGCCAGCTTCTTGCATGGCATCTGAGGGTCATAGGA
AAACTCATCACTTGAGTGCATTAGAGGCATCCAGAATATTCATATAACTT
TTTTATTAGTCAA

Search form

g.barbadense_cottongen_reftransV1_0092017, g.barbadense_cottongen_reftransV1_0092017 (contig) Gossypium barbadense

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