g.arboreum_cottongen_reftransV1_0003764, g.arboreum_cottongen_reftransV1_0003764 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A061EJ17_THECC (SacI domain-containing protein / WW domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_019841 PE=4 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.472e-61 Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 2 Query: 2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 IY FEGAFCLRSHQNGVLRFNCADSLDRTNAAS+FGALQVFVEQCRRLGISLDSD YGY +NN GGYTAPLPPGWEKR+D VTGKTYYIDHNTRTTTWNHPCPDK Sbjct: 435 IYTGDFEGAFCLRSHQNGVLRFNCADSLDRTNAASYFGALQVFVEQCRRLGISLDSDLAYGYQSINNNGGYTAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWNHPCPDK 543
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: U5FVU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13210g PE=4 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.919e-61 Identity = 97/109 (88.99%), Postives = 99/109 (90.83%), Query Frame = 2 Query: 2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 IY D F GAFCLRSHQNGVLRFNCADSLDRTNAAS+FGALQ FVEQCRRL ISLDSD TYGY VNNYGGYTAPLPPGWEKR+D VTGKTYYIDHNTRTTTW HPCPDK Sbjct: 441 IYTDDFAGAFCLRSHQNGVLRFNCADSLDRTNAASYFGALQCFVEQCRRLAISLDSDLTYGYQSVNNYGGYTAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWKHPCPDK 549
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A061EIE5_THECC (SacI domain-containing protein / WW domain-containing protein isoform 4 OS=Theobroma cacao GN=TCM_019841 PE=4 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.985e-61 Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 2 Query: 2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 IY FEGAFCLRSHQNGVLRFNCADSLDRTNAAS+FGALQVFVEQCRRLGISLDSD YGY +NN GGYTAPLPPGWEKR+D VTGKTYYIDHNTRTTTWNHPCPDK Sbjct: 435 IYTGDFEGAFCLRSHQNGVLRFNCADSLDRTNAASYFGALQVFVEQCRRLGISLDSDLAYGYQSINNNGGYTAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWNHPCPDK 543
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: R0FLQ3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10016564mg PE=4 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 3.154e-61 Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2 Query: 11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+ YGY+ NN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK Sbjct: 149 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSANNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 254
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: V4TNQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021462mg PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 8.973e-61 Identity = 93/109 (85.32%), Postives = 96/109 (88.07%), Query Frame = 2 Query: 2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 I ND F GAF LRSHQNGV+RFNCADSLDRTNAAS+FGALQVFVEQCRRLG+SLDSD YGY NNYGGYTAPLP GWEKR D VTGKTYYIDHNTRTTTW HPCPDK Sbjct: 121 ICNDDFVGAFWLRSHQNGVIRFNCADSLDRTNAASYFGALQVFVEQCRRLGVSLDSDFAYGYQSANNYGGYTAPLPRGWEKRADAVTGKTYYIDHNTRTTTWIHPCPDK 229
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: SAC9_ARATH (Probable phosphoinositide phosphatase SAC9 OS=Arabidopsis thaliana GN=SAC9 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.044e-61 Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 2 Query: 11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 D EGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLD+D YG++ VNN GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK Sbjct: 439 DDIEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDTDLGYGHNSVNNQGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 544
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSP5 PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 5.646e-9 Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 2 Query: 224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328 LPPGWE+RTD G+TYY+DHNTRTTTW P D+ Sbjct: 231 LPPGWERRTDNF-GRTYYVDHNTRTTTWKRPTLDQ 264
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.329e-8 Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 2 Query: 212 YTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPD 325 + PLPPGWEKRTD G+ YY+DHNTRTTTW P + Sbjct: 328 WERPLPPGWEKRTDP-RGRFYYVDHNTRTTTWQRPTAE 364 HSP 2 Score: 50.8322 bits (120), Expect = 6.249e-7 Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 2 Query: 221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316 PLPPGWEKR D G+ YY++HNTRTT W P Sbjct: 406 PLPPGWEKRQD--NGRVYYVNHNTRTTQWEDP 435
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub3 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.720e-8 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 2 Query: 188 HPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319 H ++++ LPPGWE+R D + G+TYY+DHNTRTTTW P Sbjct: 226 HIMSSFEDQYGRLPPGWERRADSL-GRTYYVDHNTRTTTWTRPA 268
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 1.817e-8 Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 2 Query: 212 YTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPD 325 + PLPPGWEKRTD G+ YY+DHNTRTTTW P + Sbjct: 328 WERPLPPGWEKRTDP-RGRFYYVDHNTRTTTWQRPTAE 364 HSP 2 Score: 50.447 bits (119), Expect = 8.122e-7 Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 2 Query: 218 APLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316 PLPPGWEKR D G+ YY++HNTRTT W P Sbjct: 405 GPLPPGWEKRQD--NGRVYYVNHNTRTTQWEDP 435
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: BAG3_MOUSE (BAG family molecular chaperone regulator 3 OS=Mus musculus GN=Bag3 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 2.208e-8 Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 2 Query: 221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316 PLPPGWE + D TG +++DHN+RTTTWN P Sbjct: 23 PLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDP 54
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: BAG3_HUMAN (BAG family molecular chaperone regulator 3 OS=Homo sapiens GN=BAG3 PE=1 SV=3) HSP 1 Score: 54.6842 bits (130), Expect = 2.856e-8 Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 2 Query: 221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316 PLPPGWE + D TG +++DHN+RTTTWN P Sbjct: 21 PLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDP 52
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 3.294e-8 Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 2 Query: 221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316 PLPPGWE+R D+ G+ YY+DHNTRTTTW P Sbjct: 378 PLPPGWERRVDD-RGRVYYVDHNTRTTTWQRP 408 HSP 2 Score: 51.2174 bits (121), Expect = 4.578e-7 Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 2 Query: 215 TAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCP 322 T LP GWE+R D G+TYY+DHNTRTTTW P P Sbjct: 344 TEALPSGWEQRKDP-HGRTYYVDHNTRTTTWERPQP 378
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pub1 PE=1 SV=2) HSP 1 Score: 53.9138 bits (128), Expect = 6.109e-8 Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 2 Query: 224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316 LPPGWE+RTD + G+TYY+DHNTR+TTW P Sbjct: 207 LPPGWERRTDNL-GRTYYVDHNTRSTTWIRP 236
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_EMENI (E3 ubiquitin-protein ligase RSP5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hulA PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 1.044e-7 Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 2 Query: 224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319 LP GWE+R D + G+TYY+DHNTRTTTWN P Sbjct: 233 LPAGWERREDNL-GRTYYVDHNTRTTTWNRPS 263 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0003764 ID=g.arboreum_cottongen_reftransV1_0003764; Name=g.arboreum_cottongen_reftransV1_0003764; organism=Gossypium arboreum; type=contig; length=328bpback to top |