g.arboreum_cottongen_reftransV1_0003490, g.arboreum_cottongen_reftransV1_0003490 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003490
Unique Nameg.arboreum_cottongen_reftransV1_0003490
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0003490:1..308 .
Chr1:48783946..48784337 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A067GWE3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0473531mg PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.786e-28
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDK-----ENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDA+GLMKQLSEHTA  YADALEVLG E+ E++V  R S +  MD+       N+ E+ SHL S++++ERR LDFSECGTP KGTE RKS T V+FSSPSSYLLKGC
Sbjct:  767 YDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENES-SHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGC 872          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: V4WBV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007316mg PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.218e-27
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDK-----ENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDA+GLMKQLSEHTA  YADALEVLG E+ E++V  R S +  MD+       N+ E+ SHL S++++ERR LDFSECGTP KGTE RKS T V+FSSPSSYLLKGC
Sbjct:  940 YDALGLMKQLSEHTAAAYADALEVLGGESSETLVNERNSKSPSMDQGIEHLPENENES-SHLDSNVMMERRTLDFSECGTPAKGTETRKSLTGVNFSSPSSYLLKGC 1045          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A0A0LLZ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375240 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.829e-27
Identity = 71/106 (66.98%), Postives = 81/106 (76.42%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSN--NSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXX--XXXXSYLLKGC 307
            YDAIGLMK++SE TA   A+A EVLGNETP+S++KGRR    N   DK N+   ++S LA DIL ERR LDFSECGTPGKGTEN KSSTA +   SSPSSYLLKGC
Sbjct:  893 YDAIGLMKEVSEQTAAACANAQEVLGNETPQSLLKGRRGKYENHNNDKNNHFTNSRSTLAPDILTERRTLDFSECGTPGKGTENGKSSTATTRSFSSPSSYLLKGC 998          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: B9H921_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0006s25840g PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.526e-26
Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDAI LMKQLSEHTA  YADALEV+G +TPESI+K RR +N      +  +E  SHL S++  E R LDFSECGTPGK TEN KSSTA+SFSSPSSYLLK C
Sbjct:  929 YDAIALMKQLSEHTAPAYADALEVMGKDTPESILKERRRSNDP----DGDIENCSHLVSNVSTECRTLDFSECGTPGKKTENGKSSTAISFSSPSSYLLKSC 1026          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A067GMH5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038794mg PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.845e-26
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDK-----ENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDA+GLMKQLS+HTA  YADALEVLG E+ E++V  R S +  M +       N+ E+ SHL S++++E R LDFSECGTP +GTE RKS T V+FSSPSSYLLKGC
Sbjct:  138 YDALGLMKQLSKHTAAAYADALEVLGGESSETLVNERNSKSPSMGQGIEHLPENENES-SHLDSNVMMECRTLDFSECGTPARGTETRKSLTGVNFSSPSSYLLKGC 243          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A067KR01_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_07780 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.118e-25
Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKEN-----NQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDA+GLM+QLSE TA  YADALEVLGNETPE+I++ RRS     D+EN     NQ E  SHLA   L E R LDFSEC TPGKGTE  KSS+A+SFSSPSSYLLKGC
Sbjct:  914 YDALGLMRQLSEQTAPAYADALEVLGNETPETILEKRRSYK---DQENNGAQKNQPENHSHLA---LTECRTLDFSECETPGKGTERGKSSSAMSFSSPSSYLLKGC 1014          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: A0A059CTK7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02893 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.621e-25
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKEN----NQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDA+GLMK LSE +A T+A A EVLGN+TPE++ K +  N+   D+EN     QME  S + S + VERR LDFSECGTPGK  EN KSS A+SFSSPSSYLLKGC
Sbjct:  938 YDALGLMKHLSEQSAATFATAQEVLGNDTPETVSKKKNLNHQNPDQENCKSKQQMENCSSMGSALPVERRTLDFSECGTPGKPKENGKSSIAMSFSSPSSYLLKGC 1043          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: Q948S5_TOBAC (Myb OS=Nicotiana tabacum GN=NtmybA2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.574e-24
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKX-XXXXXXXXXXSYLLKGC 307
            YDAIGLMKQLSE TA  +ADA EVLG ETPESI++GR S N K D      E  S L+++++ ERR LDFSECG+PGKG E     ++  SFSSPSSYLLKGC
Sbjct:  945 YDAIGLMKQLSEQTAGAFADAQEVLGGETPESILRGRNSKNQKAD------ENHSLLSANVMSERRTLDFSECGSPGKGKETENFCTSNNSFSSPSSYLLKGC 1041          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: K4CM56_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g068320.2 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.366e-23
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRK-XXXXXXXXXXXSYLLKGC 307
            YDAIGLMKQLSE TA  +ADA EVLG +TPE+I++GR S N K D      E  S L+++ + ERR LDFSECG+PGKG E  K  S+  SFSSPSSYLLKGC
Sbjct:  941 YDAIGLMKQLSEQTAGAFADAQEVLGGDTPETILRGRNSKNQKAD------ENHSLLSANAMSERRTLDFSECGSPGKGKETEKCCSSNNSFSSPSSYLLKGC 1037          
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Match: R0GUI6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004063mg PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.893e-23
Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = -2
Query:    2 YDAIGLMKQLSEHTATTYADALEVLGNETPESIVKGRRSNNSKMDKENNQMETQSHLASDILVERRILDFSECGTPGKGTENRKXXXXXXXXXXXSYLLKGC 307
            YDAIGLMK LSEH+AT YADALEVLGN+TPE+I+K R+ N S   KE NQ      L +   VERR LDFS+CGTPGK T +  S+    +SSPSSYLLK C
Sbjct:  891 YDAIGLMKHLSEHSATAYADALEVLGNDTPETILKKRQLNKSIQGKE-NQHHPHDQLGNRSQVERRTLDFSDCGTPGKSTVS--SAPPGGYSSPSSYLLKSC 989          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067GWE3_CITSI7.786e-2864.49Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
V4WBV5_9ROSI1.218e-2764.49Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0A0LLZ9_CUCSA1.829e-2766.98Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
B9H921_POPTR1.526e-2667.65Myb family transcription factor family protein OS=... [more]
A0A067GMH5_CITSI2.845e-2660.75Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
A0A067KR01_JATCU1.118e-2568.22MYB family protein OS=Jatropha curcas GN=JCGZ_0778... [more]
A0A059CTK7_EUCGR4.621e-2562.26Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
Q948S5_TOBAC1.574e-2462.14Myb OS=Nicotiana tabacum GN=NtmybA2 PE=2 SV=1[more]
K4CM56_SOLLC1.366e-2362.14Uncharacterized protein OS=Solanum lycopersicum GN... [more]
R0GUI6_9BRAS1.893e-2361.76Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003490 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003490 ID=g.arboreum_cottongen_reftransV1_0003490; Name=g.arboreum_cottongen_reftransV1_0003490; organism=Gossypium arboreum; type=contig; length=308bp
TGCAACCTTTCAAGAGATATGAAGAGGGGCTTGAGAAACTCACGGCAGTT
GAGGACTTTCTATTTTCGGTACCCTTTCCAGGCGTTCCACATTCACTAAA
GTCAAGGATGCGACGCTCCACCAAGATATCTGAAGCCAAATGTGATTGAG
TCTCCATTTGATTATTCTCTTTGTCCATTTTGGAATTGTTGGAGCGTCTT
CCCTTCACAATTGATTCTGGAGTTTCATTTCCCAAAACTTCCAAAGCATC
AGCATAAGTAGTTGCAGTATGCTCACTTAATTGTTTCATCAACCCGATGG
CATCGTAG
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