g.arboreum_cottongen_reftransV1_0003490, g.arboreum_cottongen_reftransV1_0003490 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2N4W8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G028200 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.184e-51 Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXX-XXXXXSYLLKGC 307 YDAIGLMKQLSEHTA TYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVS S SSYLLKGC Sbjct: 693 YDAIGLMKQLSEHTAATYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVSFSSPTSSYLLKGC 795
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2LU27_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G028200 PE=4 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 2.663e-50 Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXX-XXXXXSYLLKGC 307 YDAIGLMKQLSEHTA TYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVS S SSYLLKGC Sbjct: 908 YDAIGLMKQLSEHTAATYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKSSTAVSFSSPTSSYLLKGC 1010
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A061GRG0_THECC (Myb domain protein 3r-4, putative OS=Theobroma cacao GN=TCM_047091 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.224e-42 Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKM--DKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDAIGLMKQLSEHTA YADALEVLGNETPESIVKGRRSNN + DKENNQ+E++SHLAS+IL ERR LDFSECGTPGKGTEN KSST++S S SYLLKGC Sbjct: 939 YDAIGLMKQLSEHTAAAYADALEVLGNETPESIVKGRRSNNPNVNEDKENNQLESRSHLASNILAERRTLDFSECGTPGKGTENGKSSTSMSSFSSPSYLLKGC 1042
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0B0NXX8_GOSAR (Myb-related 3R-1-like protein OS=Gossypium arboreum GN=F383_21854 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.243e-37 Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = -2 Query: 56 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSK-MDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRK 307 YDAIGLMKQLSEH A YADALEVLGNETP+SI+KGR SNNS +DKENNQ+E SHLAS+I+VERRILDFSECGTPGKGTEN K Sbjct: 960 YDAIGLMKQLSEHGAAAYADALEVLGNETPQSIIKGRGSNNSNNIDKENNQLENHSHLASNIMVERRILDFSECGTPGKGTENGK 1044
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2RUD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G051000 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.552e-37 Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = -2 Query: 56 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNN-SKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRK 307 YDAIGLMKQLSEH+A YADALEVLGNETP+SI+KGR SNN + +DKENNQ+E SHLAS+I+VERR+LDFSECGTPGKGTEN K Sbjct: 923 YDAIGLMKQLSEHSAAAYADALEVLGNETPQSIIKGRGSNNPNNIDKENNQLENHSHLASNIMVERRVLDFSECGTPGKGTENGK 1007
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2SQU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G110000 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 7.353e-36 Identity = 79/105 (75.24%), Postives = 84/105 (80.00%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXX---XXSYLLKGC 307 YDAIGL+KQLSEHTA YADALEVLGNETP+SIVKGR SNN MDKENN +E SHL S+IL ERRILDFSEC TP K TEN KSST + S PSSYLLKGC Sbjct: 874 YDAIGLIKQLSEHTAAAYADALEVLGNETPKSIVKGRLSNNRNMDKENNGVENSSHLTSNILAERRILDFSECETPRKETENGKSSTTAATVSFSGPSSYLLKGC 978
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0D2UA19_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G110000 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 7.439e-36 Identity = 79/105 (75.24%), Postives = 84/105 (80.00%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXX---XXSYLLKGC 307 YDAIGL+KQLSEHTA YADALEVLGNETP+SIVKGR SNN MDKENN +E SHL S+IL ERRILDFSEC TP K TEN KSST + S PSSYLLKGC Sbjct: 875 YDAIGLIKQLSEHTAAAYADALEVLGNETPKSIVKGRLSNNRNMDKENNGVENSSHLTSNILAERRILDFSECETPRKETENGKSSTTAATVSFSGPSSYLLKGC 979
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: B9RS48_RICCO (Myb, putative OS=Ricinus communis GN=RCOM_0802980 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.432e-31 Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENN-----QMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDAI LMKQLSEHTA+ +ADALEVLGNETPE+I++ RRS+ M++ENN + E SHLAS+I E R LDFSECGTPGKGTE KSSTA+ FSSPSSYLLKGC Sbjct: 939 YDAIALMKQLSEHTASAFADALEVLGNETPETILEKRRSSIQNMNQENNGATNSEPENHSHLASNISTECRTLDFSECGTPGKGTERGKSSTAIIFSSPSSYLLKGC 1045
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: M5XM69_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000676mg PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 4.080e-30 Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKEN-----NQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDAIGLMKQ+SE TA YA+A EVLGNETPE++ + RR N + +D EN NQ + S A+++LVERR LDFSECGTPGKGTEN KSS A +FSSPSSYLLKGC Sbjct: 931 YDAIGLMKQISEQTAAAYANAQEVLGNETPETLFRERRKNQALVDPENNHGPPNQPGSSSLSAANVLVERRTLDFSECGTPGKGTENAKSSNAKTFSSPSSYLLKGC 1037
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: B9IKM4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00710g PE=4 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 3.373e-29 Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDAI LMKQLSEHTA+ YADALEVLG +TPES++K RR +N +N E +SHLAS++L E R LDFSECGTPGK TEN KSS+A+SFSSPS+YLLKGC Sbjct: 929 YDAIALMKQLSEHTASAYADALEVLGKDTPESMLKERRHSN----DQNGDQENRSHLASNVLTECRTLDFSECGTPGKLTENGKSSSAISFSSPSAYLLKGC 1026 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003490 ID=g.arboreum_cottongen_reftransV1_0003490; Name=g.arboreum_cottongen_reftransV1_0003490; organism=Gossypium arboreum; type=contig; length=308bpback to top |