g.arboreum_cottongen_reftransV1_0003490, g.arboreum_cottongen_reftransV1_0003490 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: Q7XJ57_ARATH (At4g32740 OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.183e-23 Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = -2 Query: 71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307 YDAIGLMK LSEH+AT YADALEVLGN+TPESI+K R+ N S KE NQ + L + VE R LDFS+CGTPGK Sbjct: 117 YDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKE-NQHQPHDQLGNRSQVECRALDFSDCGTPGKA 194
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A078FKL8_BRANA (BnaA03g52170D protein OS=Brassica napus GN=BnaA03g52170D PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.016e-23 Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = -2 Query: 71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307 YDAIGLMK LSEHTAT YADALEVLGN+TPE+I+K R+ N S KE NQ+ L + VERR LDFS+CGTPGK Sbjct: 812 YDAIGLMKHLSEHTATAYADALEVLGNDTPETILKKRQMNKSIQGKE-NQLWPHDQLENRSQVERRALDFSDCGTPGKA 889
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: O65527_ARATH (Putative uncharacterized protein AT4g32740 OS=Arabidopsis thaliana GN=F4D11.60 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.233e-23 Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = -2 Query: 71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307 YDAIGLMK LSEH+AT YADALEVLGN+TPESI+K R+ N S KE NQ + L + VE R LDFS+CGTPGK Sbjct: 136 YDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKE-NQHQPHDQLGNRSQVECRALDFSDCGTPGKA 213
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: M4F7I4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037045 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.265e-23 Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = -2 Query: 71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307 YDAIGLMK LSEHTAT YADALEVLGN+TPE+I+K R+ N S KE NQ+ L + VERR LDFS+CGTPGK Sbjct: 797 YDAIGLMKHLSEHTATAYADALEVLGNDTPETILKKRQMNKSIQGKE-NQLWPHDQLENRSQVERRALDFSDCGTPGKA 874
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A068V5X2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_118 OS=Coffea canephora GN=GSCOC_T00017242001 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.461e-23 Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENN-----QMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDA+GLMKQLSEHTA+ +A+A EVLG+ETPE+I+K + S DK+ N Q E S + S+++ E R LDFSECGTP KG E K ST VSFSSPSSYLLKGC Sbjct: 881 YDALGLMKQLSEHTASAFANAQEVLGDETPETILK-KSSKILNSDKQQNDLLICQQEHHSTVGSNVMTECRTLDFSECGTPAKGAETGKLSTGVSFSSPSSYLLKGC 986 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003490 ID=g.arboreum_cottongen_reftransV1_0003490; Name=g.arboreum_cottongen_reftransV1_0003490; organism=Gossypium arboreum; type=contig; length=308bpback to top |