g.arboreum_cottongen_reftransV1_0001582, g.arboreum_cottongen_reftransV1_0001582 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001582
Unique Name	g.arboreum_cottongen_reftransV1_0001582
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	786

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0001582:1..786 . Chr4:27184837..27186631 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A067H8C1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006883mg PE=4 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.270e-108
Identity = 158/196 (80.61%), Postives = 179/196 (91.33%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKK-FSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+ NTHA+THS Y+VD+VQIF+V R+GE+ERF+K FS +KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCY + + T GVLLLCEVALGDM+ELL A  DADKLPDGKLSTKGVG TAPDP EA++L+DGV+VPLGKPKEQ N +G LLYNEYIVY+VDQIRMRY++QV+FKY
Sbjct:  431 YLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKY 626

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: W9QMK0_9ROSA (Poly [ADP-ribose] polymerase 2 OS=Morus notabilis GN=L484_011097 PE=4 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.123e-107
Identity = 154/197 (78.17%), Postives = 176/197 (89.34%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+QNTH +THSNYTVD+ Q+F+++++GE +RF+KFS  KNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY +   TTGVLLLCEVALGDMAELL AK DADKLP GKLSTKGVG TAPD SEA++LDDGV+VP GKPKE  + EGALLYNEYIVYNV+QIRMRY++QV+F + +
Sbjct:  441 YMQNTHGKTHSNYTVDIAQLFRLSKEGEEDRFRKFSSAKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASHNATTGVLLLCEVALGDMAELLTAKYDADKLPKGKLSTKGVGRTAPDLSEARALDDGVLVPEGKPKENPHHEGALLYNEYIVYNVEQIRMRYVVQVNFNFKR 637

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: S5Z7I4_SOLTU (Poly [ADP-ribose] polymerase 2 OS=Solanum tuberosum subsp. andigenum GN=PARP 2 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 1.551e-107
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THS Y VD+VQ+F+ +RDGE+ERF+KFS T NRMLLWHGSRLTNW GILSQGLRIAPPEAP+TGYMFGKGVYFADMFSKSANYCY++SA   GVLLLCEVALG+M ELL A  DADKLP GKLSTKGVGATAPDP  +Q L+DGV+VPLG PK Q ++G+LLYNE+IVYNV+QIRMRY+IQV F Y
Sbjct:  371 YMKNTHAKTHSGYAVDIVQVFRASRDGETERFQKFSDTSNRMLLWHGSRLTNWAGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYSSSAAKNGVLLLCEVALGEMNELLSANYDADKLPSGKLSTKGVGATAPDPKASQRLEDGVIVPLGNPKNQRKQGSLLYNEFIVYNVEQIRMRYVIQVEFNY 564

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: U5FQE9_POPTR (Poly [ADP-ribose] polymerase family protein OS=Populus trichocarpa GN=POPTR_0014s12290g PE=4 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 3.942e-107
Identity = 158/195 (81.03%), Postives = 173/195 (88.72%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+QNTHA+THS YTVD+ QIFKV+R+ E+E F+KFS TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY N A   GVLLLCEVALGDMAELL A  DADKLP GKLSTKGVG TAPD S+A++L+DGVVVPLGKPKEQ   +GALLYNEYIVYNV QIRMRY++QV+F Y
Sbjct:  444 YLQNTHAKTHSQYTVDIAQIFKVSREDENESFRKFSNTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANHAAPAGVLLLCEVALGDMAELLYANYDADKLPSGKLSTKGVGRTAPDLSDARALEDGVVVPLGKPKEQRGSKGALLYNEYIVYNVGQIRMRYVVQVNFNY 638

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A022S5Q6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020376mg PE=4 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.442e-106
Identity = 155/195 (79.49%), Postives = 175/195 (89.74%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y +NTHA+THS Y VD+VQIF V+R+GE++RF+KFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYC +  A + GVLLLCEVALGDMAEL+ A S ADKLP GKLSTKGVG TAPD SEAQ+L++GV+VPLGKPKEQ  R+G+LLYNEYIVYNVDQIRMRYL+ V+F +
Sbjct:  504 YTKNTHAKTHSGYDVDIVQIFNVSREGEAQRFEKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCCSTKAASAGVLLLCEVALGDMAELVTANSHADKLPAGKLSTKGVGQTAPDLSEAQTLENGVLVPLGKPKEQPGRKGSLLYNEYIVYNVDQIRMRYLVHVNFNF 698

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A0B2P3A3_GLYSO (Poly [ADP-ribose] polymerase 2 OS=Glycine soja GN=glysoja_010944 PE=4 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.415e-105
Identity = 149/195 (76.41%), Postives = 176/195 (90.26%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THSNYTVD+VQIF+ +R+GE+ERF+KF+ TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY       GVLLLCEVALG+MAELL AK DAD+LP+GKLSTKG+G TAPDPS+A+ L+DG+VVPLGKPK ++ ++G LLYNEYIVYNV+QIRMRY++ V+F +
Sbjct:  373 YMKNTHAETHSNYTVDIVQIFRTSREGEAERFRKFASTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYATRTAKDGVLLLCEVALGEMAELLTAKYDADQLPNGKLSTKGLGGTAPDPSKARELEDGLVVPLGKPKTKSGKKGHLLYNEYIVYNVEQIRMRYIVHVNFNF 567

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A067K8P8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13945 PE=4 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.791e-105
Identity = 154/196 (78.57%), Postives = 174/196 (88.78%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ--NREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+QNTHA+THS YTVD+VQIF++ R+GE++RFKKFS  KNRMLLWHGSRLTNW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY  +A + GVLLLCEVALGDMAE L A  DADKLP GKLSTKGVG+TAPD S A++L+DGV VPLGK K+Q  ++ GALLYNEYIVYNVDQIRMRY++QV+FKY
Sbjct:  407 YMQNTHAKTHSQYTVDIVQIFEIFREGEAQRFKKFSTVKNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYATAAASAGVLLLCEVALGDMAEQLYANYDADKLPQGKLSTKGVGSTAPDLSCAKALEDGVTVPLGKAKQQEGHKVGALLYNEYIVYNVDQIRMRYVVQVNFKY 602

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: M5VIF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002806mg PE=4 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 2.592e-105
Identity = 151/195 (77.44%), Postives = 171/195 (87.69%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNR-EGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+ NTHA+THSNY VD++QIF+ +++GE ERF+KFS  KNRMLLWHGSRLTNW GILSQGLRIAPPEAP TGYMFGKG+YFADMFSKSANYCY     T GVLLLCEVALGDMAELL AK DADKLP+GKLSTKGVG T PD S+A+ LDDGVVVPLGKPKE +  +GALLYNEYIVYNV+QIRMRY++QV+F +
Sbjct:  437 YLHNTHAKTHSNYAVDIIQIFRASKEGEVERFRKFSSMKNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGIYFADMFSKSANYCYATDGCTAGVLLLCEVALGDMAELLTAKYDADKLPEGKLSTKGVGGTEPDLSQARLLDDGVVVPLGKPKENSEPKGALLYNEYIVYNVEQIRMRYVVQVNFHF 631

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: K4CMJ2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g074740.2 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 3.890e-105
Identity = 150/194 (77.32%), Postives = 171/194 (88.14%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THS Y VD+VQ+F+ +RDGE+ERF+KFS T NRMLLWHGSRLTNW GILSQGLRIAPPEAP+TGYMFGKGVYFADMFSKSANYCY +SA   GVLLLCEVALG+M ELL A  DADKLP GKLSTKGVGATAPDP  +Q L+DGV+VPLG PK Q ++G+LLYNE+IVYNV+QIRMRY+IQV F Y
Sbjct:  563 YMKNTHAKTHSGYAVDIVQVFRASRDGETERFQKFSDTSNRMLLWHGSRLTNWAGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASSAAKNGVLLLCEVALGEMNELLSANYDADKLPWGKLSTKGVGATAPDPKASQILEDGVIVPLGNPKNQRKQGSLLYNEFIVYNVEQIRMRYVIQVEFNY 756

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: M1CY68_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401030070 PE=4 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 8.466e-105
Identity = 148/194 (76.29%), Postives = 171/194 (88.14%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THS Y V++VQ+F+ +RDGE+ERF+KFS T NRMLLWHGSRLTNW GILSQGLRIAPPEAP+TGYMFGKGVYFADMFSKSANYCY +SA   GVLLLCEVALG+M ELL A  DADKLP GKLSTKGVGATAPDP  +Q L+DGV+VPLG PK Q ++G+LLYNE+IVYNV+QIRMRY+IQV F +
Sbjct:  565 YMKNTHAKTHSGYAVEIVQVFRASRDGETERFQKFSDTSNRMLLWHGSRLTNWAGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASSAAKNGVLLLCEVALGEMNELLSANYDADKLPSGKLSTKGVGATAPDPKASQRLEDGVIVPLGNPKNQRKQGSLLYNEFIVYNVEQIRMRYVIQVEFNH 758

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP2_ARATH (Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.353e-100
Identity = 144/195 (73.85%), Postives = 169/195 (86.67%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+THS YTV++ Q+F+ +R  E++RF++FS +KNRMLLWHGSRLTNW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY N+    GVLLLCEVALGDM ELL +  +AD LP GKLSTKGVG TAP+PSEAQ+L+DGVVVPLGKP E++  +G LLYNEYIVYNV+QI+MRY+IQV F Y
Sbjct:  441 YMENTHAKTHSGYTVEIAQLFRASRAVEADRFQQFSSSKNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANTGANDGVLLLCEVALGDMNELLYSDYNADNLPPGKLSTKGVGKTAPNPSEAQTLEDGVVVPLGKPVERSCSKGMLLYNEYIVYNVEQIKMRYVIQVKFNY 635

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP2_MAIZE (Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 3.079e-100
Identity = 142/197 (72.08%), Postives = 169/197 (85.79%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y++NTH +THS YTVD+VQIFKV+R GE+ERF+KF+ T+NRMLLWHGSRL+NW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY + A  +GVLLLCEVALGDM ELL A  DA+ LP GKL +KGVG TAP+  E++  DDGVVVPLG+PK++ ++ G LLYNEYIVYNVDQIRMRY++ V+F + +
Sbjct:  456 YLRNTHGKTHSGYTVDIVQIFKVSRHGETERFQKFASTRNRMLLWHGSRLSNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGDMNELLNADYDANNLPKGKLRSKGVGQTAPNMVESKVADDGVVVPLGEPKQEPSKRGGLLYNEYIVYNVDQIRMRYVLHVNFNFKR 652

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PRP2A_ORYSJ (Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 9.900e-100
Identity = 145/197 (73.60%), Postives = 167/197 (84.77%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPK-EQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+ NTH +TH++YTVDVVQIFKV+R GE ERF+KF+   NRMLLWHGSRLTNW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCY + A  +GVLLLCEVALG+M ELL A  DA+ LP GKLSTKGVG T P+ +E++  DDGVVVPLGKPK E ++ G+LLYNE+IVYNVDQIRMRY++ VSF + K
Sbjct:  463 YLANTHGKTHTSYTVDVVQIFKVSRHGEMERFQKFATAGNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGEMNELLNADYDANNLPKGKLSTKGVGQTEPNTAESKITDDGVVVPLGKPKAEPSKRGSLLYNEFIVYNVDQIRMRYVLHVSFNFKK 659

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PRP2B_ORYSJ (Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica GN=PARP2-B PE=3 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 1.669e-93
Identity = 135/197 (68.53%), Postives = 163/197 (82.74%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKP-KEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+ NTH +TH+ YTVD+VQIFKV+R GE ERF+KF+   NRMLLWHGSRLTNW GILSQGLRIAPPEAP +G+MFGKGVYFADMFSKSANYC  + A  +GV+LLCEVALG+M ELL     AD LP+GKLSTKGVG T P+ +E++  DDG+V+PLGKP K  +R G+L+YNEYIVYNVDQIRMRY++ V+F + +
Sbjct:  407 YLTNTHGKTHTGYTVDIVQIFKVSRLGEMERFQKFASAGNRMLLWHGSRLTNWAGILSQGLRIAPPEAPISGFMFGKGVYFADMFSKSANYCCASEACKSGVMLLCEVALGEMNELLYGDFGADNLPNGKLSTKGVGQTEPNIAESKITDDGMVIPLGKPEKVPSRRGSLMYNEYIVYNVDQIRMRYILNVNFNFKR 603

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1 SV=4)

HSP 1 Score: 238.039 bits (606), Expect = 3.144e-70
Identity = 117/196 (59.69%), Postives = 147/196 (75.00%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK--PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y ++V+ IFK+ R+GES+R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+T+     G++LL EVALG+M EL  A S   KLP GK S KG+G TAPDPS + +L DGV VPLG   P   N +  LLYNEYIVY++ Q+ ++YL+++ F +
Sbjct:  817 YVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHA-SHISKLPKGKHSVKGLGKTAPDPSASITL-DGVEVPLGTGIPSGVN-DTCLLYNEYIVYDIAQVNLKYLLKLKFNF 1009

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.737e-70
Identity = 116/195 (59.49%), Postives = 145/195 (74.36%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y ++V++IFK+ R+GE +R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+       G++LL EVALG+M E L+A S   KLP GK S KG+G TAPDPS    L DGV VPLGK    N  + +LLYNEYIVY++ Q+ ++YL+++ F Y
Sbjct:  800 YVKNTHADTHNAYDLEVLEIFKIDREGEYQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHAMPGSPIGLILLGEVALGNMHE-LKAASQITKLPKGKHSVKGLGRTAPDPSATVQL-DGVDVPLGKGTSANISDTSLLYNEYIVYDIAQVNLKYLLKLKFNY 992

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP_SARPE (Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.585e-70
Identity = 112/195 (57.44%), Postives = 146/195 (74.87%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKP-KEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA+TH  Y ++VV IFKV R GE+ R+K F    NR LLWHGSRLTN+ GILS GL+IAPPEAP TGYMFGKG+YFADM SKSANYC T+   +TG++LL EVALGDM E   AK    KLP+ K S  G G T P+PSE+   +DGV +PLGKP    + + +LLYNE+I+Y++ Q+ ++Y+++++FKY
Sbjct:  802 YVKNTHAETHKLYDLEVVDIFKVARQGEARRYKPFKKLHNRRLLWHGSRLTNFAGILSHGLKIAPPEAPVTGYMFGKGIYFADMVSKSANYCCTSHHNSTGLMLLSEVALGDMMECTAAKY-VTKLPNDKHSCFGRGRTMPNPSESIIREDGVEIPLGKPITNDSLKSSLLYNEFIIYDIAQVNIQYMLRMNFKY 995

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.872e-69
Identity = 115/196 (58.67%), Postives = 147/196 (75.00%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK--PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y ++V+ IFK+ R+GES+R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+T+     G+++L EVALG+M EL  A S   KLP GK S KG+G T PDPS + +L +GV VPLG   P   N + ALLYNEYIVY++ Q+ ++YL+++ F +
Sbjct:  816 YVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLIMLGEVALGNMYELKHA-SHISKLPKGKHSVKGLGKTTPDPSASITL-EGVEVPLGTGIPSGVN-DTALLYNEYIVYDIAQVNLKYLLKLKFNF 1008

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 233.802 bits (595), Expect = 9.936e-69
Identity = 114/195 (58.46%), Postives = 143/195 (73.33%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y ++V+ IFK+ R+GE +R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+T+     G++LL EVALG+M EL  A S   KLP GK S KG+G T PDPS   SL DGV VPLG        + +LLYNEYIVY++ Q+ ++YL+++ F +
Sbjct:  817 YVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHA-SHISKLPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNF 1009

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 1.019e-68
Identity = 115/196 (58.67%), Postives = 146/196 (74.49%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGK--PKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y ++V+ IFK+ R+GES+R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+T+     G++LL EVALG+M EL  A S   KLP GK S KG+G T PDPS + +L +GV VPLG   P   N +  LLYNEYIVY++ Q+ ++YL+++ F +
Sbjct:  816 YVKNTHATTHNAYDLEVMDIFKIEREGESQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHA-SHISKLPKGKHSVKGLGKTTPDPSASITL-EGVEVPLGTGIPSGVN-DTCLLYNEYIVYDIAQVNLKYLLKLKFNF 1008

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067H8C1_CITSI	2.270e-108	80.61	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
W9QMK0_9ROSA	1.123e-107	78.17	Poly [ADP-ribose] polymerase 2 OS=Morus notabilis ...	[more]
S5Z7I4_SOLTU	1.551e-107	77.32	Poly [ADP-ribose] polymerase 2 OS=Solanum tuberosu...	[more]
U5FQE9_POPTR	3.942e-107	81.03	Poly [ADP-ribose] polymerase family protein OS=Pop...	[more]
A0A022S5Q6_ERYGU	5.442e-106	79.49	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
A0A0B2P3A3_GLYSO	1.415e-105	76.41	Poly [ADP-ribose] polymerase 2 OS=Glycine soja GN=...	[more]
A0A067K8P8_JATCU	1.791e-105	78.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
M5VIF4_PRUPE	2.592e-105	77.44	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
K4CMJ2_SOLLC	3.890e-105	77.32	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
M1CY68_SOLTU	8.466e-105	76.29	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
PARP2_ARATH	1.353e-100	73.85	Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thal...	[more]
PARP2_MAIZE	3.079e-100	72.08	Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP...	[more]
PRP2A_ORYSJ	9.900e-100	73.60	Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa s...	[more]
PRP2B_ORYSJ	1.669e-93	68.53	Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa s...	[more]
PARP1_RAT	3.144e-70	59.69	Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicu...	[more]
PARP1_XENLA	3.737e-70	59.49	Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenop...	[more]
PARP_SARPE	7.585e-70	57.44	Poly [ADP-ribose] polymerase OS=Sarcophaga peregri...	[more]
PARP1_MOUSE	2.872e-69	58.67	Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=...	[more]
PARP1_HUMAN	9.936e-69	58.46	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=...	[more]
PARP1_CRIGR	1.019e-68	58.67	Poly [ADP-ribose] polymerase 1 OS=Cricetulus grise...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	PFAM	PF00644	PARP	coord: 1..151 e-value: 9.5E-58 score: 195.1
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	GENE3D	3.90.228.10		coord: 1..152 e-value: 3.8E-65 score: 219.0
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	PROSITE	PS51059	PARP_CATALYTIC	coord: 1..155 score: 77.553
None	No IPR available	PANTHER	PTHR10459	DNA LIGASE	coord: 6..152
None	No IPR available	PANTHER	PTHR10459:SF59	SUBFAMILY NOT NAMED	coord: 6..152
None	No IPR available	SUPERFAMILY	56399	ADP-ribosylation	coord: 1..153

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001582 ID=g.arboreum_cottongen_reftransV1_0001582; Name=g.arboreum_cottongen_reftransV1_0001582; organism=Gossypium arboreum; type=contig; length=786bp
GTATATTCAGAATACTCATGCTCAGACACATTCAAATTATACAGTTGATG
TTGTTCAAATATTCAAGGTGACAAGAGACGGTGAAAGTGAACGCTTTAAA
AAGTTTTCTGGAACAAAAAATAGAATGCTGTTGTGGCATGGTTCTCGGCT
TACTAACTGGACTGGCATTCTGTCCCAAGGTTTGCGCATTGCTCCACCTG
AAGCGCCTGCCACGGGTTATATGTTTGGGAAGGGGGTTTACTTTGCTGAT
ATGTTCTCCAAAAGTGCAAATTATTGCTATACTAATTCTGCCTTCACAAC
TGGGGTGTTGCTTCTATGTGAGGTTGCCCTGGGTGACATGGCTGAGCTTC
TACAAGCTAAAAGCGATGCTGATAAGCTGCCGGATGGGAAGTTGAGCACA
AAAGGTGTTGGTGCAACTGCACCGGATCCTTCTGAAGCCCAGTCACTTGA
TGATGGTGTTGTAGTTCCCCTAGGAAAACCGAAGGAGCAAAACCGGGAGG
GTGCTTTATTATACAATGAATATATAGTCTACAATGTCGACCAGATAAGG
ATGCGCTACTTGATTCAAGTTAGTTTCAAATATACAAAGTAGTTGTCCGC
ACATTTGTTGATTTACTGCCTGGTTTTGATAGAATTTTGATCTGTAATCT
ATATGTTGTAAATGTATGAAACATATTTGCATTTGCTCTGTAGCCCGTGT
ATGATACCAGGCAGGGGACTTGTTTCATACGTTTTAGACAAAATGAACCC
CATTCCTTTTTCTTCTCTGAAATTCGAAATCCTATA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR012317	Poly(ADP-ribose)pol_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003950	NAD+ ADP-ribosyltransferase activity

Search form

g.arboreum_cottongen_reftransV1_0001582, g.arboreum_cottongen_reftransV1_0001582 (contig) Gossypium arboreum

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