g.arboreum_cottongen_reftransV1_0003764, g.arboreum_cottongen_reftransV1_0003764 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003764
Unique Name	g.arboreum_cottongen_reftransV1_0003764
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	328

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0003764:1..328 . Chr11:8263914..8264241 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0B0NV66_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21470 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.518e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2S171_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.311e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2QFM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.390e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2S8F8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.414e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: B9SFU3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0723200 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.066e-64
Identity = 95/109 (87.16%), Postives = 101/109 (92.66%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYND F GAFCLRSHQNGV+RFNCADSLDRTNAAS+FGALQVFVEQCRRLGISLDSD  YGY  V ++GGY+APLPPGWEKR+D VTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDDFAGAFCLRSHQNGVIRFNCADSLDRTNAASYFGALQVFVEQCRRLGISLDSDLGYGYQSVGDHGGYSAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: G3LNV9_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella rubella PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.504e-63
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: D6PQK2_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella grandiflora PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.703e-63
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: K4CK98_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g044400.1 PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 6.248e-63
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IY+D  +GAFCLRSHQNGV+R+NCADSLDRTNAASFFGALQVF+EQCRRLGISLDSD  YGY   NN GGYTAPLPPGWEKRTD VTGKTY+IDHNTRTTTWNHPCPDK
Sbjct:  435 IYSDDIDGAFCLRSHQNGVIRYNCADSLDRTNAASFFGALQVFMEQCRRLGISLDSDLAYGYQSYNNNGGYTAPLPPGWEKRTDAVTGKTYFIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: G3LNV4_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella rubella PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.041e-63
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+  NN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSANNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: D6PQK7_9BRAS (AT3G59770-like protein (Fragment) OS=Neslia paniculata PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.012e-62
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D  EGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLD+D  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDIEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDTDLGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: SAC9_ARATH (Probable phosphoinositide phosphatase SAC9 OS=Arabidopsis thaliana GN=SAC9 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.044e-61
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D  EGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLD+D  YG++ VNN GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:  439 DDIEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDTDLGYGHNSVNNQGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 544

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSP5 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.646e-9
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            LPPGWE+RTD   G+TYY+DHNTRTTTW  P  D+
Sbjct:  231 LPPGWERRTDNF-GRTYYVDHNTRTTTWKRPTLDQ 264

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.329e-8
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 2

Query:  212 YTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPD 325
            +  PLPPGWEKRTD   G+ YY+DHNTRTTTW  P  +
Sbjct:  328 WERPLPPGWEKRTDP-RGRFYYVDHNTRTTTWQRPTAE 364

HSP 2 Score: 50.8322 bits (120), Expect = 6.249e-7
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            PLPPGWEKR D   G+ YY++HNTRTT W  P
Sbjct:  406 PLPPGWEKRQD--NGRVYYVNHNTRTTQWEDP 435

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub3 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.720e-8
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 2

Query:  188 HPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            H ++++      LPPGWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  226 HIMSSFEDQYGRLPPGWERRADSL-GRTYYVDHNTRTTTWTRPA 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.817e-8
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 2

Query:  212 YTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPD 325
            +  PLPPGWEKRTD   G+ YY+DHNTRTTTW  P  +
Sbjct:  328 WERPLPPGWEKRTDP-RGRFYYVDHNTRTTTWQRPTAE 364

HSP 2 Score: 50.447 bits (119), Expect = 8.122e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 2

Query:  218 APLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
             PLPPGWEKR D   G+ YY++HNTRTT W  P
Sbjct:  405 GPLPPGWEKRQD--NGRVYYVNHNTRTTQWEDP 435

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: BAG3_MOUSE (BAG family molecular chaperone regulator 3 OS=Mus musculus GN=Bag3 PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 2.208e-8
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            PLPPGWE + D  TG  +++DHN+RTTTWN P
Sbjct:   23 PLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDP 54

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: BAG3_HUMAN (BAG family molecular chaperone regulator 3 OS=Homo sapiens GN=BAG3 PE=1 SV=3)

HSP 1 Score: 54.6842 bits (130), Expect = 2.856e-8
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            PLPPGWE + D  TG  +++DHN+RTTTWN P
Sbjct:   21 PLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDP 52

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 3.294e-8
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 2

Query:  221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            PLPPGWE+R D+  G+ YY+DHNTRTTTW  P
Sbjct:  378 PLPPGWERRVDD-RGRVYYVDHNTRTTTWQRP 408

HSP 2 Score: 51.2174 bits (121), Expect = 4.578e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 2

Query:  215 TAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCP 322
            T  LP GWE+R D   G+TYY+DHNTRTTTW  P P
Sbjct:  344 TEALPSGWEQRKDP-HGRTYYVDHNTRTTTWERPQP 378

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub1 PE=1 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 6.109e-8
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            LPPGWE+RTD + G+TYY+DHNTR+TTW  P
Sbjct:  207 LPPGWERRTDNL-GRTYYVDHNTRSTTWIRP 236

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_EMENI (E3 ubiquitin-protein ligase RSP5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hulA PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.044e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTWN P 
Sbjct:  233 LPAGWERREDNL-GRTYYVDHNTRTTTWNRPS 263

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NV66_GOSAR	1.518e-71	100.00	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2S171_GOSRA	1.311e-70	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QFM6_GOSRA	1.390e-70	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S8F8_GOSRA	1.414e-70	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9SFU3_RICCO	7.066e-64	87.16	Putative uncharacterized protein OS=Ricinus commun...	[more]
G3LNV9_9BRAS	1.504e-63	85.85	AT3G59770-like protein (Fragment) OS=Capsella rube...	[more]
D6PQK2_9BRAS	1.703e-63	85.85	AT3G59770-like protein (Fragment) OS=Capsella gran...	[more]
K4CK98_SOLLC	6.248e-63	86.24	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
G3LNV4_9BRAS	7.041e-63	84.91	AT3G59770-like protein (Fragment) OS=Capsella rube...	[more]
D6PQK7_9BRAS	1.012e-62	84.91	AT3G59770-like protein (Fragment) OS=Neslia panicu...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
SAC9_ARATH	2.044e-61	83.96	Probable phosphoinositide phosphatase SAC9 OS=Arab...	[more]
RSP5_YEAST	5.646e-9	68.57	E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces ...	[more]
WWP2_MOUSE	1.329e-8	63.16	NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus...	[more]
PUB3_SCHPO	1.720e-8	52.27	E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo...	[more]
WWP2_HUMAN	1.817e-8	63.16	NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom...	[more]
BAG3_MOUSE	2.208e-8	62.50	BAG family molecular chaperone regulator 3 OS=Mus ...	[more]
BAG3_HUMAN	2.856e-8	62.50	BAG family molecular chaperone regulator 3 OS=Homo...	[more]
WWP1_MOUSE	3.294e-8	68.75	NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus...	[more]
PUB1_SCHPO	6.109e-8	70.97	E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo...	[more]
RSP5_EMENI	1.044e-7	68.75	E3 ubiquitin-protein ligase RSP5 OS=Emericella nid...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 55..88 e-value: 2.6E-11 score: 53.6
IPR001202	WW domain	PFAM	PF00397	WW	coord: 56..86 e-value: 3.8E-14 score: 52.2
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 60..86
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 54..88 score: 16.451
IPR001202	WW domain	SUPERFAMILY	51045	WW domain	coord: 47..87
None	No IPR available	GENE3D	2.20.70.10		coord: 54..88 e-value: 7.3E-19 score: 66.5
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 47..90
IPR002013	SAC domain	PROSITE	PS50275	SAC	coord: 1..68 score: 10.301

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003764 ID=g.arboreum_cottongen_reftransV1_0003764; Name=g.arboreum_cottongen_reftransV1_0003764; organism=Gossypium arboreum; type=contig; length=328bp
CATCTACAATGATGGCTTTGAAGGGGCCTTCTGCTTAAGATCCCATCAAA
ATGGTGTGTTGCGTTTCAATTGTGCAGATTCTTTGGACAGAACCAATGCT
GCTAGTTTCTTTGGGGCACTGCAAGTATTTGTTGAGCAGTGTAGGCGGCT
TGGGATATCTCTTGATAGTGATTCGACATATGGTTACCATCCAGTCAATA
ACTATGGTGGGTATACTGCCCCCCTCCCACCTGGTTGGGAAAAACGAACT
GATGAAGTAACAGGGAAAACTTATTATATTGATCACAATACAAGGACCAC
AACATGGAATCATCCATGCCCAGATAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR002013	SAC_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0042578	phosphoric ester hydrolase activity

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g.arboreum_cottongen_reftransV1_0003764, g.arboreum_cottongen_reftransV1_0003764 (contig) Gossypium arboreum

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