g.barbadense_cottongen_reftransV1_0092016, g.barbadense_cottongen_reftransV1_0092016 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092016
Unique Nameg.barbadense_cottongen_reftransV1_0092016
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1941
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: CSR1_YEAST (Phosphatidylinositol transfer protein CSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSR1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.571e-12
Identity = 57/212 (26.89%), Postives = 95/212 (44.81%), Query Frame = -2
Query:  486 DACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAV--EGETGKVYRANF-------HDRDGRTVLILRPGKQNTTSLDNQL--RHLVYMIENAILNLPED-QEQMVWLIDFTGWSLSTS--VPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGK 1079
            DA + +++ AR WN DK+  ML   L WR     + I   E AV    ETG +            +D D R V+++RP   +++    Q   +  + +IE + L   E+       L D  G+S+S     P+K     I   + HYPE L   +++  P IF   W I+K +LD     K+ F      ++++ +  +   + +P   GG+
Sbjct:  109 DATILKFIRARKWNADKTIAMLGHDLYWRKDTINKIINGGERAVYENNETGVIKNLELQKATIQGYDNDMRPVILVRPRLHHSSDQTEQELEKFSLLVIEQSKLFFKENYPASTTILFDLNGFSMSNMDYAPVKFL---ITCFEAHYPESLGHLLIHKAPWIFNPIWNIIKNWLDPVVASKIVFT-----KNIDELHKFIQPQYIPRYLGGE 312          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: YN02_CAEEL (CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.358e-12
Identity = 61/248 (24.60%), Postives = 117/248 (47.18%), Query Frame = -2
Query:  468 ESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI--RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGKQNT------TSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSAR-----------DTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYN 1148
            ES++ E++ +L+  +    K   DA L R+L AR+++V K+K M+  ++ WR  +  ++I   W    V     + +   +H  D+ GR + ILR G+ +T        ++N ++  + + E+ +    E   ++   I  + WSL   +   S R             I +++ +YPE +   ++   PR+F   W ++  F+D KT +K         +  E +R + +E+ +P DF G + L  N
Sbjct:  256 ESRLCEIKYSLQ--AHHKGKLPNDAHLLRFLRARDFDVAKAKDMVHASIIWRKQHNVDKILEEWTRPTV---IKQYFPGCWHNSDKAGRPMYILRFGQLDTKGMLRSCGVENLVKLTLSICEDGLQRAAEATRKLGTPI--SSWSLVVDLDGLSMRHLWRPGVQCLLKIIEIVEANYPETMGQVLVVRAPRVFPVLWTLISPFIDEKTRKKFMVSGGSGGDLKEELRKHIEEKFIP-DFLGGSCLTTN 495          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: SEC14_CANAL (SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.176e-12
Identity = 62/218 (28.44%), Postives = 100/218 (45.87%), Query Frame = -2
Query:  489 DACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI----RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGKQN------TTSLDNQLRHLVYMIENAI-LNLPEDQEQMVWLI-------DFTGWSLSTSV-PIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGG 1079
            DA L R+L AR +++ K+  M     KWR  +    I     + E  +     K+Y   +H  D+DGR V     GK +       T+ +  L++LV+  E      LP    +  +L+       D +G S++++   I   R+   + Q++YPER+    L N P  F   +K+ K FLD  T  K+  +    K+  EL++     +NLP  FGG
Sbjct:   55 DASLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPI---VAKMYPTYYHKTDKDGRPVYFEELGKVDLVKMLKITTQERMLKNLVWEYEAMCQYRLPACSRKAGYLVETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLFKPFLDPVTVSKIHILGYSYKK--ELLKQ-IPPQNLPVKFGG 266          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: SFH11_ARATH (Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana GN=SFH11 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.973e-11
Identity = 69/250 (27.60%), Postives = 111/250 (44.40%), Query Frame = -2
Query:  483 NQQNDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI-RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGKQNTTSLDNQL---RHLVYMIEN---------AILNLPEDQE--QMVWLIDFTGWSLST-SVPIKSARDTINVL-QNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKA 1175
            N++  S  +E  V+  R  L        K+     LRR+L+ R+++++KSK+     +KWR  YK + I +  +    GE  K Y   FH  D+ GR + I R G  +  +        R++ Y I+             ++  D+       ++D +G  +S  S P +S    I  +  N+YPE L    + N    F   W  +K FLDA+T  KV+ + P      EL+ +  +  NLPT  GG  
Sbjct:   16 NKEEQSPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYKVDLISQKFKFEEYGEVKKHYPHGFHKVDKTGRPIYIERLGMTDLNAFLKATTIERYVNYHIKEQEKTMSLRYPACSIASDKHVSSTTTILDVSGVGMSNFSKPARSLFMEIQKIDSNYYPETLHRLFVVNASSGFRMLWLALKTFLDARTLAKVQVLGPNYLG--ELLEA-IEPSNLPTFLGGNC 262          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Match: SFH6_ARATH (Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 OS=Arabidopsis thaliana GN=SFH6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.227e-11
Identity = 63/218 (28.90%), Postives = 97/218 (44.50%), Query Frame = -2
Query:  489 LRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEI----RWHEIAVEGETGKVYRANFH--DRDGRTVLILRPGK------QNTTSLDNQLRHLVYMIENA-ILNLPEDQ-------EQMVWLIDFTGWSLSTSVPIKSARDTINVLQ----NHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGG 1070
            + R+L+AR ++++K+K M  + ++WR  +  + I    ++ EI    E  K Y   +H  D++GR V I R GK         T+LD  +R+ V   E + +L  P          +    ++D  G  L      KSAR+ I  LQ    ++YPE L    + N    F   W  VK FLD KT  K+  +  K +     +    D   LP   GG
Sbjct:  109 MLRFLKARKFDIEKAKHMWADMIQWRKEFGTDTIIQDFQFEEI---DEVLKYYPHGYHSVDKEGRPVYIERLGKVDPNKLMQVTTLDRYIRYHVKEFERSFMLKFPACTIAAKKYIDSSTTILDVQGVGLKNFT--KSARELITRLQKIDGDNYPETLHQMFIINAGPGFRLLWSTVKSFLDPKTTSKIHVLGCKYQSK---LLEIIDSSELPEFLGG 318          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: A0A0B2QLB5_GLYSO (Random slug protein 5 OS=Glycine soja GN=glysoja_009292 PE=4 SV=1)

HSP 1 Score: 450.669 bits (1158), Expect = 3.387e-151
Identity = 206/284 (72.54%), Postives = 241/284 (84.86%), Query Frame = -2
Query:  357 MFSRWSHSHHNQQNDS-LQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEI 1205
            MF RWS+SH   Q  S L  ESK+KEL+  + PLS R L YCTDAC +RYLEARNWNVDKSKKMLEETL+WRSTYKPEEIRWHE+A+EGETGK+YRA+FHDR GRTVLILRPG QNTTS++NQLRHLVY++ENA+LNLP  QEQM WLIDFTGWS++ +VP+K AR+TIN+LQNHYPERLA+A LYNPPR+FEAFWKIVKYFLD KTFQKVKFVYP NK+SV++M+SYFDEENLP + GGK+I+ YNHEEFS+ MVQDD+K A  WG D KL +   N +   +
Sbjct:    1 MFHRWSNSHQQDQGSSELYAESKIKELKGVIGPLSGRSLTYCTDACFKRYLEARNWNVDKSKKMLEETLRWRSTYKPEEIRWHEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTTSMENQLRHLVYLLENAMLNLPPGQEQMSWLIDFTGWSITNNVPLKLARETINILQNHYPERLAIAFLYNPPRVFEAFWKIVKYFLDNKTFQKVKFVYPNNKDSVQVMKSYFDEENLPKELGGKSIMSYNHEEFSRLMVQDDLKCAAFWGSDGKLSNHIVNGNSASV 284          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: I1M8D3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 450.669 bits (1158), Expect = 3.387e-151
Identity = 206/284 (72.54%), Postives = 241/284 (84.86%), Query Frame = -2
Query:  357 MFSRWSHSHHNQQNDS-LQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEI 1205
            MF RWS+SH   Q  S L  ESK+KEL+  + PLS R L YCTDAC +RYLEARNWNVDKSKKMLEETL+WRSTYKPEEIRWHE+A+EGETGK+YRA+FHDR GRTVLILRPG QNTTS++NQLRHLVY++ENA+LNLP  QEQM WLIDFTGWS++ +VP+K AR+TIN+LQNHYPERLA+A LYNPPR+FEAFWKIVKYFLD KTFQKVKFVYP NK+SV++M+SYFDEENLP + GGK+I+ YNHEEFS+ MVQDD+K A  WG D KL +   N +   +
Sbjct:    1 MFHRWSNSHQQDQGSSELYAESKIKELKGVIGPLSGRSLTYCTDACFKRYLEARNWNVDKSKKMLEETLRWRSTYKPEEIRWHEVAMEGETGKLYRASFHDRQGRTVLILRPGMQNTTSMENQLRHLVYLLENAMLNLPPGQEQMSWLIDFTGWSITNNVPLKLARETINILQNHYPERLAIAFLYNPPRVFEAFWKIVKYFLDNKTFQKVKFVYPNNKDSVQVMKSYFDEENLPKELGGKSIMSYNHEEFSRLMVQDDLKCAAFWGSDGKLSNHIVNGNSASV 284          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: I3SNJ8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 449.129 bits (1154), Expect = 1.853e-150
Identity = 209/295 (70.85%), Postives = 242/295 (82.03%), Query Frame = -2
Query:  321 MFSRWSHSHHNQQNDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEITPEPICLAPAAS 1205
            MF+ W  S  +QQN     ESK+KEL+ A+ PLS   LKYCTDACL+RYLEARNWNVDKSKKML+ TLKWRS YKPEEIRW E+AVEGETGK+YRA FHDR GRTVLILRPG QNT+S+DNQ++HLVY++ENA+LNLP  QEQM WLIDFTGWS++ +VP KSAR+TI +LQNHYPERL +A LYNPPRIFEAFWKIVKYFLD KTF KVKFVYPKNK+SVELMRSYFD+ENLP++ GGK+IL YNHEEFSK M QDD+K A  WG D KL++        E+ PEP+C    A+
Sbjct:    1 MFNLWGGSQQDQQNKEAYAESKIKELKLAIGPLSGHDLKYCTDACLKRYLEARNWNVDKSKKMLKGTLKWRSVYKPEEIRWDEVAVEGETGKMYRAGFHDRQGRTVLILRPGMQNTSSIDNQIKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSITNNVPPKSARETIGILQNHYPERLGIAFLYNPPRIFEAFWKIVKYFLDNKTFHKVKFVYPKNKDSVELMRSYFDDENLPSELGGKSILNYNHEEFSKIMAQDDLKCADYWGTDEKLRN--HRHCAAEVAPEPVCSETPAT 293          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: D7SPE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01720 PE=4 SV=1)

HSP 1 Score: 447.588 bits (1150), Expect = 7.585e-150
Identity = 213/295 (72.20%), Postives = 247/295 (83.73%), Query Frame = -2
Query:  321 MFSRWSHSHHNQQNDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGFDNKLQSTGTNQSGPEITPEPICLAPAAS 1205
            MF R   SH++++NDSLQ  +KV ELRAAL PLS R L+YCTDACL RYLEARNWNVDK+KKMLEETLKWR+TYKPEEIRWHE+A EGETGKV RA+FHDR GRTVLI+RPG QNTTS +N +RHLVY+IEN+ILNL E QEQM WLIDFTGWSL+T+VPIK+ARD IN+LQNHYPERLA+ +LYNPPRIF AFWK+VKYFLD KTFQKVKFVYPKNKES+E+M+S FD ENLP +FGGKA L+Y+HEEFS+ M +DD+K+A+ WG D+K        SG E  P    LAP AS
Sbjct:    1 MFRR-RQSHNHEENDSLQRGAKVSELRAALGPLSGRSLQYCTDACLVRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWHEVAHEGETGKVSRADFHDRLGRTVLIMRPGMQNTTSAENNIRHLVYLIENSILNLREGQEQMSWLIDFTGWSLNTNVPIKTARDIINILQNHYPERLAICILYNPPRIFVAFWKVVKYFLDPKTFQKVKFVYPKNKESLEVMKSLFDVENLPGEFGGKATLKYDHEEFSRMMAEDDVKTASYWGLDSKPCHVTNGYSGAETMP----LAPPAS 290          
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Match: R0GE21_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021373mg PE=4 SV=1)

HSP 1 Score: 447.203 bits (1149), Expect = 1.326e-149
Identity = 216/298 (72.48%), Postives = 251/298 (84.23%), Query Frame = -2
Query:  330 MFSRWSHSHHNQQ--NDSLQHESKVKELRAALRPLSDRGLKYCTDACLRRYLEARNWNVDKSKKMLEETLKWRSTYKPEEIRWHEIAVEGETGKVYRANFHDRDGRTVLILRPGKQNTTSLDNQLRHLVYMIENAILNLPEDQEQMVWLIDFTGWSLSTSVPIKSARDTINVLQNHYPERLAMAVLYNPPRIFEAFWKIVKYFLDAKTFQKVKFVYPKNKESVELMRSYFDEENLPTDFGGKAILEYNHEEFSKQMVQDDIKSATLWGF----DNKLQSTGTNQSGPEITPEPICLAP 1205
            MF RW +S   +Q  N+S   E+K+KEL+A L  LS R   YC+DACL+RYLEARNWNV K+KKMLEETLKWRST+KPEEIRW E++ EGETGKVY+A FHDR GRTVLILRPG QNT SLD Q++HLVY+IENAILNLPEDQEQM WLIDFT WS+STSVPIKSAR+TIN+LQNHYPERLA+A LYNPPR+FEAFWKIVKYF+DAKTF KVKFVYPKN ESVELM S+FDEENLPT+FGGKA+L+YN+EEFSKQM Q+D+K+A  WG     +N+LQ++    SG EI+PEPI   P
Sbjct:    1 MF-RWKNSSQTEQEHNESALREAKIKELKALLGQLSGRSSLYCSDACLKRYLEARNWNVVKAKKMLEETLKWRSTFKPEEIRWDEVSGEGETGKVYKAGFHDRHGRTVLILRPGLQNTKSLDKQMKHLVYLIENAILNLPEDQEQMSWLIDFTNWSMSTSVPIKSARETINILQNHYPERLAVAFLYNPPRLFEAFWKIVKYFIDAKTFVKVKFVYPKNPESVELMSSFFDEENLPTEFGGKALLQYNYEEFSKQMNQEDVKTANFWGLIHRNNNQLQAS-NGFSGAEISPEPIQTNP 296          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
CSR1_YEAST2.571e-1226.89Phosphatidylinositol transfer protein CSR1 OS=Sacc... [more]
YN02_CAEEL3.358e-1224.60CRAL-TRIO domain-containing protein T23G5.2 OS=Cae... [more]
SEC14_CANAL4.176e-1228.44SEC14 cytosolic factor OS=Candida albicans (strain... [more]
SFH11_ARATH3.973e-1127.60Phosphatidylinositol/phosphatidylcholine transfer ... [more]
SFH6_ARATH6.227e-1128.90Phosphatidylinositol/phosphatidylcholine transfer ... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0092016 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2QLB5_GLYSO3.387e-15172.54Random slug protein 5 OS=Glycine soja GN=glysoja_0... [more]
I1M8D3_SOYBN3.387e-15172.54Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I3SNJ8_MEDTR1.853e-15070.85Uncharacterized protein OS=Medicago truncatula PE=... [more]
D7SPE3_VITVI7.585e-15072.20Putative uncharacterized protein OS=Vitis vinifera... [more]
R0GE21_9BRAS1.326e-14972.48Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001251CRAL-TRIO lipid binding domainSMARTSM00516sec14_4coord: 87..242
e-value: 1.2E-48
score: 177.6
IPR001251CRAL-TRIO lipid binding domainGENE3D3.40.525.10coord: 69..258
e-value: 6.5E-49
score: 165.7
IPR001251CRAL-TRIO lipid binding domainPFAMPF00650CRAL_TRIOcoord: 87..240
e-value: 1.4E-38
score: 131.9
IPR001251CRAL-TRIO lipid binding domainPROSITEPS50191CRAL_TRIOcoord: 81..245
score: 20.894
IPR001251CRAL-TRIO lipid binding domainSUPERFAMILY52087CRAL/TRIO domaincoord: 81..259
IPR011074CRAL/TRIO, N-terminal domainSMARTSM01100CRAL_TRIO_N_2coord: 42..67
e-value: 6.0E-8
score: 42.4
IPR011074CRAL/TRIO, N-terminal domainPFAMPF03765CRAL_TRIO_Ncoord: 41..66
e-value: 1.2E-6
score: 28.4
IPR011074CRAL/TRIO, N-terminal domainSUPERFAMILY46938CRAL/TRIO N-terminal domaincoord: 13..83
NoneNo IPR availableGENE3D1.10.8.20coord: 13..68
e-value: 9.1E-15
score: 54.0
NoneNo IPR availablePANTHERPTHR10174:SF151SUBFAMILY NOT NAMEDcoord: 9..269
NoneNo IPR availablePANTHERPTHR10174RETINALDEHYDE BINDING PROTEIN-RELATEDcoord: 9..269

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092016 ID=g.barbadense_cottongen_reftransV1_0092016; Name=g.barbadense_cottongen_reftransV1_0092016; organism=Gossypium barbadense; type=contig; length=1941bp
AAATAAAAAAAATACTCACCTTACGACAATGCAACTAAAAAAATGACATT
GTAATAAATCTGAATTTAACAAAATAATTTTAACAATGTTAACGATCGTA
CCTGAATTTTGAAATCTTAAAAATAAAGGACTAAATTTATAGAAATAAAA
GCACAAAAAAATTAAATTCTAAATTTACGAAAAGTACAAAATTTGTAACA
TATTTTAACCCACCAAATAATGATTTTTTGGAGTAAAAACCAAAGCTGAA
AATTTATACCTCATGTCCCTTAAAAGGCTATATATATTTGTTACATAATA
AGCCAAGGGCGGTTAGATCAACTAGCTGCCGGTGCGAGACAGATTGGCTC
GGGTGTTATCTCGGGTCCAGACTGATTCGTACCGGTAGATTGAAGTTTAT
TATCAAATCCCCACAATGTGGCGGATTTAATATCATCTTGGACCATTTGC
TTTGAGAATTCTTCATGGTTATATTCCAATATGGCTTTTCCTCCAAAATC
TGTTGGGAGATTTTCTTCATCAAAATAGGATCTCATTAGCTCCACACTTT
CTTTGTTTTTAGGGTACACAAATTTCACCTTTTGGAAGGTTTTGGCATCG
AGGAAATATTTAACAATCTTCCAAAATGCTTCGAAAATTCTTGGCGGATT
GTATAGAACCGCCATCGCCAACCTTTCGGGATAGTGGTTTTGTAACACGT
TAATGGTGTCGCGAGCGGACTTGATTGGAACACTCGTGCTCAAGCTCCAG
CCGGTGAAATCTATCAACCATACCATCTGTTCTTGATCCTCTGGAAGGTT
TAATATAGCATTCTCAATCATATACACCAAATGACGGAGCTGATTGTCTA
AGGATGTAGTGTTCTGTTTTCCCGGTCGCAATATAAGAACAGTCCTACCG
TCTCGGTCGTGAAAATTTGCTCGGTATACTTTTCCAGTCTCGCCTTCTAC
TGCAATTTCATGCCAACGTATTTCCTCAGGCTTATAGGTTGATCTCCATT
TGAGTGTCTCTTCCAGCATTTTCTTCGATTTGTCGACATTCCAGTTTCGT
GCCTCCAAGTATCTCCTCAAGCAAGCATCGGTGCAATATTTCAAACCGCG
GTCGGATAGTGGTCTGAGTGCGGCTCTAAGCTCCTTAACCTTAGATTCAT
GCTGCAATGAATCATTCTGTTGGTTATGATGAGAATGGCTCCATCTACTA
AACATTGTGACTGATGCTAGAAATCTAGCAAAAACCTAGTGCAACCTGCA
AAACATTGCATAACACTAAATTGGAACTAATTATTAAGAATTAAACAATC
TCAAAGAAAACCAGACAAGTTGAGAGGAGATGACTCTTTCCAGGGAAATT
TGTAAAGTGTTGTCTATCCAGAGTAACAGACCCCTCAAGGGATAGGTATA
GTACTCGAATCAAGCCGAGGTTCACAGAATGAGTGCTTTAGGCAGACCAC
ACTTTTGGAGACTTCTTCATATGGAGTTAACCTATGGAACACAGACGAAA
TCTTAGGACATTAAACTTTGTATAAACGACCAGAAAAAGAGCCAACCTTC
CTTGAGTCTTGCCTGAGAAAAGAAACAGAGCAAAGACACTACTAAGCTTA
AAAGACAAGAAAAAGGGTTTGATCACTTGATGTTGATTTTTTTTTATCAC
TAAAGTAGCATGGAATTCTTCAACATGCCAAAACCAGTAAGTGAGTAGGT
ATGGCTTTTTATGGTTTTTTGGTCCAGAGATATTTCTTAAAAAAGAGTAG
CAAAAGGTGCACGGTATTCGTGGTAAAGGAGACTTGGTTGATGTTTTATG
GGTTTAGATTTTTCGGACAGGTGTTAAGGCCAAATGTTATTGCTGTCAAT
TTTATGACAGATTTGCAGGAAGCAGAACCTATAATTTTATGGTGAAGAAA
AACTCTTCATTTTCAGATTTCAGACAGAGAGTAGACAACAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
IPR011074CRAL/TRIO_N_dom