g.barbadense_cottongen_reftransV1_0092016, g.barbadense_cottongen_reftransV1_0092016 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: CSR1_YEAST (Phosphatidylinositol transfer protein CSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSR1 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.571e-12 Identity = 57/212 (26.89%), Postives = 95/212 (44.81%), Query Frame = -2 Query: 486 DACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAV--EGETGKVYRANF-------HDRDGRTVLILRPGKQNTTSLDNQL--RHLVYMIENAILNLPED-QEQMVWLIDFTGWSLSTS--VPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGK 1079 DA + +++ AR WN DK+ ML L WR + I E AV ETG + +D D R V+++RP +++ Q + + +IE + L E+ L D G+S+S P+K I + HYPE L +++ P IF W I+K +LD K+ F ++++ + + + +P GG+ Sbjct: 109 DATILKFIRARKWNADKTIAMLGHDLYWRKDTINKIINGGERAVYENNETGVIKNLELQKATIQGYDNDMRPVILVRPRLHHSSDQTEQELEKFSLLVIEQSKLFFKENYPASTTILFDLNGFSMSNMDYAPVKFL---ITCFEAHYPESLGHLLIHKAPWIFNPIWNIIKNWLDPVVASKIVFT-----KNIDELHKFIQPQYIPRYLGGE 312
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: YN02_CAEEL (CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=3 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 3.358e-12 Identity = 61/248 (24.60%), Postives = 117/248 (47.18%), Query Frame = -2 Query: 468 ESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI--RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGKQNT------TSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSAR-----------DTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYN 1148 ES++ E++ +L+ + K DA L R+L AR+++V K+K M+ ++ WR + ++I W V + + +H D+ GR + ILR G+ +T ++N ++ + + E+ + E ++ I + WSL + S R I +++ +YPE + ++ PR+F W ++ F+D KT +K + E +R + +E+ +P DF G + L N Sbjct: 256 ESRLCEIKYSLQ--AHHKGKLPNDAHLLRFLRARDFDVAKAKDMVHASIIWRKQHNVDKILEEWTRPTV---IKQYFPGCWHNSDKAGRPMYILRFGQLDTKGMLRSCGVENLVKLTLSICEDGLQRAAEATRKLGTPI--SSWSLVVDLDGLSMRHLWRPGVQCLLKIIEIVEANYPETMGQVLVVRAPRVFPVLWTLISPFIDEKTRKKFMVSGGSGGDLKEELRKHIEEKFIP-DFLGGSCLTTN 495
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: SEC14_CANAL (SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.176e-12 Identity = 62/218 (28.44%), Postives = 100/218 (45.87%), Query Frame = -2 Query: 489 DACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI----RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGKQN------TTSLDNQLRHLVYMIENAI-LNLPEDQEQMVWLI-------DFTGWSLSTSV-PIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGG 1079 DA L R+L AR +++ K+ M KWR + I + E + K+Y +H D+DGR V GK + T+ + L++LV+ E LP + +L+ D +G S++++ I R+ + Q++YPER+ L N P F +K+ K FLD T K+ + K+ EL++ +NLP FGG Sbjct: 55 DASLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPI---VAKMYPTYYHKTDKDGRPVYFEELGKVDLVKMLKITTQERMLKNLVWEYEAMCQYRLPACSRKAGYLVETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLFKPFLDPVTVSKIHILGYSYKK--ELLKQ-IPPQNLPVKFGG 266
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: SFH11_ARATH (Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana GN=SFH11 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.973e-11 Identity = 69/250 (27.60%), Postives = 111/250 (44.40%), Query Frame = -2 Query: 483 NQQNDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI-RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGKQNTTSLDNQL---RHLVYMIEN---------AILNLPEDQE--QMVWLIDFTGWSLST-SVPIKSARDTINVL-QNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKA 1175 N++ S +E V+ R L K+ LRR+L+ R+++++KSK+ +KWR YK + I + + GE K Y FH D+ GR + I R G + + R++ Y I+ ++ D+ ++D +G +S S P +S I + N+YPE L + N F W +K FLDA+T KV+ + P EL+ + + NLPT GG Sbjct: 16 NKEEQSPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYKVDLISQKFKFEEYGEVKKHYPHGFHKVDKTGRPIYIERLGMTDLNAFLKATTIERYVNYHIKEQEKTMSLRYPACSIASDKHVSSTTTILDVSGVGMSNFSKPARSLFMEIQKIDSNYYPETLHRLFVVNASSGFRMLWLALKTFLDARTLAKVQVLGPNYLG--ELLEA-IEPSNLPTFLGGNC 262
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: SFH6_ARATH (Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 OS=Arabidopsis thaliana GN=SFH6 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.227e-11 Identity = 63/218 (28.90%), Postives = 97/218 (44.50%), Query Frame = -2 Query: 489 LRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI----RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGK------QNTTSLDNQLRHLVYMIENA-ILNLPEDQ-------EQMVWLIDFTGWSLSTSVPIKSARDTINVLQ----NHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGG 1070 + R+L+AR ++++K+K M + ++WR + + I ++ EI E K Y +H D++GR V I R GK T+LD +R+ V E + +L P + ++D G L KSAR+ I LQ ++YPE L + N F W VK FLD KT K+ + K + + D LP GG Sbjct: 109 MLRFLKARKFDIEKAKHMWADMIQWRKEFGTDTIIQDFQFEEI---DEVLKYYPHGYHSVDKEGRPVYIERLGKVDPNKLMQVTTLDRYIRYHVKEFERSFMLKFPACTIAAKKYIDSSTTILDVQGVGLKNFT--KSARELITRLQKIDGDNYPETLHQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGCKYQSK---LLEIIDSSELPEFLGG 318
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: A0A0B2QLB5_GLYSO (Random slug protein 5 OS=Glycine soja GN=glysoja_009292 PE=4 SV=1) HSP 1 Score: 450.669 bits (1158), Expect = 3.387e-151 Identity = 206/284 (72.54%), Postives = 241/284 (84.86%), Query Frame = -2 Query: 357 MFSRWSHSHHNQQNDS-LQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEI 1205 MF RWS+SH Q S L ESK+KEL+ + PLS R L YCTDAC +RYLEARNWNVDKSKKMLEETL+WRSTYKPEEIRWHE+A+EGETGK+YRA+FHDR GRTVLILRPG QNTTS++NQLRHLVY++ENA+LNLP QEQM WLIDFTGWS++ +VP+K AR+TIN+LQNHYPERLA+A LYNPPR+FEAFWKIVKYFLD KTFQKVKFVYP NK+SV++M+SYFDEENLP + GGK+I+ YNHEEFS+ MVQDD+K A WG D KL + N + + Sbjct: 1 MFHRWSNSHQQDQGSSELYAESKIKELKGVIGPLSGRSLTYCTDACFKRYLEARNWNVDKSKKMLEETLRWRSTYKPEEIRWHEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTTSMENQLRHLVYLLENAMLNLPPGQEQMSWLIDFTGWSITNNVPLKLARETINILQNHYPERLAIAFLYNPPRVFEAFWKIVKYFLDNKTFQKVKFVYPNNKDSVQVMKSYFDEENLPKELGGKSIMSYNHEEFSRLMVQDDLKCAAFWGSDGKLSNHIVNGNSASV 284
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: I1M8D3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 450.669 bits (1158), Expect = 3.387e-151 Identity = 206/284 (72.54%), Postives = 241/284 (84.86%), Query Frame = -2 Query: 357 MFSRWSHSHHNQQNDS-LQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEI 1205 MF RWS+SH Q S L ESK+KEL+ + PLS R L YCTDAC +RYLEARNWNVDKSKKMLEETL+WRSTYKPEEIRWHE+A+EGETGK+YRA+FHDR GRTVLILRPG QNTTS++NQLRHLVY++ENA+LNLP QEQM WLIDFTGWS++ +VP+K AR+TIN+LQNHYPERLA+A LYNPPR+FEAFWKIVKYFLD KTFQKVKFVYP NK+SV++M+SYFDEENLP + GGK+I+ YNHEEFS+ MVQDD+K A WG D KL + N + + Sbjct: 1 MFHRWSNSHQQDQGSSELYAESKIKELKGVIGPLSGRSLTYCTDACFKRYLEARNWNVDKSKKMLEETLRWRSTYKPEEIRWHEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTTSMENQLRHLVYLLENAMLNLPPGQEQMSWLIDFTGWSITNNVPLKLARETINILQNHYPERLAIAFLYNPPRVFEAFWKIVKYFLDNKTFQKVKFVYPNNKDSVQVMKSYFDEENLPKELGGKSIMSYNHEEFSRLMVQDDLKCAAFWGSDGKLSNHIVNGNSASV 284
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: I3SNJ8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 449.129 bits (1154), Expect = 1.853e-150 Identity = 209/295 (70.85%), Postives = 242/295 (82.03%), Query Frame = -2 Query: 321 MFSRWSHSHHNQQNDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEITPEPICLAPAAS 1205 MF+ W S +QQN ESK+KEL+ A+ PLS LKYCTDACL+RYLEARNWNVDKSKKML+ TLKWRS YKPEEIRW E+AVEGETGK+YRA FHDR GRTVLILRPG QNT+S+DNQ++HLVY++ENA+LNLP QEQM WLIDFTGWS++ +VP KSAR+TI +LQNHYPERL +A LYNPPRIFEAFWKIVKYFLD KTF KVKFVYPKNK+SVELMRSYFD+ENLP++ GGK+IL YNHEEFSK M QDD+K A WG D KL++ E+ PEP+C A+ Sbjct: 1 MFNLWGGSQQDQQNKEAYAESKIKELKLAIGPLSGHDLKYCTDACLKRYLEARNWNVDKSKKMLKGTLKWRSVYKPEEIRWDEVAVEGETGKMYRAGFHDRQGRTVLILRPGMQNTSSIDNQIKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSITNNVPPKSARETIGILQNHYPERLGIAFLYNPPRIFEAFWKIVKYFLDNKTFHKVKFVYPKNKDSVELMRSYFDDENLPSELGGKSILNYNHEEFSKIMAQDDLKCADYWGTDEKLRN--HRHCAAEVAPEPVCSETPAT 293
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: D7SPE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01720 PE=4 SV=1) HSP 1 Score: 447.588 bits (1150), Expect = 7.585e-150 Identity = 213/295 (72.20%), Postives = 247/295 (83.73%), Query Frame = -2 Query: 321 MFSRWSHSHHNQQNDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEITPEPICLAPAAS 1205 MF R SH++++NDSLQ +KV ELRAAL PLS R L+YCTDACL RYLEARNWNVDK+KKMLEETLKWR+TYKPEEIRWHE+A EGETGKV RA+FHDR GRTVLI+RPG QNTTS +N +RHLVY+IEN+ILNL E QEQM WLIDFTGWSL+T+VPIK+ARD IN+LQNHYPERLA+ +LYNPPRIF AFWK+VKYFLD KTFQKVKFVYPKNKES+E+M+S FD ENLP +FGGKA L+Y+HEEFS+ M +DD+K+A+ WG D+K SG E P LAP AS Sbjct: 1 MFRR-RQSHNHEENDSLQRGAKVSELRAALGPLSGRSLQYCTDACLVRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWHEVAHEGETGKVSRADFHDRLGRTVLIMRPGMQNTTSAENNIRHLVYLIENSILNLREGQEQMSWLIDFTGWSLNTNVPIKTARDIINILQNHYPERLAICILYNPPRIFVAFWKVVKYFLDPKTFQKVKFVYPKNKESLEVMKSLFDVENLPGEFGGKATLKYDHEEFSRMMAEDDVKTASYWGLDSKPCHVTNGYSGAETMP----LAPPAS 290
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: R0GE21_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021373mg PE=4 SV=1) HSP 1 Score: 447.203 bits (1149), Expect = 1.326e-149 Identity = 216/298 (72.48%), Postives = 251/298 (84.23%), Query Frame = -2 Query: 330 MFSRWSHSHHNQQ--NDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGF----DNKLQSTGTNQSGPEITPEPICLAP 1205 MF RW +S +Q N+S E+K+KEL+A L LS R YC+DACL+RYLEARNWNV K+KKMLEETLKWRST+KPEEIRW E++ EGETGKVY+A FHDR GRTVLILRPG QNT SLD Q++HLVY+IENAILNLPEDQEQM WLIDFT WS+STSVPIKSAR+TIN+LQNHYPERLA+A LYNPPR+FEAFWKIVKYF+DAKTF KVKFVYPKN ESVELM S+FDEENLPT+FGGKA+L+YN+EEFSKQM Q+D+K+A WG +N+LQ++ SG EI+PEPI P Sbjct: 1 MF-RWKNSSQTEQEHNESALREAKIKELKALLGQLSGRSSLYCSDACLKRYLEARNWNVVKAKKMLEETLKWRSTFKPEEIRWDEVSGEGETGKVYKAGFHDRHGRTVLILRPGLQNTKSLDKQMKHLVYLIENAILNLPEDQEQMSWLIDFTNWSMSTSVPIKSARETINILQNHYPERLAVAFLYNPPRLFEAFWKIVKYFIDAKTFVKVKFVYPKNPESVELMSSFFDEENLPTEFGGKALLQYNYEEFSKQMNQEDVKTANFWGLIHRNNNQLQAS-NGFSGAEISPEPIQTNP 296 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092016 ID=g.barbadense_cottongen_reftransV1_0092016; Name=g.barbadense_cottongen_reftransV1_0092016; organism=Gossypium barbadense; type=contig; length=1941bpback to top |