g.arboreum_cottongen_reftransV1_0003490, g.arboreum_cottongen_reftransV1_0003490 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A067GWE3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0473531mg PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.786e-28 Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDK-----ENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDA+GLMKQLSEHTA YADALEVLG E+ E++V R S + MD+ N+ E+ SHL S++++ERR LDFSECGTP KGTE RKS T V+FSSPSSYLLKGC Sbjct: 767 YDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENES-SHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGC 872
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: V4WBV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007316mg PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.218e-27 Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDK-----ENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDA+GLMKQLSEHTA YADALEVLG E+ E++V R S + MD+ N+ E+ SHL S++++ERR LDFSECGTP KGTE RKS T V+FSSPSSYLLKGC Sbjct: 940 YDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENES-SHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGC 1045
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0A0LLZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375240 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.829e-27 Identity = 71/106 (66.98%), Postives = 81/106 (76.42%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSN--NSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXX--XXXXSYLLKGC 307 YDAIGLMK++SE TA A+A EVLGNETP+S++KGRR N DK N+ ++S LA DIL ERR LDFSECGTPGKGTEN KSSTA + SSPSSYLLKGC Sbjct: 893 YDAIGLMKEVSEQTAAACANAQEVLGNETPQSLLKGRRGKYENHNNDKNNHFTNSRSTLAPDILTERRTLDFSECGTPGKGTENGKSSTATTRSFSSPSSYLLKGC 998
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: B9H921_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0006s25840g PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.526e-26 Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDAI LMKQLSEHTA YADALEV+G +TPESI+K RR +N + +E SHL S++ E R LDFSECGTPGK TEN KSSTA+SFSSPSSYLLK C Sbjct: 929 YDAIALMKQLSEHTAPAYADALEVMGKDTPESILKERRRSNDP----DGDIENCSHLVSNVSTECRTLDFSECGTPGKKTENGKSSTAISFSSPSSYLLKSC 1026
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A067GMH5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038794mg PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.845e-26 Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDK-----ENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDA+GLMKQLS+HTA YADALEVLG E+ E++V R S + M + N+ E+ SHL S++++E R LDFSECGTP +GTE RKS T V+FSSPSSYLLKGC Sbjct: 138 YDALGLMKQLSKHTAAAYADALEVLGGESSETLVNERNSKSPSMGQGIEHLPENENES-SHLDSNVMMECRTLDFSECGTPARGTETRKSLTGVNFSSPSSYLLKGC 243
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A067KR01_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_07780 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.118e-25 Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKEN-----NQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDA+GLM+QLSE TA YADALEVLGNETPE+I++ RRS D+EN NQ E SHLA L E R LDFSEC TPGKGTE KSS+A+SFSSPSSYLLKGC Sbjct: 914 YDALGLMRQLSEQTAPAYADALEVLGNETPETILEKRRSYK---DQENNGAQKNQPENHSHLA---LTECRTLDFSECETPGKGTERGKSSSAMSFSSPSSYLLKGC 1014
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A059CTK7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02893 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 4.621e-25 Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKEN----NQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDA+GLMK LSE +A T+A A EVLGN+TPE++ K + N+ D+EN QME S + S + VERR LDFSECGTPGK EN KSS A+SFSSPSSYLLKGC Sbjct: 938 YDALGLMKHLSEQSAATFATAQEVLGNDTPETVSKKKNLNHQNPDQENCKSKQQMENCSSMGSALPVERRTLDFSECGTPGKPKENGKSSIAMSFSSPSSYLLKGC 1043
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: Q948S5_TOBAC (Myb OS=Nicotiana tabacum GN=NtmybA2 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.574e-24 Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKX-XXXXXXXXXXSYLLKGC 307 YDAIGLMKQLSE TA +ADA EVLG ETPESI++GR S N K D E S L+++++ ERR LDFSECG+PGKG E ++ SFSSPSSYLLKGC Sbjct: 945 YDAIGLMKQLSEQTAGAFADAQEVLGGETPESILRGRNSKNQKAD------ENHSLLSANVMSERRTLDFSECGSPGKGKETENFCTSNNSFSSPSSYLLKGC 1041
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: K4CM56_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g068320.2 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.366e-23 Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRK-XXXXXXXXXXXSYLLKGC 307 YDAIGLMKQLSE TA +ADA EVLG +TPE+I++GR S N K D E S L+++ + ERR LDFSECG+PGKG E K S+ SFSSPSSYLLKGC Sbjct: 941 YDAIGLMKQLSEQTAGAFADAQEVLGGDTPETILRGRNSKNQKAD------ENHSLLSANAMSERRTLDFSECGSPGKGKETEKCCSSNNSFSSPSSYLLKGC 1037
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: R0GUI6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004063mg PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.893e-23 Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = -2 Query: 2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307 YDAIGLMK LSEH+AT YADALEVLGN+TPE+I+K R+ N S KE NQ L + VERR LDFS+CGTPGK T + S+ +SSPSSYLLK C Sbjct: 891 YDAIGLMKHLSEHSATAYADALEVLGNDTPETILKKRQLNKSIQGKE-NQHHPHDQLGNRSQVERRTLDFSDCGTPGKSTVS--SAPPGGYSSPSSYLLKSC 989 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003490 ID=g.arboreum_cottongen_reftransV1_0003490; Name=g.arboreum_cottongen_reftransV1_0003490; organism=Gossypium arboreum; type=contig; length=308bpback to top |