g.arboreum_cottongen_reftransV1_0001582, g.arboreum_cottongen_reftransV1_0001582 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001582
Unique Nameg.arboreum_cottongen_reftransV1_0001582
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length786
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0001582:1..786 .
Chr4:27184837..27186631 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A068V8L3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_144 OS=Coffea canephora GN=GSCOC_T00005043001 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.182e-104
Identity = 147/196 (75.00%), Postives = 175/196 (89.29%), Query Frame = 2
Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y++NTHA+THS+Y+VD+VQIF+ +R+GESERFKKFS T NR+LLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY++S    GVLLLCEVALGDMAELL A  +ADKLP GKLSTKG+GATAPD SE+++L+DGV+VP G+PK+   + +LLYNEYIVYNV+QI+MRY++QV F Y +
Sbjct:  435 YMKNTHAKTHSSYSVDIVQIFRASREGESERFKKFSRTHNRLLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYSSSNAHAGVLLLCEVALGDMAELLHADYNADKLPQGKLSTKGIGATAPDSSESRTLEDGVIVPSGRPKQLGTKASLLYNEYIVYNVEQIKMRYVLQVKFNYRR 630          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: K7LGW7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.195e-104
Identity = 149/195 (76.41%), Postives = 176/195 (90.26%), Query Frame = 2
Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THSNYTVD+VQIF+ +R+GE+ERF+KF+ TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY       GVLLLCEVALG+MAELL AK DAD+LP+GKLSTKG+G TAPDPS+A+ L+DG+VVPLGKPK ++ ++G LLYNEYIVYNV+QIRMRY++ V+F +
Sbjct:  472 YMKNTHAETHSNYTVDIVQIFRTSREGEAERFRKFASTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYATRTAKDGVLLLCEVALGEMAELLTAKYDADQLPNGKLSTKGLGGTAPDPSKARELEDGLVVPLGKPKTKSGKKGHLLYNEYIVYNVEQIRMRYIVHVNFNF 666          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: K7VS39_MAIZE (Uncharacterized protein OS=Zea mays GN=ZEAMMB73_284458 PE=4 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 8.873e-104
Identity = 145/197 (73.60%), Postives = 169/197 (85.79%), Query Frame = 2
Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPK-EQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y++NTH +THS YTVD+VQIFKV+R GE+ERF+KF+ T+NRMLLWHGSRL+NW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY + A  +GVLLLCEVALGDM ELL A  DA+ LP GKLSTKGVG TAP+  E++  DDGVVVPLG+PK E ++ G LLYNEYIVYNVDQIRMRY++ V+F + +
Sbjct:   70 YLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFASTRNRMLLWHGSRLSNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLSTKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFKR 266          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: B4FCJ3_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 2.673e-103
Identity = 144/197 (73.10%), Postives = 170/197 (86.29%), Query Frame = 2
Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y++NTH +THS YTVD+VQIFKV+R GE+ERF+KF+ T+NRMLLWHGSRL+NW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY + A  +GVLLLCEVALGDM ELL A  DA+ LP GKLSTKGVG TAP+  E++  DDGVVVPLG+PK++ ++ G LLYNEYIVYNVDQIRMRY++ V+F + +
Sbjct:  137 YLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFASTRNRMLLWHGSRLSNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLSTKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFKR 333          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: M1CY69_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402030070 PE=4 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 2.465e-102
Identity = 149/195 (76.41%), Postives = 170/195 (87.18%), Query Frame = 2
Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNR-EGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THS+Y VD+VQ+F+ +R+GE+ERF+KFS   NRMLLWHGSRLTNW GILSQGLRIAPPEAP+TGYMFGKGVYFADMFS+SA YCY +SA   GVLLLCEVALGDM ELL A SDADKLP GKLSTK VGATAPD  EAQ L+DGV+VPLG PKE+ + EG LL+NEYIVYNV+QIRMRY+IQV F Y
Sbjct:  387 YMKNTHAKTHSSYAVDIVQVFRASRNGETERFQKFSDMSNRMLLWHGSRLTNWAGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSESAIYCYASSAAKNGVLLLCEVALGDMNELLSANSDADKLPSGKLSTKAVGATAPDFKEAQILEDGVIVPLGNPKERPKHEGILLHNEYIVYNVEQIRMRYVIQVEFNY 581          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_HUMAN (Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=PARP3 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 7.740e-26
Identity = 75/199 (37.69%), Postives = 100/199 (50.25%), Query Frame = 2
Query:    5 IQNTHAQTHSNYTVDVVQ-IFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYC--YTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLD-DG--VVVPLGKPK--EQNREGALLYNEYIVYNVDQIRMRYLIQVSF 577
            IQ    QT SN+    +Q I+KV ++GE +RF+  S   NR LLWHG+ +     IL+ GLRI     P +G   GKG+YFA   SKSA Y       A   G + L EVALG    +          P G  S    G T PDP++   L+ DG  VVVP G+P    +        +EY++Y   Q R+RYL++V  
Sbjct:  339 IQTYLEQTGSNHRCPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRI----MPHSGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVHL 533          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.286e-20
Identity = 62/188 (32.98%), Postives = 94/188 (50.00%), Query Frame = 2
Query:   38 YTVDVVQIFKVTRDGESERFKKFSGTK---NRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQ---AKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK-PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580
            Y+  V +I+ V    ES     +   K   N++LLW G+R +N    L  G   A    P  GYMFGK +  +D  +++A Y +T      G L+L   +LG   + +       D  ++ + K+  KGVG    DPSE  +  DGV VP GK     N++G L YNEY VY+  Q+ + +L+ V ++
Sbjct:  638 YSATVERIYAV----ESSALPSYDEIKKLPNKVLLWCGTRSSNLLRHLRDGFVPAVCHIPVPGYMFGKAIVCSDAAAEAALYGFTAVDRPEGYLVLAVASLGKEIQEITGTPGSEDVKRMEEKKMGVKGVGRKTTDPSEHFTWRDGVTVPCGKLVPSTNKDGPLEYNEYAVYDPKQVSIAFLVGVKYE 821          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_SOYBN (Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.167e-19
Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 2
Query:   35 NYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALG-DMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK-PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580
             Y V V  IF V + G    ++      N++LLW GSR +N    L +G   A    P  GYMFGK +  +D  +++A Y +T      G L+L   +LG ++ EL     DA  L + K+  KG G    D SE     D + VP GK     +++  L YNEY VY+  + R+ YL+ V ++
Sbjct:  620 EYGVSVENIFAV-QTGGCPSYEDIIKLPNKVLLWCGSRSSNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDKKRARISYLVGVKYE 802          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.546e-19
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   35 NYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALG-DMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK-PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580
             Y V V  IF V        +       N++LLW GSR +N    L +G   A    P  GYMFGK +  +D  +++A Y +T      G L+L   +LG ++ EL     D   L + K+  KG+G    D SE     D + VP G     ++ +  L YNEY VY+  Q+R+ YL+ V ++
Sbjct:  607 EYGVSVENIFTVESSA-CPSYADIVKMPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTSLEEKKVGVKGLGKKKTDESEHFVWKDDIKVPCGSIIASEHEDSPLEYNEYAVYDPKQVRISYLVGVKYE 789          
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.192e-19
Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = 2
Query:   35 NYTVDVVQIFKVTRDG--ESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALG-DMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK--PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580
             Y V V  +F V  D     +  KK     N++LLW GSR +N    + +G   A    P  GYMFG+ +  +D  +++A Y +T      G L+L   +LG ++ E      D   L D K+  KG+G    + SE     D + VP G+  P E +++  L YNEY VY+  Q  +R+L++V ++
Sbjct:  620 EYGVSVQNVFAVESDAIPSLDDIKKLP---NKVLLWCGSRSSNLLRHIYKGFLPAVCSLPVPGYMFGRAIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGEEVTEFTSPPEDTKTLEDKKIGVKGLGRKKTEESEHFMWRDDIKVPCGRLVPSE-HKDSPLEYNEYAVYDPKQTSIRFLVEVKYE 802          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068V8L3_COFCA1.182e-10475.00Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
K7LGW7_SOYBN1.195e-10476.41Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7VS39_MAIZE8.873e-10473.60Uncharacterized protein OS=Zea mays GN=ZEAMMB73_28... [more]
B4FCJ3_MAIZE2.673e-10373.10Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
M1CY69_SOLTU2.465e-10276.41Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PARP3_HUMAN7.740e-2637.69Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=... [more]
PARP3_ORYSJ1.286e-2032.98Poly [ADP-ribose] polymerase 3 OS=Oryza sativa sub... [more]
PARP3_SOYBN1.167e-1933.70Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=P... [more]
PARP3_MEDTR1.546e-1932.61Putative poly [ADP-ribose] polymerase 3 OS=Medicag... [more]
PARP3_ARATH4.192e-1932.09Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thal... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012317Poly(ADP-ribose) polymerase, catalytic domainPFAMPF00644PARPcoord: 1..151
e-value: 9.5E-58
score: 195.1
IPR012317Poly(ADP-ribose) polymerase, catalytic domainGENE3D3.90.228.10coord: 1..152
e-value: 3.8E-65
score: 219.0
IPR012317Poly(ADP-ribose) polymerase, catalytic domainPROSITEPS51059PARP_CATALYTICcoord: 1..155
score: 77.553
NoneNo IPR availablePANTHERPTHR10459DNA LIGASEcoord: 6..152
NoneNo IPR availablePANTHERPTHR10459:SF59SUBFAMILY NOT NAMEDcoord: 6..152
NoneNo IPR availableSUPERFAMILY56399ADP-ribosylationcoord: 1..153

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001582 ID=g.arboreum_cottongen_reftransV1_0001582; Name=g.arboreum_cottongen_reftransV1_0001582; organism=Gossypium arboreum; type=contig; length=786bp
GTATATTCAGAATACTCATGCTCAGACACATTCAAATTATACAGTTGATG
TTGTTCAAATATTCAAGGTGACAAGAGACGGTGAAAGTGAACGCTTTAAA
AAGTTTTCTGGAACAAAAAATAGAATGCTGTTGTGGCATGGTTCTCGGCT
TACTAACTGGACTGGCATTCTGTCCCAAGGTTTGCGCATTGCTCCACCTG
AAGCGCCTGCCACGGGTTATATGTTTGGGAAGGGGGTTTACTTTGCTGAT
ATGTTCTCCAAAAGTGCAAATTATTGCTATACTAATTCTGCCTTCACAAC
TGGGGTGTTGCTTCTATGTGAGGTTGCCCTGGGTGACATGGCTGAGCTTC
TACAAGCTAAAAGCGATGCTGATAAGCTGCCGGATGGGAAGTTGAGCACA
AAAGGTGTTGGTGCAACTGCACCGGATCCTTCTGAAGCCCAGTCACTTGA
TGATGGTGTTGTAGTTCCCCTAGGAAAACCGAAGGAGCAAAACCGGGAGG
GTGCTTTATTATACAATGAATATATAGTCTACAATGTCGACCAGATAAGG
ATGCGCTACTTGATTCAAGTTAGTTTCAAATATACAAAGTAGTTGTCCGC
ACATTTGTTGATTTACTGCCTGGTTTTGATAGAATTTTGATCTGTAATCT
ATATGTTGTAAATGTATGAAACATATTTGCATTTGCTCTGTAGCCCGTGT
ATGATACCAGGCAGGGGACTTGTTTCATACGTTTTAGACAAAATGAACCC
CATTCCTTTTTCTTCTCTGAAATTCGAAATCCTATA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR012317Poly(ADP-ribose)pol_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003950NAD+ ADP-ribosyltransferase activity