g.arboreum_cottongen_reftransV1_0003764, g.arboreum_cottongen_reftransV1_0003764 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003764
Unique Name	g.arboreum_cottongen_reftransV1_0003764
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0003764:1..328 . Chr11:8263914..8264241 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0B0NV66_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21470 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.518e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2S171_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.311e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2QFM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.390e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: A0A0D2S8F8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G232600 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.414e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: B9SFU3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0723200 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.066e-64
Identity = 95/109 (87.16%), Postives = 101/109 (92.66%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IYND F GAFCLRSHQNGV+RFNCADSLDRTNAAS+FGALQVFVEQCRRLGISLDSD  YGY  V ++GGY+APLPPGWEKR+D VTGKTYYIDHNTRTTTWNHPCPDK
Sbjct:  435 IYNDDFAGAFCLRSHQNGVIRFNCADSLDRTNAASYFGALQVFVEQCRRLGISLDSDLGYGYQSVGDHGGYSAPLPPGWEKRSDAVTGKTYYIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: G3LNV9_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella rubella PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.504e-63
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: D6PQK2_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella grandiflora PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.703e-63
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: K4CK98_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g044400.1 PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 6.248e-63
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2

Query:    2 IYNDGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            IY+D  +GAFCLRSHQNGV+R+NCADSLDRTNAASFFGALQVF+EQCRRLGISLDSD  YGY   NN GGYTAPLPPGWEKRTD VTGKTY+IDHNTRTTTWNHPCPDK
Sbjct:  435 IYSDDIDGAFCLRSHQNGVIRYNCADSLDRTNAASFFGALQVFMEQCRRLGISLDSDLAYGYQSYNNNGGYTAPLPPGWEKRTDAVTGKTYFIDHNTRTTTWNHPCPDK 543

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: G3LNV4_9BRAS (AT3G59770-like protein (Fragment) OS=Capsella rubella PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.041e-63
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D FEGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLDS+  YGY+  NN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDFEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDSELGYGYNSANNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Match: D6PQK7_9BRAS (AT3G59770-like protein (Fragment) OS=Neslia paniculata PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.012e-62
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 2

Query:   11 DGFEGAFCLRSHQNGVLRFNCADSLDRTNAASFFGALQVFVEQCRRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            D  EGAFCLRSHQNGV+RFNCADSLDRTNAASFFG LQVFVEQCRRLGISLD+D  YGY+ VNN+GGY APLPPGWEKR D VTGK+YYIDHNT+TTTW+HPCPDK
Sbjct:    4 DDIEGAFCLRSHQNGVIRFNCADSLDRTNAASFFGGLQVFVEQCRRLGISLDTDLGYGYNSVNNHGGYNAPLPPGWEKRADAVTGKSYYIDHNTKTTTWSHPCPDK 109

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 2.810e-7
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 2

Query:  149 LGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCP 322
            L I L      G  P+N      APLPPGWE+R D+  G+ YY+DH  + TTW+ P P
Sbjct:  266 LIIPLTISGGSGPRPLNTVS--QAPLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPEP 320

HSP 2 Score: 51.6026 bits (122), Expect = 3.399e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            PLPPGWE+R D + G+ YY+DH TRTTTW  P
Sbjct:  320 PLPPGWERRVDNM-GRIYYVDHFTRTTTWQRP 350

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 3.144e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  221 PLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            PLPPGWE+R D + G+ YY+DH TRTTTW  P
Sbjct:  359 PLPPGWERRVDNM-GRIYYVDHFTRTTTWQRP 389

HSP 2 Score: 50.447 bits (119), Expect = 7.427e-7
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 2

Query:  149 LGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCP 322
            L I L      G  P+N      APLPPGWE+R D+  G+ YY+DH  + TTW+ P P
Sbjct:  305 LIIPLTISGGSGPRPLNPVT--QAPLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPEP 359

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.161e-7
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 2

Query:  191 PVNNYGGY--TAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCP 322
            PV    G   T  LP GWE+R D   G+TYY+DHNTRTTTW  P P
Sbjct:  338 PVRQQSGNANTETLPSGWEQRKDP-HGRTYYVDHNTRTTTWERPQP 382

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: SUDX_DROME (E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.363e-7
Identity = 27/62 (43.55%), Postives = 34/62 (54.84%), Query Frame = 2

Query:  143 RRLGISLDSDSTYGYHPVNNYGGYTAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPCPDK 328
            RR  +  ++ STY   P         PLPPGWE R D   G+ YY+DHNTR TTW  P  ++
Sbjct:  378 RRYYVDHNTRSTYWEKP--------TPLPPGWEIRKDG-RGRVYYVDHNTRKTTWQRPNSER 430

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 4.454e-7
Identity = 18/34 (52.94%), Postives = 29/34 (85.29%), Query Frame = 2

Query:  215 TAPLPPGWEKRTDEVTGKTYYIDHNTRTTTWNHP 316
            ++ LPPGWE++ D+  G++YY+DHN++TTTW+ P
Sbjct:  404 SSGLPPGWEEKQDD-RGRSYYVDHNSKTTTWSKP 436

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_NEOFI (Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hulA PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.072e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  232 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 262

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPNC (Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hulA PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.222e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  233 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 263

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPTN (Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hulA PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.244e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  225 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 255

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPOR (Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=hulA PE=3 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 5.307e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  231 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Match: RSP5_ASPFN (Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=hulA PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.445e-7
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  224 LPPGWEKRTDEVTGKTYYIDHNTRTTTWNHPC 319
            LP GWE+R D + G+TYY+DHNTRTTTW  P 
Sbjct:  228 LPAGWERREDNL-GRTYYVDHNTRTTTWTRPS 258

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NV66_GOSAR	1.518e-71	100.00	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2S171_GOSRA	1.311e-70	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QFM6_GOSRA	1.390e-70	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S8F8_GOSRA	1.414e-70	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9SFU3_RICCO	7.066e-64	87.16	Putative uncharacterized protein OS=Ricinus commun...	[more]
G3LNV9_9BRAS	1.504e-63	85.85	AT3G59770-like protein (Fragment) OS=Capsella rube...	[more]
D6PQK2_9BRAS	1.703e-63	85.85	AT3G59770-like protein (Fragment) OS=Capsella gran...	[more]
K4CK98_SOLLC	6.248e-63	86.24	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
G3LNV4_9BRAS	7.041e-63	84.91	AT3G59770-like protein (Fragment) OS=Capsella rube...	[more]
D6PQK7_9BRAS	1.012e-62	84.91	AT3G59770-like protein (Fragment) OS=Neslia panicu...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0003764 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
ITCH_MOUSE	2.810e-7	44.83	E3 ubiquitin-protein ligase Itchy OS=Mus musculus ...	[more]
ITCH_HUMAN	3.144e-7	65.63	E3 ubiquitin-protein ligase Itchy homolog OS=Homo ...	[more]
WWP1_HUMAN	3.161e-7	56.52	NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom...	[more]
SUDX_DROME	3.363e-7	43.55	E3 ubiquitin-protein ligase Su(dx) OS=Drosophila m...	[more]
NEDD4_MOUSE	4.454e-7	52.94	E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ...	[more]
RSP5_NEOFI	5.072e-7	65.63	Probable E3 ubiquitin-protein ligase hulA OS=Neosa...	[more]
RSP5_ASPNC	5.222e-7	65.63	Probable E3 ubiquitin-protein ligase hulA OS=Asper...	[more]
RSP5_ASPTN	5.244e-7	65.63	Probable E3 ubiquitin-protein ligase hulA OS=Asper...	[more]
RSP5_ASPOR	5.307e-7	65.63	Probable E3 ubiquitin-protein ligase hulA OS=Asper...	[more]
RSP5_ASPFN	5.445e-7	65.63	Probable E3 ubiquitin-protein ligase hulA OS=Asper...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 55..88 e-value: 2.6E-11 score: 53.6
IPR001202	WW domain	PFAM	PF00397	WW	coord: 56..86 e-value: 3.8E-14 score: 52.2
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 60..86
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 54..88 score: 16.451
IPR001202	WW domain	SUPERFAMILY	51045	WW domain	coord: 47..87
None	No IPR available	GENE3D	2.20.70.10		coord: 54..88 e-value: 7.3E-19 score: 66.5
None	No IPR available	PANTHER	PTHR14791	BOMB/KIRA PROTEINS	coord: 47..90
IPR002013	SAC domain	PROSITE	PS50275	SAC	coord: 1..68 score: 10.301

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003764 ID=g.arboreum_cottongen_reftransV1_0003764; Name=g.arboreum_cottongen_reftransV1_0003764; organism=Gossypium arboreum; type=contig; length=328bp
CATCTACAATGATGGCTTTGAAGGGGCCTTCTGCTTAAGATCCCATCAAA
ATGGTGTGTTGCGTTTCAATTGTGCAGATTCTTTGGACAGAACCAATGCT
GCTAGTTTCTTTGGGGCACTGCAAGTATTTGTTGAGCAGTGTAGGCGGCT
TGGGATATCTCTTGATAGTGATTCGACATATGGTTACCATCCAGTCAATA
ACTATGGTGGGTATACTGCCCCCCTCCCACCTGGTTGGGAAAAACGAACT
GATGAAGTAACAGGGAAAACTTATTATATTGATCACAATACAAGGACCAC
AACATGGAATCATCCATGCCCAGATAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR002013	SAC_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0042578	phosphoric ester hydrolase activity

Search form

g.arboreum_cottongen_reftransV1_0003764, g.arboreum_cottongen_reftransV1_0003764 (contig) Gossypium arboreum

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