g.arboreum_cottongen_reftransV1_0001582, g.arboreum_cottongen_reftransV1_0001582 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A068V8L3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_144 OS=Coffea canephora GN=GSCOC_T00005043001 PE=4 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 1.182e-104 Identity = 147/196 (75.00%), Postives = 175/196 (89.29%), Query Frame = 2 Query: 2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589 Y++NTHA+THS+Y+VD+VQIF+ +R+GESERFKKFS T NR+LLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY++S GVLLLCEVALGDMAELL A +ADKLP GKLSTKG+GATAPD SE+++L+DGV+VP G+PK+ + +LLYNEYIVYNV+QI+MRY++QV F Y + Sbjct: 435 YMKNTHAKTHSSYSVDIVQIFRASREGESERFKKFSRTHNRLLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYSSSNAHAGVLLLCEVALGDMAELLHADYNADKLPQGKLSTKGIGATAPDSSESRTLEDGVIVPSGRPKQLGTKASLLYNEYIVYNVEQIKMRYVLQVKFNYRR 630
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: K7LGW7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 1.195e-104 Identity = 149/195 (76.41%), Postives = 176/195 (90.26%), Query Frame = 2 Query: 2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583 Y++NTHA+THSNYTVD+VQIF+ +R+GE+ERF+KF+ TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY GVLLLCEVALG+MAELL AK DAD+LP+GKLSTKG+G TAPDPS+A+ L+DG+VVPLGKPK ++ ++G LLYNEYIVYNV+QIRMRY++ V+F + Sbjct: 472 YMKNTHAETHSNYTVDIVQIFRTSREGEAERFRKFASTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYATRTAKDGVLLLCEVALGEMAELLTAKYDADQLPNGKLSTKGLGGTAPDPSKARELEDGLVVPLGKPKTKSGKKGHLLYNEYIVYNVEQIRMRYIVHVNFNF 666
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: K7VS39_MAIZE (Uncharacterized protein OS=Zea mays GN=ZEAMMB73_284458 PE=4 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 8.873e-104 Identity = 145/197 (73.60%), Postives = 169/197 (85.79%), Query Frame = 2 Query: 2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPK-EQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589 Y++NTH +THS YTVD+VQIFKV+R GE+ERF+KF+ T+NRMLLWHGSRL+NW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY + A +GVLLLCEVALGDM ELL A DA+ LP GKLSTKGVG TAP+ E++ DDGVVVPLG+PK E ++ G LLYNEYIVYNVDQIRMRY++ V+F + + Sbjct: 70 YLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFASTRNRMLLWHGSRLSNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLSTKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFKR 266
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: B4FCJ3_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 315.849 bits (808), Expect = 2.673e-103 Identity = 144/197 (73.10%), Postives = 170/197 (86.29%), Query Frame = 2 Query: 2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589 Y++NTH +THS YTVD+VQIFKV+R GE+ERF+KF+ T+NRMLLWHGSRL+NW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY + A +GVLLLCEVALGDM ELL A DA+ LP GKLSTKGVG TAP+ E++ DDGVVVPLG+PK++ ++ G LLYNEYIVYNVDQIRMRY++ V+F + + Sbjct: 137 YLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFASTRNRMLLWHGSRLSNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLSTKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFKR 333
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: M1CY69_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402030070 PE=4 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 2.465e-102 Identity = 149/195 (76.41%), Postives = 170/195 (87.18%), Query Frame = 2 Query: 2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNR-EGALLYNEYIVYNVDQIRMRYLIQVSFKY 583 Y++NTHA+THS+Y VD+VQ+F+ +R+GE+ERF+KFS NRMLLWHGSRLTNW GILSQGLRIAPPEAP+TGYMFGKGVYFADMFS+SA YCY +SA GVLLLCEVALGDM ELL A SDADKLP GKLSTK VGATAPD EAQ L+DGV+VPLG PKE+ + EG LL+NEYIVYNV+QIRMRY+IQV F Y Sbjct: 387 YMKNTHAKTHSSYAVDIVQVFRASRNGETERFQKFSDMSNRMLLWHGSRLTNWAGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSESAIYCYASSAAKNGVLLLCEVALGDMNELLSANSDADKLPSGKLSTKAVGATAPDFKEAQILEDGVIVPLGNPKERPKHEGILLHNEYIVYNVEQIRMRYVIQVEFNY 581
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_HUMAN (Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=PARP3 PE=1 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 7.740e-26 Identity = 75/199 (37.69%), Postives = 100/199 (50.25%), Query Frame = 2 Query: 5 IQNTHAQTHSNYTVDVVQ-IFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYC--YTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLD-DG--VVVPLGKPK--EQNREGALLYNEYIVYNVDQIRMRYLIQVSF 577 IQ QT SN+ +Q I+KV ++GE +RF+ S NR LLWHG+ + IL+ GLRI P +G GKG+YFA SKSA Y A G + L EVALG + P G S G T PDP++ L+ DG VVVP G+P + +EY++Y Q R+RYL++V Sbjct: 339 IQTYLEQTGSNHRCPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRI----MPHSGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVHL 533
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.286e-20 Identity = 62/188 (32.98%), Postives = 94/188 (50.00%), Query Frame = 2 Query: 38 YTVDVVQIFKVTRDGESERFKKFSGTK---NRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQ---AKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK-PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580 Y+ V +I+ V ES + K N++LLW G+R +N L G A P GYMFGK + +D +++A Y +T G L+L +LG + + D ++ + K+ KGVG DPSE + DGV VP GK N++G L YNEY VY+ Q+ + +L+ V ++ Sbjct: 638 YSATVERIYAV----ESSALPSYDEIKKLPNKVLLWCGTRSSNLLRHLRDGFVPAVCHIPVPGYMFGKAIVCSDAAAEAALYGFTAVDRPEGYLVLAVASLGKEIQEITGTPGSEDVKRMEEKKMGVKGVGRKTTDPSEHFTWRDGVTVPCGKLVPSTNKDGPLEYNEYAVYDPKQVSIAFLVGVKYE 821
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_SOYBN (Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.167e-19 Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 2 Query: 35 NYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALG-DMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK-PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580 Y V V IF V + G ++ N++LLW GSR +N L +G A P GYMFGK + +D +++A Y +T G L+L +LG ++ EL DA L + K+ KG G D SE D + VP GK +++ L YNEY VY+ + R+ YL+ V ++ Sbjct: 620 EYGVSVENIFAV-QTGGCPSYEDIIKLPNKVLLWCGSRSSNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDKKRARISYLVGVKYE 802
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.546e-19 Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 2 Query: 35 NYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALG-DMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK-PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580 Y V V IF V + N++LLW GSR +N L +G A P GYMFGK + +D +++A Y +T G L+L +LG ++ EL D L + K+ KG+G D SE D + VP G ++ + L YNEY VY+ Q+R+ YL+ V ++ Sbjct: 607 EYGVSVENIFTVESSA-CPSYADIVKMPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTSLEEKKVGVKGLGKKKTDESEHFVWKDDIKVPCGSIIASEHEDSPLEYNEYAVYDPKQVRISYLVGVKYE 789
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 4.192e-19 Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = 2 Query: 35 NYTVDVVQIFKVTRDG--ESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALG-DMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK--PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFK 580 Y V V +F V D + KK N++LLW GSR +N + +G A P GYMFG+ + +D +++A Y +T G L+L +LG ++ E D L D K+ KG+G + SE D + VP G+ P E +++ L YNEY VY+ Q +R+L++V ++ Sbjct: 620 EYGVSVQNVFAVESDAIPSLDDIKKLP---NKVLLWCGSRSSNLLRHIYKGFLPAVCSLPVPGYMFGRAIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGEEVTEFTSPPEDTKTLEDKKIGVKGLGRKKTEESEHFMWRDDIKVPCGRLVPSE-HKDSPLEYNEYAVYDPKQTSIRFLVEVKYE 802 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001582 ID=g.arboreum_cottongen_reftransV1_0001582; Name=g.arboreum_cottongen_reftransV1_0001582; organism=Gossypium arboreum; type=contig; length=786bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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