g.arboreum_cottongen_reftransV1_0003764, g.arboreum_cottongen_reftransV1_0003764 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003764
Unique Nameg.arboreum_cottongen_reftransV1_0003764
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0003764:1..328 .
Chr11:8263914..8264241 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0B0NV66_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21470 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.518e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2 
Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2S171_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.311e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2 
Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2QFM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.390e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2 
Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2S8F8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.414e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2 
Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: B9SFU3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0723200 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.066e-64
Identity = 95/109 (87.16%), Postives = 101/109 (92.66%), Query Frame = 2 
Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYND F GAFCLRSHQNGV+RFNCADSLDRTNAAS+FGALQVFVEQCRRLGISLDSD  YGY  V ++GGY+APLPPGWEKR+D VTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDDFAGAFCLRSHQNGVIRFNCADSLDRTNAASYFGALQVFVEQCRRLGISLDSDLGYGYQSVGDHGGYSAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWNHPCPDK 543
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: G3LNV9_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella rubella PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.504e-63
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: D6PQK2_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella grandiflora PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.703e-63
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: K4CK98_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g044400.1 PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 6.248e-63
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2 
Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IY+D  +GAFCLRSHQNGV+R+NCADSLDRTNAASFFGALQVF+EQCRRLGISLDSD  YGY   NN GGYTAPLPPGWEKRTD VTGKTY+IDHNTRTTTWNHPCPDK
Sbjct:  435 IYSDDIDGAFCLRSHQNGVIRYNCADSLDRTNAASFFGALQVFMEQCRRLGISLDSDLAYGYQSYNNNGGYTAPLPPGWEKRTDAVTGKTYFIDHNTRTTTWNHPCPDK 543
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: G3LNV4_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella rubella PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.041e-63
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2 
Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+  NN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSANNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: D6PQK7_9BRAS (AT3G59770-like protein (Fragment) OS=Neslia paniculata PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.012e-62
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2 
Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D  EGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLD+D  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDIEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDTDLGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: NEDD4_HUMAN (E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=4)

HSP 1 Score: 51.2174 bits (121), Expect = 5.559e-7
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:  218 APLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCP 322
            +PLPPGWE+R D + G+TYY++H +R T W  P P
Sbjct:  610 SPLPPGWEERQD-ILGRTYYVNHESRRTQWKRPTP 643

HSP 2 Score: 51.2174 bits (121), Expect = 5.763e-7
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 2 
Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            LPPGWE++ DE  G++YY+DHN+RTTTW  P
Sbjct:  769 LPPGWEEKQDE-RGRSYYVDHNSRTTTWTKP 798
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPFU (Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hulA PE=3 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 5.597e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2 
Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  229 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 259
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPFC (Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=hulA PE=3 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 5.597e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2 
Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  229 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 259
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPCL (Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=hulA PE=3 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 5.808e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2 
Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  231 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 261
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NV66_GOSAR1.518e-71100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2S171_GOSRA1.311e-70100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QFM6_GOSRA1.390e-70100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S8F8_GOSRA1.414e-70100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9SFU3_RICCO7.066e-6487.16Putative uncharacterized protein OS=Ricinus commun... [more]
G3LNV9_9BRAS1.504e-6385.85AT3G59770-like protein (Fragment) OS=Capsella rube... [more]
D6PQK2_9BRAS1.703e-6385.85AT3G59770-like protein (Fragment) OS=Capsella gran... [more]
K4CK98_SOLLC6.248e-6386.24Uncharacterized protein OS=Solanum lycopersicum GN... [more]
G3LNV4_9BRAS7.041e-6384.91AT3G59770-like protein (Fragment) OS=Capsella rube... [more]
D6PQK7_9BRAS1.012e-6284.91AT3G59770-like protein (Fragment) OS=Neslia panicu... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NEDD4_HUMAN5.559e-754.29E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens ... [more]
RSP5_ASPFU5.597e-765.63Probable E3 ubiquitin-protein ligase hulA OS=Neosa... [more]
RSP5_ASPFC5.597e-765.63Probable E3 ubiquitin-protein ligase hulA OS=Neosa... [more]
RSP5_ASPCL5.808e-765.63Probable E3 ubiquitin-protein ligase hulA OS=Asper... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 55..88
e-value: 2.6E-11
score: 53.6
IPR001202WW domainPFAMPF00397WWcoord: 56..86
e-value: 3.8E-14
score: 52.2
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 60..86
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 54..88
score: 16.451
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 47..87
NoneNo IPR availableGENE3D2.20.70.10coord: 54..88
e-value: 7.3E-19
score: 66.5
NoneNo IPR availablePANTHERPTHR14791BOMB/KIRA PROTEINScoord: 47..90
IPR002013SAC domainPROSITEPS50275SACcoord: 1..68
score: 10.301

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003764 ID=g.arboreum_cottongen_reftransV1_0003764; Name=g.arboreum_cottongen_reftransV1_0003764; organism=Gossypium arboreum; type=contig; length=328bp
CATCTACAATGATGGCTTTGAAGGGGCCTTCTGCTTAAGATCCCATCAAA
ATGGTGTGTTGCGTTTCAATTGTGCAGATTCTTTGGACAGAACCAATGCT
GCTAGTTTCTTTGGGGCACTGCAAGTATTTGTTGAGCAGTGTAGGCGGCT
TGGGATATCTCTTGATAGTGATTCGACATATGGTTACCATCCAGTCAATA
ACTATGGTGGGTATACTGCCCCCCTCCCACCTGGTTGGGAAAAACGAACT
GATGAAGTAACAGGGAAAACTTATTATATTGATCACAATACAAGGACCAC
AACATGGAATCATCCATGCCCAGATAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR002013SAC_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0042578phosphoric ester hydrolase activity