g.arboreum_cottongen_reftransV1_0001582, g.arboreum_cottongen_reftransV1_0001582 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001582
Unique Name	g.arboreum_cottongen_reftransV1_0001582
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	786

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0001582:1..786 . Chr4:27184837..27186631 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A0B0NNH3_GOSAR (Poly [ADP-ribose] polymerase 2-like protein OS=Gossypium arboreum GN=F383_01807 PE=4 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 1.485e-138
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK
Sbjct:  477 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 672

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A0D2SIY4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G127600 PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 7.109e-137
Identity = 191/196 (97.45%), Postives = 194/196 (98.98%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            YIQNTHAQTHSNYTVDVVQIF VTRDGESERF+KFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ R+GALLYNEY+VYNVDQIRMRYLIQVSFKYTK
Sbjct:  269 YIQNTHAQTHSNYTVDVVQIFAVTRDGESERFEKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQKRKGALLYNEYVVYNVDQIRMRYLIQVSFKYTK 464

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A0D2TE00_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G127600 PE=4 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.892e-135
Identity = 191/196 (97.45%), Postives = 194/196 (98.98%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            YIQNTHAQTHSNYTVDVVQIF VTRDGESERF+KFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ R+GALLYNEY+VYNVDQIRMRYLIQVSFKYTK
Sbjct:  452 YIQNTHAQTHSNYTVDVVQIFAVTRDGESERFEKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQKRKGALLYNEYVVYNVDQIRMRYLIQVSFKYTK 647

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A0D2SCA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G127600 PE=4 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 8.951e-135
Identity = 191/196 (97.45%), Postives = 194/196 (98.98%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            YIQNTHAQTHSNYTVDVVQIF VTRDGESERF+KFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ R+GALLYNEY+VYNVDQIRMRYLIQVSFKYTK
Sbjct:  502 YIQNTHAQTHSNYTVDVVQIFAVTRDGESERFEKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQKRKGALLYNEYVVYNVDQIRMRYLIQVSFKYTK 697

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A061DRS0_THECC (Poly(ADP-ribose) polymerase isoform 1 OS=Theobroma cacao GN=TCM_004671 PE=4 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 7.079e-125
Identity = 177/196 (90.31%), Postives = 187/196 (95.41%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y +NTHA+THS YTVD+VQIFKV R+GE E FKKFS TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCYT+S+FTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQ+LDDGV+VPLGKPKEQ REGAL YNEYIVYNVDQIRMRYL+QV+FKYTK
Sbjct:  448 YSRNTHAKTHSQYTVDIVQIFKVAREGEIECFKKFSATKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYTSSSFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQTLDDGVIVPLGKPKEQKREGALWYNEYIVYNVDQIRMRYLVQVNFKYTK 643

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A059AYD3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01106 PE=4 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 4.096e-114
Identity = 164/197 (83.25%), Postives = 182/197 (92.39%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+ NTHA+THS+YTVD+VQIF+V+R+GE+ERF KFS T NRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCY NSA   GVLLLCEVALGDMAELL AK DADKLP GKLSTKGVGAT+PDPSEAQ+L++GVVVPLG+PKEQ+ R+GALLYNEYIVYNVDQIRMRY++QV+F   K
Sbjct:  443 YMHNTHAKTHSSYTVDIVQIFRVSREGETERFSKFSTTSNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYANSAAAAGVLLLCEVALGDMAELLHAKYDADKLPAGKLSTKGVGATSPDPSEAQALEEGVVVPLGRPKEQSERKGALLYNEYIVYNVDQIRMRYVVQVNFNIGK 639

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: D7U2A8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00630 PE=4 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 2.145e-110
Identity = 156/197 (79.19%), Postives = 180/197 (91.37%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPK-EQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y++NTHA+THSNYTVD+VQIF+V+R+GE ERF+KFS TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY Y + A TTGVL+LCEVALGDMAELL A  +ADKLP+GKLSTKG+GATAPDPSEAQ+ ++G+VVPLGKPK   + +G LLYNEYIVYNVDQIRMRY++QV+F + +
Sbjct:  352 YMENTHAETHSNYTVDIVQIFRVSREGEVERFRKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYSYPSCAMTTGVLVLCEVALGDMAELLTANCNADKLPEGKLSTKGIGATAPDPSEAQAFENGIVVPLGKPKLRSDPKGGLLYNEYIVYNVDQIRMRYVVQVTFNFKR 548

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: V4U0Q6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019312mg PE=4 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 2.832e-110
Identity = 158/195 (81.03%), Postives = 179/195 (91.79%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+ NTHA+THS Y+VD+VQIF+V R+GE+ERF+KFS +KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCY + + T GVLLLCEVALGDM+ELL A  DADKLPDGKLSTKGVG TAPDP EA++L+DGV+VPLGKPKEQ N +G LLYNEYIVY+VDQIRMRY++QV+FKY
Sbjct:  431 YLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKY 625

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A067HGZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006883mg PE=4 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 3.291e-110
Identity = 158/195 (81.03%), Postives = 179/195 (91.79%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ-NREGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+ NTHA+THS Y+VD+VQIF+V R+GE+ERF+KFS +KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCY + + T GVLLLCEVALGDM+ELL A  DADKLPDGKLSTKGVG TAPDP EA++L+DGV+VPLGKPKEQ N +G LLYNEYIVY+VDQIRMRY++QV+FKY
Sbjct:  431 YLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKY 625

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Match: A0A0A0KAX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397590 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 2.071e-108
Identity = 159/195 (81.54%), Postives = 175/195 (89.74%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQNR-EGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y QNTHA+THS+YTVD+V+IF+V+R GE ERFKKFS TKNR LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCY + A TTGVLLLCEVALGDM ELL A  +ADKLP+GKLSTKGVG T P+ SEA +LDDGVVVPLGKPK+  R +GALLYNEYIVYNVDQIRMRYL+QV+F +
Sbjct:  466 YTQNTHAKTHSDYTVDIVRIFRVSRKGEDERFKKFSNTKNRKLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASRAATTGVLLLCEVALGDMVELLDADYNADKLPEGKLSTKGVGQTEPNHSEAMTLDDGVVVPLGKPKQSQRGKGALLYNEYIVYNVDQIRMRYLLQVNFHF 660

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP_DROME (Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.522e-68
Identity = 111/196 (56.63%), Postives = 144/196 (73.47%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKP-KEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYT 586
            Y++NTHA TH +Y + +V +FKV+R GE+ RFK F    NR LLWHGSRLTN+ GILS GLRIAPPEAP TGYMFGKG+YFADM SKSANYC T+   +TG++LL EVALGDM E   AK   +KL + K S  G G T PDP+++    DGV +P G+   +++ + +LLYNEYIVY+V Q+ ++YL ++ FKY+
Sbjct:  799 YVKNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTNFVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGLMLLSEVALGDMMECTSAKY-INKLSNNKHSCFGRGRTMPDPTKSYIRSDGVEIPYGETITDEHLKSSLLYNEYIVYDVAQVNIQYLFRMEFKYS 993

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 4.471e-68
Identity = 112/195 (57.44%), Postives = 143/195 (73.33%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y ++VV IFK+ R+GES+R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+T+     G++LL E ALG+M EL  A+    KLP GK S KG+G T PDPS + ++ DGV VPLG        +  LLYNEYIVY++ Q+ ++YL+++ F +
Sbjct:  819 YVKNTHATTHNAYDLEVVDIFKIEREGESQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEAALGNMYELKHARH-ISKLPKGKHSVKGLGKTTPDPSASITV-DGVEVPLGTGISSGVNDTCLLYNEYIVYDIAQVHLKYLLKLKFNF 1011

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP2_HUMAN (Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.648e-67
Identity = 113/198 (57.07%), Postives = 143/198 (72.22%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ---NREG-ALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+Q+THA THS+YT+ ++ +F+V +DGE E F++     NRMLLWHGSR++NW GILS GLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ +    TG+LLL EVALG   ELL+A   A+ L  GK STKG+G  AP  +   +L +G  VPLG   +    N +G  L YNEYIVYN +Q+RMRYL++V F +
Sbjct:  385 YLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFRE--DLHNRMLLWHGSRMSNWVGILSHGLRIAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 579

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP2_MOUSE (Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=Parp2 PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.765e-66
Identity = 110/198 (55.56%), Postives = 142/198 (71.72%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQ---NREG-ALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y+Q+THA TH +YT+ ++ +F+V ++GE E F++     NRMLLWHGSRL+NW GILS GLR+APPEAP TGYMFGKG+YFADM SKSANYC+ +    TG+LLL EVALG   ELL+A   A  L  GK STKG+G  AP P+   +L +G  VPLG   +    N EG  L YNE+IVY+ +Q+RMRYL+++ F +
Sbjct:  361 YLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFRE--DLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNF 555

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.131e-66
Identity = 109/198 (55.05%), Postives = 142/198 (71.72%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGT-KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+ NTHA TH ++++++ ++F + RDGE  ++ ++     N+MLLWHGSRLTN+ GILSQGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YCY +     G++LL EVALGDM EL +A S  DK P GK STKG+G T P  SE     D VVVP GKP   + R   L+YNEYIVYN  Q++M++L++V F + +
Sbjct:  784 YLLNTHAPTHKDWSLELEEVFSLDRDGELNKYSRYKNNLHNKMLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGLYFADLVSKSAQYCYVDRNNPVGLMLLSEVALGDMYELKKATS-MDKPPRGKHSTKGLGKTVPLESEFVKWRDDVVVPCGKPVPSSIRSSELMYNEYIVYNTSQVKMQFLLKVRFHHKR 980

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.033e-65
Identity = 109/198 (55.05%), Postives = 141/198 (71.21%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGT-KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+ NTHA TH  +++++ ++F + RDGE  ++ ++     N+MLLWHGSRLTN+ GILSQGLRIAPPEAP TGYMFGKG+YFAD+ SKSA YCY +     G++LL EVALGDM EL +A S  DK P GK STKG+G T P  SE     D VVVP GKP   + +   L+YNEYIVYN  Q++M+YL++V F + +
Sbjct:  781 YLLNTHAPTHKEWSLELEEVFSLDRDGEFSKYSRYKNNLHNKMLLWHGSRLTNYVGILSQGLRIAPPEAPVTGYMFGKGLYFADLVSKSAQYCYVDRKNPVGLMLLSEVALGDMYELKKATS-MDKPPRGKHSTKGLGKTVPLESEFAKWRDDVVVPCGKPVPASIKTSELMYNEYIVYNTSQVKMQYLLKVRFHHKR 977

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_CHICK (Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 4.406e-65
Identity = 117/195 (60.00%), Postives = 145/195 (74.36%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKPKEQN-REGALLYNEYIVYNVDQIRMRYLIQVSFKY 583
            Y++NTHA TH+ Y + VV+IF++ R+GES+R+K F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+T+ A   G++LL EVALG+M EL  A S   KLP GK S KG+G TAPDP+   +L DGV VPLG        +  LLYNEYIVY+V Q+ ++YL+++ F Y
Sbjct:  814 YVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNA-SHITKLPKGKHSVKGLGKTAPDPTATTTL-DGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNY 1006

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 2.149e-60
Identity = 103/201 (51.24%), Postives = 141/201 (70.15%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTK----NRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADKLPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKP-KEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK 589
            Y+  THA TH+ +++++ ++F + R+GE   F K++  +    N+MLLWHGSRLTN+ GIL+QGLRIAPPEAPATGYMFGKG+YFAD+ SKSA YCYT      G++LL EVALG++ EL +AK   DK P GK STKG+G   P  SE       V VP GKP   + +   L+YNEYIVY+  Q+++++L++V FK+ +
Sbjct:  787 YLNTTHAPTHTEWSLELEEVFALEREGE---FDKYAPHREKLGNKMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTCKKNPVGLMLLSEVALGEIHELTKAKY-MDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASELMYNEYIVYDTAQVKLQFLLKVRFKHKR 983

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PME1_CAEEL (Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditis elegans GN=pme-1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.222e-51
Identity = 99/204 (48.53%), Postives = 136/204 (66.67%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYTNSAFTTGVLLLCEVALGDMAELLQAKSDADK-LPDGKLSTKGVGATAPDPSEAQSLDDGVVVPLGKP-----KEQNREGALLYNEYIVYNVDQIRMRYLIQVSFKYTK*L 595
            Y++NTH  TH +  V+++ I K+ RD ES +FK+  G  NR LLWHGS   N+ GIL QGLRIAPPEAP +GYMFGKGVYFADMFSKS  YC  N A     LLLC+VALG++ +L+ +K+ + + LP G  S +G+G   P    + +  DG  +PLG        +Q+ +  LLYNE+IVY+VDQI+++YL++V   + + L
Sbjct:  746 YLKNTHGATH-DLKVELIDILKLNRDNESSKFKRHIG--NRRLLWHGSGKMNFAGILGQGLRIAPPEAPVSGYMFGKGVYFADMFSKSFFYCRAN-AKEEAYLLLCDVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNHPDGYTIPLGLTYMQLQGKQDVDYHLLYNEFIVYDVDQIQLKYLVRVKMHHARHL 945

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Match: PARP1_ONCMA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Oncorhynchus masou GN=parp1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.767e-31
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 2

Query:    2 YIQNTHAQTHSNYTVDVVQIFKVTRDGESERFKKFSGTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGK 232
            Y++NTHA TH+ YT+ V +IFK+ R+GE ++++ F    NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGK
Sbjct:   59 YVKNTHAATHNTYTLVVEEIFKIVREGEYQKYRPFQDLPNRQLLWHGSRATNYAGILSQGLRIAPPEAPVTGYMFGK 135

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NNH3_GOSAR	1.485e-138	100.00	Poly [ADP-ribose] polymerase 2-like protein OS=Gos...	[more]
A0A0D2SIY4_GOSRA	7.109e-137	97.45	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TE00_GOSRA	1.892e-135	97.45	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SCA8_GOSRA	8.951e-135	97.45	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DRS0_THECC	7.079e-125	90.31	Poly(ADP-ribose) polymerase isoform 1 OS=Theobroma...	[more]
A0A059AYD3_EUCGR	4.096e-114	83.25	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
D7U2A8_VITVI	2.145e-110	79.19	Putative uncharacterized protein OS=Vitis vinifera...	[more]
V4U0Q6_9ROSI	2.832e-110	81.03	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067HGZ9_CITSI	3.291e-110	81.03	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A0A0KAX5_CUCSA	2.071e-108	81.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0001582 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
PARP_DROME	1.522e-68	56.63	Poly [ADP-ribose] polymerase OS=Drosophila melanog...	[more]
PARP1_BOVIN	4.471e-68	57.44	Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PA...	[more]
PARP2_HUMAN	2.648e-67	57.07	Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=...	[more]
PARP2_MOUSE	4.765e-66	55.56	Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=...	[more]
PARP1_MAIZE	7.131e-66	55.05	Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP...	[more]
PARP1_ORYSJ	1.033e-65	55.05	Poly [ADP-ribose] polymerase 1 OS=Oryza sativa sub...	[more]
PARP1_CHICK	4.406e-65	60.00	Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN...	[more]
PARP1_ARATH	2.149e-60	51.24	Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thal...	[more]
PME1_CAEEL	1.222e-51	48.53	Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditi...	[more]
PARP1_ONCMA	1.767e-31	64.94	Poly [ADP-ribose] polymerase 1 (Fragment) OS=Oncor...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	PFAM	PF00644	PARP	coord: 1..151 e-value: 9.5E-58 score: 195.1
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	GENE3D	3.90.228.10		coord: 1..152 e-value: 3.8E-65 score: 219.0
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	PROSITE	PS51059	PARP_CATALYTIC	coord: 1..155 score: 77.553
None	No IPR available	PANTHER	PTHR10459	DNA LIGASE	coord: 6..152
None	No IPR available	PANTHER	PTHR10459:SF59	SUBFAMILY NOT NAMED	coord: 6..152
None	No IPR available	SUPERFAMILY	56399	ADP-ribosylation	coord: 1..153

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001582 ID=g.arboreum_cottongen_reftransV1_0001582; Name=g.arboreum_cottongen_reftransV1_0001582; organism=Gossypium arboreum; type=contig; length=786bp
GTATATTCAGAATACTCATGCTCAGACACATTCAAATTATACAGTTGATG
TTGTTCAAATATTCAAGGTGACAAGAGACGGTGAAAGTGAACGCTTTAAA
AAGTTTTCTGGAACAAAAAATAGAATGCTGTTGTGGCATGGTTCTCGGCT
TACTAACTGGACTGGCATTCTGTCCCAAGGTTTGCGCATTGCTCCACCTG
AAGCGCCTGCCACGGGTTATATGTTTGGGAAGGGGGTTTACTTTGCTGAT
ATGTTCTCCAAAAGTGCAAATTATTGCTATACTAATTCTGCCTTCACAAC
TGGGGTGTTGCTTCTATGTGAGGTTGCCCTGGGTGACATGGCTGAGCTTC
TACAAGCTAAAAGCGATGCTGATAAGCTGCCGGATGGGAAGTTGAGCACA
AAAGGTGTTGGTGCAACTGCACCGGATCCTTCTGAAGCCCAGTCACTTGA
TGATGGTGTTGTAGTTCCCCTAGGAAAACCGAAGGAGCAAAACCGGGAGG
GTGCTTTATTATACAATGAATATATAGTCTACAATGTCGACCAGATAAGG
ATGCGCTACTTGATTCAAGTTAGTTTCAAATATACAAAGTAGTTGTCCGC
ACATTTGTTGATTTACTGCCTGGTTTTGATAGAATTTTGATCTGTAATCT
ATATGTTGTAAATGTATGAAACATATTTGCATTTGCTCTGTAGCCCGTGT
ATGATACCAGGCAGGGGACTTGTTTCATACGTTTTAGACAAAATGAACCC
CATTCCTTTTTCTTCTCTGAAATTCGAAATCCTATA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR012317	Poly(ADP-ribose)pol_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003950	NAD+ ADP-ribosyltransferase activity

Search form

g.arboreum_cottongen_reftransV1_0001582, g.arboreum_cottongen_reftransV1_0001582 (contig) Gossypium arboreum

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