g.arboreum_cottongen_reftransV1_0003490, g.arboreum_cottongen_reftransV1_0003490 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003490
Unique Nameg.arboreum_cottongen_reftransV1_0003490
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0003490:1..308 .
Chr1:48783946..48784337 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: Q7XJ57_ARATH (At4g32740 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.183e-23
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = -2
Query:   71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307
            YDAIGLMK LSEH+AT YADALEVLGN+TPESI+K R+ N S   KE NQ +    L +   VE R LDFS+CGTPGK 
Sbjct:  117 YDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKE-NQHQPHDQLGNRSQVECRALDFSDCGTPGKA 194          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A078FKL8_BRANA (BnaA03g52170D protein OS=Brassica napus GN=BnaA03g52170D PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.016e-23
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = -2
Query:   71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307
            YDAIGLMK LSEHTAT YADALEVLGN+TPE+I+K R+ N S   KE NQ+     L +   VERR LDFS+CGTPGK 
Sbjct:  812 YDAIGLMKHLSEHTATAYADALEVLGNDTPETILKKRQMNKSIQGKE-NQLWPHDQLENRSQVERRALDFSDCGTPGKA 889          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: O65527_ARATH (Putative uncharacterized protein AT4g32740 OS=Arabidopsis thaliana GN=F4D11.60 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.233e-23
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = -2
Query:   71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307
            YDAIGLMK LSEH+AT YADALEVLGN+TPESI+K R+ N S   KE NQ +    L +   VE R LDFS+CGTPGK 
Sbjct:  136 YDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKE-NQHQPHDQLGNRSQVECRALDFSDCGTPGKA 213          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: M4F7I4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037045 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.265e-23
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = -2
Query:   71 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKG 307
            YDAIGLMK LSEHTAT YADALEVLGN+TPE+I+K R+ N S   KE NQ+     L +   VERR LDFS+CGTPGK 
Sbjct:  797 YDAIGLMKHLSEHTATAYADALEVLGNDTPETILKKRQMNKSIQGKE-NQLWPHDQLENRSQVERRALDFSDCGTPGKA 874          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A068V5X2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_118 OS=Coffea canephora GN=GSCOC_T00017242001 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.461e-23
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENN-----QMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDA+GLMKQLSEHTA+ +A+A EVLG+ETPE+I+K + S     DK+ N     Q E  S + S+++ E R LDFSECGTP KG E  K ST VSFSSPSSYLLKGC
Sbjct:  881 YDALGLMKQLSEHTASAFANAQEVLGDETPETILK-KSSKILNSDKQQNDLLICQQEHHSTVGSNVMTECRTLDFSECGTPAKGAETGKLSTGVSFSSPSSYLLKGC 986          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XJ57_ARATH3.183e-2364.56At4g32740 OS=Arabidopsis thaliana PE=2 SV=1[more]
A0A078FKL8_BRANA4.016e-2365.82BnaA03g52170D protein OS=Brassica napus GN=BnaA03g... [more]
O65527_ARATH4.233e-2364.56Putative uncharacterized protein AT4g32740 OS=Arab... [more]
M4F7I4_BRARP4.265e-2365.82Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A068V5X2_COFCA4.461e-2360.75Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003490 ID=g.arboreum_cottongen_reftransV1_0003490; Name=g.arboreum_cottongen_reftransV1_0003490; organism=Gossypium arboreum; type=contig; length=308bp
TGCAACCTTTCAAGAGATATGAAGAGGGGCTTGAGAAACTCACGGCAGTT
GAGGACTTTCTATTTTCGGTACCCTTTCCAGGCGTTCCACATTCACTAAA
GTCAAGGATGCGACGCTCCACCAAGATATCTGAAGCCAAATGTGATTGAG
TCTCCATTTGATTATTCTCTTTGTCCATTTTGGAATTGTTGGAGCGTCTT
CCCTTCACAATTGATTCTGGAGTTTCATTTCCCAAAACTTCCAAAGCATC
AGCATAAGTAGTTGCAGTATGCTCACTTAATTGTTTCATCAACCCGATGG
CATCGTAG
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